Isolation, molecular characterization and growth-promoting activities of endophytic sugarcane diazotroph Klebsiella sp. GR9

World Journal of Microbiology and Biotechnology

Volumn 23, Issue 7, 2007, Pages 997-1006

  Govindarajan, Munusamy ^a,c   Kwon, Soon Wo ^b   Weon, Hang Yeon ^b  

^a A V V M SRI PUSHPAM COLLEGE   (India)

^b National Institute of Animal Science   (South Korea)

^c Dr Rajan Laboratories # 28/6   (India)

Author keywords

16S rDNA sequences; AR activity; IAA production; Inoculation; nifD gene amplification; Sugarcane endophytic diazotrophs

Indexed keywords

ACETYLENE; CHARACTERIZATION; DNA SEQUENCES; REDUCTION; RNA; SUGAR CANE;

16S RDNA SEQUENCES; INOCULATION; NIFD GENE AMPLIFICATION; SUGARCANE ENDOPHYTIC DIAZOTROPHS;

BACTERIA;

AZOSPIRILLUM LIPOFERUM; BURKHOLDERIA; BURKHOLDERIA VIETNAMIENSIS; GLUCONACETOBACTER; GLUCONACETOBACTER DIAZOTROPHICUS; HERBASPIRILLUM; HERBASPIRILLUM SEROPEDICAE; KLEBSIELLA; KLEBSIELLA PNEUMONIAE; KLEBSIELLA SP.; PSEUDOMONAS; PSEUDOMONAS SP.;

EID: 34249779854     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-006-9326-y     Document Type: Article

References (51)

