Neuropeptide precursors in Tribolium castaneum

Peptides

Volumn 28, Issue 6, 2007, Pages 1282-1291

  Amare, Andinet ^a   Sweedler, Jonathan V ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Neuropeptides; NeuroPred; Prohormone; Tribolium

Indexed keywords

ECLOSION HORMONE; INSECT HORMONE; NEUROPEPTIDE; NEUROPEPTIDE F; NEUROPHYSIN; PROTHORACICOTROPIC HORMONE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; INSECT GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DETERMINATION; TRIBOLIUM;

AMINO ACID SEQUENCE; ANIMALS; COMPUTATIONAL BIOLOGY; INSECT HORMONES; MOLECULAR SEQUENCE DATA; NEUROPEPTIDES; PROTEIN PRECURSORS; PROTEIN SORTING SIGNALS; PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; TRIBOLIUM;

ANIMALIA; HEXAPODA; TRIBOLIUM CASTANEUM;

EID: 34249749353     PISSN: 01969781     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.peptides.2007.04.014     Document Type: Article

References (37)

1. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J Mol Biol 215 (1990) 403-410
2. Amare A., Hummon A.B., Southey B.R., Zimmerman T.A., Rodriguez-Zas S.L., and Sweedler J.V. Bridging neuropeptidomics and genomics with bioinformatics: prediction of mammalian neuropeptide prohormone processing. J Proteome Res 5 (2006) 1162-1167
3. Baggerman G., Boonen K., Verleyen P., De Loof A., and Schoofs L. Peptidomic analysis of the larval Drosophila melanogaster central nervous system by two-dimensional capillary liquid chromatography quadrupole time-of-flight mass spectrometry. J Mass Spectrom 40 (2005) 250-260
4. Baggerman G., Liu F., Wets G., and Schoofs L. Bioinformatic analysis of peptide precursor proteins. Ann N Y Acad Sci 1040 (2005) 59-65
5. Bendtsen J.D., Nielsen H., von Heijne G., and Brunak S. Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340 (2004) 783-795
6. Brown M.R., Crim J.W., Arata R.C., Cai H.N., Chun C., and Shen P. Identification of a Drosophila brain-gut peptide related to the neuropeptide Y family. Peptides 20 (1999) 1035-1042
7. Brown S, Denell R, Beeman R, Richard Gibbs R. Rationale to sequence the genome of the red flour beetle, Tribolium castaneum. http://wwwhgscbcmtmcedu/projects/Tribolium/TriboliumWhitePaperpdf.
8. Campbell N. Biology. 4th ed. Menlo Park: The Benjamin/Cummings publishing company, Inc.; 1996.
9. Clynen E., Huybrechts J., Verleyen P., De Loof A., and Schoofs L. Annotation of novel neuropeptide precursors in the migratory locust based on transcript screening of a public EST database and mass spectrometry. BMC Genomics 7 (2006) 201
10. Tribolium Genome Sequencing Consortium. The first genome sequence of a beetle, Tribolium castaneum, a model for insect development and pest biology. Nature, submitted, 2007.
11. De Loof A., Baggerman G., Breuer M., Claeys I., Cerstiaens A., Clynen E., et al. Gonadotropins in insects: an overview. Arch Insect Biochem Physiol 47 (2001) 129-138
12. Duckert P., Brunak S., and Blom N. Prediction of proprotein convertase cleavage sites. Protein Eng Des Sel 17 (2004) 107-112
13. Elsik C.G., Mackey A.J., Reese J.T., Milshina N.V., Roos D.S., and Weinstock G.M. Creating a honey bee consensus gene set. Genome Biol 8 (2007) R13
14. Friedel T., Loughton B.G., and Andrew R.D. A neurosecretory protein from Locusta migratoria. Gen Comp Endocrinol 41 (1980) 487-498
15. Hesterlee S., and Morton D.B. Insect physiology: the emerging story of ecdysis. Curr Biol 6 (1996) 648-650
16. Hewes R.S., and Taghert P.H. Neuropeptides and neuropeptide receptors in the Drosophila melanogaster genome. Genome Res 11 (2001) 1126-1142
17. Huang Y., Brown M.R., Lee T.D., and Crim J.W. RF-amide peptides isolated from the midgut of the corn earworm, Helicoverpa zea, resemble pancreatic polypeptide. Insect Biochem Mol Biol 28 (1998) 345-356
