Phylogenetic diversity and cosymbiosis in the bioluminescent symbioses of "Photobacterium mandapamensis"

Applied and Environmental Microbiology

Volumn 73, Issue 10, 2007, Pages 3173-3182

  Kaeding, Allison J ^a   Ast, Jennifer C ^a   Pearce, Meghan M ^a,e   Urbanczyk, Henryk ^a   Kimura, Seishi ^b   Endo, Hiromitsu ^c   Nakamura, Masaru ^d   Dunlap, Paul V ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

^b MIE UNIVERSITY   (Japan)

^c KOCHI UNIVERSITY   (Japan)

^d UNIVERSITY OF THE RYUKYUS   (Japan)

^e NORTHWESTERN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALS; BACTERIA; BIODIVERSITY; GENES; LUMINESCENCE;

BIOLUMINESCENT SYMBIOSES; ENVIRONMENTAL DISTRIBUTIONS; PHOTOBACTERIUM LEIOGNATHI;

MICROBIOLOGY;

RIBOFLAVIN;

BACTERIUM; BIOLUMINESCENCE; DNA FINGERPRINTING; HOST PREFERENCE; HOST RANGE; PHYLOGENETICS; SYMBIOSIS; TELEOST;

ARTICLE; BACTERIAL GENE; BACTERIUM ISOLATION; BIOLUMINESCENCE; COEVOLUTION; FISH; GENE AMPLIFICATION; GENETIC VARIABILITY; GYRB GENE; HOST RANGE; LUXAB(F)E GENE; LUXCDAB(F)E GENE; MARINE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOBACTERIUM; PHOTOBACTERIUM ANGUSTUM; PHOTOBACTERIUM DAMSELAE; PHOTOBACTERIUM ILIOPISCARIUM; PHOTOBACTERIUM KISHITANII; PHOTOBACTERIUM LEIOGNATHI; PHOTOBACTERIUM MANDAPAMENSIS; PHOTOBACTERIUM PHOSPHOREUM; PHYLOGENY; RIBBHA GENE; SYMBIONT; SYMBIOSIS; VIBRIO FISCHERI;

ANIMALS; BACTERIAL PROTEINS; BIODIVERSITY; DNA, BACTERIAL; ECOSYSTEM; FISHES; LUMINESCENCE; MOLECULAR SEQUENCE DATA; PHOTOBACTERIUM; PHYLOGENY; RIBOFLAVIN; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SYMBIOSIS;

ACROPOMA JAPONICUM; ACROPOMATIDAE; ANIMALIA; APOGONIDAE; BACTERIA (MICROORGANISMS); CEPHALOPODA; GADELLA JORDANI; GADIFORMES; LEIOGNATHIDAE; LOLIGINIDAE; MORIDAE; PERCIFORMES; PHOTOBACTERIUM LEIOGNATHI; PHOTOBACTERIUM MANDAPAMENSIS; PHOTOPECTORALIS; PISCES; SIPHAMIA;

EID: 34249745219     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02212-06     Document Type: Article

References (44)