1. Arias OE, Gatti IM, Silva DM, Ruschel AP, Vose PB (1978) Primeiras observaciones al microscopio eletronico de bacterias fijadoras de N2 en la raiz de la cana de azucar (Saccharum officinarum L.). Tarrialba 28:203-207
2. Baldani JI, Baldani VLD, Seldin L, Dobereiner J (1986) Characterization of Herbaspirillum seropedicae gen.nov.sp.nov., a root associated nitrogen fixing bacterium. Int J Syst Bacteriol 36:86-93.
3. Baldani JI, Caruso L, Baldani VLD, Goi SR, Dobereiner J (1997) Recent advances in BNF with non-legume plants. Soil Biol Biochem 29:911-922
4. 2-fixing bacteria in a rice rhizosphere. Can J Microbiol 29:881-887
5. Bashan Y, Levanony H, Mitiku G (1989) Changes in proton efflux of intact wheat roots induced by Azospirillum brasilense Cd. Can J Microbiol 35:691-697
6. Bockman OC (1996) Fertilizers and biological nitrogen fixation as sources of plant nutrients: perspectives for future agricultures. Forskningssenteret, Porsgunn, Norsko Hydro, Norway
7. Boddey RM, Dobereiner J (1995) Nitrogen fixation associated with grasses and cereals; recent progress and perspectives for the future. Fertil Res 42:241-250
8. Boddey RM, Urquiaga S, Alves BJR, Veronica R (2003) Endophytic nitrogen fixation in sugarcane: present knowledge and future applications. Plant Soil 252:139-149
9. Burbage DA, Sasser M (1982) A medium selective for Pseudomonas cepacia. Phytopathology 72:706
10. Dobereiner J, Ruschel AP (1958) Uma nova especie de Beijerinkia. Rev Biol 1:261-272
11. Dobereiner J (1992) History and new perspectives of diazotrophs in association with nonleguminous plants. Symbiosis 13:1-13
12. Dobereiner J, Urquiaga S (1992) Soil biology and sustainable agriculture. An Acad Bras Sci 84:127-133
13. Dobereiner J (1997) Biological nitrogen fixation in the tropics: social and economic contributions. Soil Biol Biochem 29:771-774
14. 2-fixing endophytic Burkholderia sp. associated with maize plants cultivated in Mexico. Can J Microbiol 48:285-294
15. Franke IH, Fegan M, Hayward AC, Sly LI (1998) Nucleotide sequence of the nifH gene coding for nitrogen reductase in the acetic acid bacterium Acetobacter diazotrophicus. Lett Appl Microbiol 26:12-16
16. Govindarajan M, Balandreau J, Muthukumarasamy R, Revathi G, Lakshminarasimhan C (2006) Improved yield of micropropagated Sugarcane following inoculation by endophytic Burkholderia vietnamiensis. Plant Soil 280:239-252
17. Gillis M, Kresters K, Hoste B, Janssens D, Kropenstedt RM, Stephen MP, Teixeira KRS, Dobereiner J, De Ley J (1989) Acetobacter diazotrophicus sp. nov., a nitrogen-fixing acetic acid bacterium associated with sugarcane. Int J Systemat Bacteriol 39:361-364
18. 2-fixing isolates from rice in Vietnam. Int J Systemat Bacteriol 45:274-289
19. Graciolli LA, Freitas JR, Ruschel AP (1983) Bacterias fix adoras de nitrogenio nas raizes, caules e folhas de cana-de-acucar (Saccharum sp.). Rev Microbiol 14:191-196
20. 2-fixation in the rhizosphere of sugarcane planted under semi-arid conditions of Egypt. Rev Ecol Biol Soil 16:23-37
21. 2 fixing bacteria. J Microbiol Methods 9:163-173
22. Heulin T, Omar N, Rahman M, Balandreau J (1991) Some principles for inoculation of rice by Nitrogen-fixing bacteria under field conditions. In: Dutta SK, Sloger C (eds) Biological Nitrogen fixation associated with rice production. Oxford and IBH publishing Co., New Delhi, pp 221-227, ISBN 8120405609
23. Hiraishi A (1992) Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification. Lett Appl Microbiol 15:210-213
24. Humphries EC (1956) Mineral components and ash analysis. In: Peach K, Tracged MV (eds) Modern methods of plant analysis, Springer-Verlag, Berlin, pp 468-502
25. 2) activity in non-cultivated and cereal plants; influence of nitrogen fertilizer on population and activity of nitrogen fixing bacteria. Z Pflanzenkr Pflanzenschutz 146:217-227
26. James EK, Olivares FL (1997) Infection and colonization of sugar cane and other graminaceous plants by endophytic diazotrophs. Crit Rev Plant Sci 17:77-119
27. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism, vol. 3. Academic Press, New York, pp 21-132, ISBN 0125106033
28. King ED, Ward MK, Raney DE (1954) Two simple media for the demonstration of pyocyanin and fluorescein. J Lab Clin Med 44:301-307
29. Kudo TM, Ohkuma M, Moriya S, Noda S, Ohtokak (1998) Molecular phylogenetic identification of the intestinal anaerobic microbial community in the hindgut of the termite, Reticulitermes speratus, without cultivation. Extremophiles 2:155-161
30. Kumar S, Tamur K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
31. Kwon SW, Kim JS, Park IC, Yoon SH, Park DH, Lim CK, Go SJ (2003) Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov., and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea. Int J Systemat Evol Microbiol 53:21-27
32. 2) reduction by five rice varieties, and relationship with plant growth characters as affected by straw incorporation. Soil Sci Plant Nutr 32:91-106
33. Lovell CR, Piceno YM, Quattro JM, Baagwell CE (2000) Molecular analysis of diazotroph diversity in the rhizosphere of the smooth cordgrass, Spartina alterniflora. Appl Environ Microbiol 66:3814-3822
34. Mascarua-Esparza MA, Villa-Gonzallez R, Caballero-Melado J (1988) Acetylene reduction and indolacetic acid production by Azospirillum isolates from Cactaceous plants. Plant Soil 106:91-95
35. Mehnaz S, Mirza MS Haurat J, Bally R, Normand P, Bano A, Malik KA (2001) Isolation and 16S rRNA sequence analysis of the beneficial bacteria from the rhizosphere of rice. Can J Microbiol 47:110-117
36. Minerdi D, Fani R, Gallo R, Boarino A & Bonfante P (2001) Nitrogen fixation genes in an endosymbiotic Burkholderia strain. Appl Environ Microbiol 67:725-732
37. Omar N, Berge O, Shalaan SN, Hubert JL, Heulin T, Balandreau J (1992) Inoculation of rice with Azospirillum brasilense in Egypt. Results of five different trials between 1985 and 1990. Symbiosis 13:281-289
38. Purchase BS (1980) Nitrogen fixation associated with sugarcane. In: Proceedings of the South African Sugar Technologists Association, pp 173-176
39. Rasul G, Mirza MS, Latif F, Malik KA (1998) Identification of plant growth hormones produced by bacterial isolates from rice, wheat and kallar grass. In: Malik KA, Mirza MS, Ladha JK (eds) Nitrogen fixation with non-legumes, Kluwer Academic Publishers, Netherlands, ISBN 0792348737
40. Reis VM, Baldani JI, Baldani VLD, Dobereiner J (2000) Biological dinitrogen fixation in Gramineae and palm trees. Crit Rev Plant Sci 206:205-211
41. 2-fixing bacteria associated with sugarcane (Saccharum sp.). Can J Microbiol 28:462-467
42. Saitou N, Nei M 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
43. Seldin L, Van Elsas JD, Penido EGC (1984) Bacillus azotofixans sp.nov., a nitrogen fixing species from Brazilian soils and grass roots. Int J Systemat Bacteriol 34:451-456
44. Somasekaran P, Huben HJ (1994) Handbook for Rhizobia. Springer-Verlag, pp 340, ISBN 0387941347
45. Sreenivasan J, Sreenivasan TV (1984) In vitro propagation of Saccharum officinarum and Sclerostachya fusca hybrid. Theor Appl Genet 67:171-174
46. Tien TM, Gaskins MH, Hubbel DH (1979) Plant growth substances produced by Azospirillum brasilense and their effect on growth of pearl millet (Pennisetum americanum L). Appl Environ Microbiol 37:1016-1024
47. Tran Van V, Berge O, Balandreau J, Ngo Kê S, Heulin T (1996) Isolement et activité nitrogénasique de Burkholderia vietnamiensis, bactérie fixatrice d'azote associée au riz (Oryza sativa L) cultivé sur un sol sulfaté acide du Viêt-nam. Agronomie 16:479-491
48. 2 fixing bacteria associated with rice roots by molecular evolutionary analysis of a NifD library. Can J Microbiol 41:235-240
49. 2 reduction) activity and population of aerobic heterotrophic nitrogen fixing bacteria associated with wetland rice. Appl Environ Microbiol 37:813-819
50. Yamada Y, Hoshino K, Ishikawa T (1997) The phylogeny of acetic acid bacteria based on the partial sequences of 16S ribosomal RNA: the elevation of the subgenus Gluconacetobacter to the generic level. Biosci Biotechnol Biochem 61:1244-1251
51. Zehr JP, Mellon MT, Zani S (1998) New nitrogen-fixing microorganisms detected in oligotrophic oceans by amplification of nitrogenase (nif-H) genes. Appl Environ Microbiol 64:3444-3450