18. Hummon A.B., Hummon N.P., Corbin R.W., Li L., Vilim F.S., Weiss K.R., et al. From precursor to final peptides: a statistical sequence-based approach to predicting prohormone processing. J Proteome Res 2 (2003) 650-656
19. Hummon A.B., Richmond T.A., Verleyen P., Baggerman G., Huybrechts J., Ewing M.A., et al. From the genome to the proteome: uncovering peptides in the Apis brain. Science 314 (2006) 647-649
20. Ishibashi J., Kataoka H., Isogai A., Kawakami A., Saegusa H., Yagi Y., et al. Assignment of disulfide bond location in prothoracicotropic hormone of the silkworm, Bombyx mori: a homodimeric peptide. Biochemistry 33 (1994) 5912-5919
21. Kataoka H., Li J.P., Lui A.S., Kramer S.J., and Schooley D.A. Complete structure of eclosion hormone of Manduca sexta. Assignment of disulfide bond location. Int J Pept Protein Res 39 (1992) 29-35
22. Kopec S. Studies on the necessity of the brain for the inception of insect metamorphosis. Biol Bull Woods Hole 42 (1992) 322-342
23. Liu F., Baggerman G., D'Hertog W., Verleyen P., Schoofs L., and Wets G. In silico identification of new secretory peptide genes in Drosophila melanogaster. Mol Cell Proteomics 5 (2006) 510-522
24. Matsumoto S., Brown M.R., Crim J.W., Vigna S.R., and Lea A.O. Isolation and primary structure of neuropeptides from the mosquito, Aedes aegypti, immunoreactive to FMRFamide antiserum. Insect Biochem 19 (1989) 277-283
25. Nassel D.R. Neuropeptides in the nervous system of Drosophila and other insects: multiple roles as neuromodulators and neurohormones. Prog Neurobiol 68 (2002) 1-84
26. Proux J.P., Miller C.A., Li J.P., Carney R.L., Girardie A., Delaage M., et al. Identification of an arginine vasopressin-like diuretic hormone from Locusta migratoria. Biochem Biophys Res Commun 149 (1987) 180-186
27. Riehle M.A., Garczynski S.F., Crim J.W., Hill C.A., and Brown M.R. Neuropeptides and peptide hormones in Anopheles gambiae. Science 298 (2002) 172-175
28. Schoofs L., Clynen E., Cerstiaens A., Baggerman G., Wei Z., Vercammen T., et al. Newly discovered functions for some myotropic neuropeptides in locusts. Peptides 22 (2001) 219-227
29. Southey B, Hummon A, Richmond T, Sweedler J, Rodriguez-Zas S. Prediction of neuropeptide cleavage sites in insects, in press.
30. Southey B.R., Amare A., Zimmerman T.A., Rodriguez-Zas S.L., and Sweedler J.V. NeuroPred: a tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides. Nucleic Acids Res 34 (2006) W267-W272
31. Southey B.R., Rodriguez-Zas S.L., and Sweedler J.V. Prediction of neuropeptide prohormone cleavages with application to RFamides. Peptides 27 (2006) 1087-1098
32. Spittaels K., Verhaert P., Shaw C., Johnston R.N., Devreese B., Van Beeumen J., et al. Insect neuropeptide F (NPF)-related peptides: isolation from Colorado potato beetle (Leptinotarsa decemlineata) brain. Insect Biochem Mol Biol 26 (1996) 375-382
33. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22 (1994) 4673-4680
34. Vanden Broeck J. Neuropeptides and their precursors in the fruitfly, Drosophila melanogaster. Peptides 22 (2001) 241-254
35. Veenstra J.A. Isolation and identification of three RFamide-immunoreactive peptides from the mosquito Aedes aegypti. Peptides 20 (1999) 31-38
36. Veenstra J.A., and Costes L. Isolation and identification of a peptide and its cDNA from the mosquito Aedes aegypti related to Manduca sexta allatotropin. Peptides 20 (1999) 1145-1151
37. Wei Z.J., Zhang Q.R., Kang L., Xu W.H., and Denlinger D.L. Molecular characterization and expression of prothoracicotropic hormone during development and pupal diapause in the cotton bollworm, Helicoverpa armigera. J Insect Physiol 51 (2005) 691-700