1. Ast, J. C., and P. V. Dunlap. 2004. Phylogenetic analysis of the lux operon distinguishes two evolutionary distinct clades of Photobacterium leiognathi. Arch. Microbiol. 181:352-361.
2. Ast, J. C., and P. V. Dunlap. 2005. Phylogenetic resolution and habitat specificity of the Photobacterium phosphoreum species group. Environ. Microbiol. 7:1641-1654.
3. Boisvert, H., R. Chatelain, and J. M. Bassot. 1967. Étude d'un Photobacterium isolé de l'organe lumineux des poissons Leiognathidae. Ann. Inst. Pasteur (Paris) 112:520-524.
4. Di Meo, C. A., A. E. Wilbur, W. E. Holben, R. A. Feldman, R. C. Vrijenhoek, and S. C. Cary. 2000. Genetic variation among endosymbionts of widely distributed vestimentiferan tubeworms. Appl. Environ. Microbiol. 66:651-658.
5. Dunlap, P. V. 1984. Physiological and morphological state of the symbiotic bacteria from light organs of ponyfish. Biol. Bull. 167:410-425.
6. Dunlap, P. V. 1985. Osmotic control of luminescence and growth in Photobacterium leiognathi from ponyfish light organs. Arch. Microbiol. 141:44-50.
7. Dunlap, P. V., and J. C. Ast. 2005. Genomic and phylogenetic characterization of the luminous bacteria symbiotic with the deep-sea fish Chlorophthalmus albatrossis (Aulopiformes: Chlorophthalmidae). Appl. Environ. Microbiol. 71:930-9399.
8. Dunlap, P. V., and K. Kita-Tsukamoto. 2006. Luminous bacteria, p. 863-892. In M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt (ed.), The prokaryotes, a handbook on the biology of bacteria, 3rd ed., vol. 2. Ecophysiology and biochemistry. Springer, New York, NY.
9. Dunlap, P. V., A. Jiemjit, J. C. Ast, M. M. Pearce, R. R. Marques, and C. R. Lavilla-Pitogo. 2004. Genomic polymorphism in symbiotic populations of Photobacterium leiognathi. Environ. Microbiol. 6:145-158.
10. Dunlap, P. V., J. C. Ast, S. Kimura, A. Fukui, T. Yoshino, and H. Endo. Phylogenetic analysis of host-symbiont specificity and codivergence in bioluminescent symbioses. Cladistics, in press.
11. Fidopiastis, P. M., S. von Boletzky, and E. G. Ruby. 1998. A new niche for Vibrio logei, the predominant light organ symbiont of squids in the genus Sepiola. J. Bacteriol. 180:59-64.
12. Fitzgerald, J. M. 1979. Studies on the taxonomy and bioluminescence of some luminous marine bacteria. Ph.D. thesis. Monash University, Victoria, Australia.
13. Fukasawa, S., and P. V. Dunlap. 1986. Identification of luminous bacteria isolated from the light organs of the squid, Doryteuthis kensaki. Agric. Biol. Chem. 50:1645-1646.
14. Fukasawa, S., T. Suda, and S. Kubota. 1988. Identification of luminous bacteria isolated from the light organ of the fish, Acropoma japonicum. Agric. Biol. Chem. 52:285-286.
15. Gauthier, G., B. Lafay, R. Ruimy, V. Breittmayer, J. L. Nicolas, M. Gauthier, and R. Christen. 1995. Small-subunit rRNA sequences and whole DNA relatedness concur for the reassignment of Pasteurella piscicida (Snieszko et al.) Janssen and Surgalla to the genus Photobacterium as Photobacterium damsela subsp. piscicida. Int. J. Syst. Bacteriol. 45:139-144.
16. Haneda, Y. 1966. Luminous apogonid fish from the Moreton Bay, Brisbane. Sci. Rep. Yokosuka City Mus. 12:1-3.
17. Hastings, J. W., and K. H. Nealson. 1981. The symbiotic luminous bacteria, p. 1332-1345. In M. P. Starr, H. Stolp, H. G. Trüper, A. Balows, and H. G. Schlegel (ed.), The prokaryotes: a handbook on habitats, isolation, and identification of bacteria. Springer-Verlag, Berlin, Germany.
18. Hendrie, M. S., W. Hodgkiss, and J. M. Shewan. 1970. The identification, taxonomy and classification of luminous bacteria. J. Gen. Microbiol. 64:151-169.
19. Herring, P. J., and J. G. Morin. 1978. Bioluminescence in fishes, p. 273-329. In P. J. Herring (ed.), Bioluminescence in action. Academic Press, London, England.
20. Karatani, H., T. Konaka, and C. Katsukawa. 2000. Properties of the bimodal fluorescent protein produced by Photobacterium phosphoreum. Photochem. Photobiol. 71:230-236.
21. Kimura, S., P. V. Dunlap, T. Peristiwady, and C. R. Lavilla-Pitogo. 2003. The Leiognathus aureus complex (Perciformes: Leiognathidae) with the description of a new species. Ichthyol. Res. 50:221-232.
22. Leis, J. M., and S. Bullock. 1986. The luminous cardinalfish Siphamia (Pisces, Apogonidae): development of larvae and the luminous organ, p. 703-714. In T. Uyeno, R. Arai, T. Taniuchi, and K. Matsuura (ed.), Indo-Pacific fish biology: proceedings of the second international conference on IndoPacific fishes. Ichthyological Society of Japan, Tokyo, Japan.
23. Meighen, E. A., and P. V. Dunlap. 1993. Physiological, biochemical and genetic control of bacterial bioluminescence. Adv. Microbial. Physiol. 34:1-67.
24. Nakabo, T. (ed.). 2002. Fishes of Japan with pictorial keys to the species, vol. 1 and 2 (English ed.). Tokai University Press, Tokyo, Japan.
25. Nealson, K. H. 1978. Isolation, identification and manipulation of luminous bacteria. Methods Enzymol. 57:153-166.
26. Nealson, K. H., and J. W. Hastings. 1977. Low oxygen is optimal for luciferase synthesis in some bacteria. Arch. Microbiol. 112:9-16.
27. Nelson, J. S. 2006. Fishes of the world, 4th ed. John Wiley & Sons, New York, NY.
28. Nishiguchi, M. K. 2000. Temperature affects species distribution in symbiotic populations of Vibrio spp. Appl. Environ. Microbiol. 66:3550-3555.
29. Nogi, Y., N. Masui, and C. Kato. 1998. Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment. Extremophiles 2:1-7.
30. O'Kane, D. J., and D. C. Prasher. 1992. Evolutionary origins of bacterial bioluminescence. Mol. Microbiol. 6:443-449.
31. Onarheim, A. M., R. Wiik, J. Burghardt, and E. Stackebrandt. 1994. Characterization and identification of two Vibrio species indigenous to the intestine of fish in cold sea water; description of Vibrio iliopiscarius sp. nov. Syst. Appl. Microbiol. 17:370-379.
32. Page, R. D. M. 2003. Introduction, p. 1-21. In R. D. M. Page (ed.), Tangled trees: phylogeny, cospeciation and coevolution. University of Chicago Press, Chicago, IL.
33. Reichelt, J. L., and P. Baumann. 1973. Taxonomy of the marine, luminous bacteria. Arch. Mikrobiol. 94:283-330.
34. Reichelt, J. L., and P. Baumann. 1975. Photobacterium leiognathi subsp. mandapamensis Hendrie et al., a later subjective synonym of Photobacterium leiognathi Boisvert et al. Int. J. Syst. Bacteriol. 25:208-209.
35. Reichelt, J. L., P. Baumann, and L. Baumann. 1976. Study of genetic relationships among marine species of the genera Beneckea and Photobacterium by means of in vitro DNA/DNA hybridization. Arch. Microbiol. 110:101-120.
36. Reichelt, J. L., K. Nealson, and J. W. Hastings. 1977. The specificity of symbiosis: pony fish and luminescent bacteria. Arch. Microbiol. 112:157-161.
37. Soly, R. R., J. A. Mancini, S. R. Ferri, M. Boylan, and E. A. Meighen. 1988. A new lux gene in bioluminescent bacteria codes for a protein homologous to the bacterial luciferase subunits. Biochem. Biophys. Res. Commun. 155:351-358.
38. Sparks, J. S., P. V. Dunlap, and W. L. Smith. 2005. Evolution and diversification of a sexually dimorphic luminescent system in ponyfishes (Teleostei: Leiognathidae), including diagnoses for two new genera. Cladistics 21:305-327.
39. Swofford, D. L. 2003. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0 B10. Sinauer Associates, Sunderland, MA.
40. Versalovic, J., J. Schneider, F. J. de Bruijn, and J. R. Lupski. 1994. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell. Biol. 5:25-40.
41. Wada, M., A. Kamiya, N. Uchiyama, et al. 2006. luxA gene of light organ symbionts of the bioluminescent fish Acropoma japonicum (Acropomatidae) and Siphamia versicolor (Apogonidae) forms a lineage closely related to that of Photobacterium leiognathi ssp. mandapamensis. FEMS Microbiol. Lett. 260:186-192.
42. Wheeler, W., D. Gladstein, and J. De Laet. 2003. POY, phylogeny reconstruction via optimization of DNA and other data, version 3.0.11. American Museum of Natural History, New York, NY. ftp://ftp.amnh.org/pub/people/wheeler/ poy/version3-current/poy.3.0.11.pdf.
43. Wimpee, C. F., T.-L. Nadeau, and K. H. Nealson. 1991. Development of species-specific hybridization probes for marine luminous bacteria using in vitro DNA amplification. Appl. Environ. Microbiol. 57:1319-1324.
44. Yoshiba, S., and Y. Haneda. 1967. Bacteriological study on the symbiotic luminous bacteria cultivated from the luminous organ of the apogonid fish, Siphamia versicolor and the Australian pine cone fish, Cleidopus gloria-maris. Sci. Rep. Yokosuka City Mus. 13:82-84.