Genetic biodiversity of Mycobacterium tuberculosis isolates from patients with pulmonary tuberculosis in India

Infection, Genetics and Evolution

Volumn 7, Issue 4, 2007, Pages 441-448

  Singh, Urvashi Balbir ^a   Arora, Jyoti ^a   Suresh, Naga ^a   Pant, Hema ^a   Rana, Tanu ^a   Sola, Christophe ^c   Rastogi, Nalin ^c   Pande, Jitendra Nath ^b  

^a ALL INDIA INSTITUTE OF MEDICAL SCIENCES   (India)

^b SITARAM BHARTIA INSTITUTE OF SCIENCE AND RESEARCH   (India)

^c Institut Pasteur de Guadeloupe   (Guadeloupe)

Author keywords

Clade; Shared type; Spoligotyping; Tuberculosis

Indexed keywords

ADOLESCENT; ADULT; ARTICLE; ASIAN; BACTERIAL GENETICS; BACTERIUM ISOLATE; BIODIVERSITY; CLADISTICS; CLUSTER ANALYSIS; CONTROLLED STUDY; DISEASE TRANSMISSION; ETHNIC DIFFERENCE; FEMALE; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HUMAN; INDIA; INDIAN; LUNG TUBERCULOSIS; MAJOR CLINICAL STUDY; MALE; MOLECULAR CLONING; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PRIORITY JOURNAL; SPUTUM SMEAR; THORAX RADIOGRAPHY;

BACTERIAL TYPING TECHNIQUES; BIODIVERSITY; GEOGRAPHY; HUMANS; INDIA; MYCOBACTERIUM TUBERCULOSIS; TUBERCULOSIS, PULMONARY; VARIATION (GENETICS);

BACILLI (CLASS); MYCOBACTERIUM TUBERCULOSIS;

EID: 34249730056     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2007.01.003     Document Type: Article

References (34)

1. Anh D.D., Borgdorff M.W., Van L.N., Lan N.T., van Gorkom T., Kremer K., and van Soolingen D. Mycobacterium tuberculosis Beijing genotype emerging in Vietnam. Emerg. Infect. Dis. 6 (2000) 302-305
2. Bauer J., Andersen A.B., Kremer K., and Miorner H. Usefulness of spoligotyping to discriminate IS6110 low-copy-number Mycobacterium tuberculosis complex strains cultured in Denmark. J. Clin. Microbiol. 37 (1999) 2602-2606
3. Brosch R., Gordon S.V., Marmiesse M., Brodin P., Buchrieser C., Eiglmeier K., Garnier T., Gutierrez C., Hewinson G., Kremer K., Parsons L.M., Pym A.S., Samper S., van Soolingen D., and Cole S.T. A new evolutionary scenario for the Mycobacterium tuberculosis complex. Proc. Natl. Acad. Sci. 99 (2002) 3684-3689
4. Bhanu N.V., van Soolingen D., van Embden J.D., Dar L., Pandey R.M., and Seth P. Predominance of a novel Mycobacterium tuberculosis genotype in the Delhi region of India. Tuberculosis 82 (2002) 105-112
5. Brudey K., Filliol I., Sola C., Bebear C., Elia-Pasquet S., Texier-Maugein J., and Rastogi N. Molecular characterization and biodiversity of Mycobacterium tuberculosis in the Antilles-Guiana region and comparative analysis in a metropolitan region, Aquitaine. Pathol. Biol. 51 (2003) 282-289
6. Brudey K., Gordon M., Mostrom P., Svensson L., Jonsson B., Sola C., Ridell M., and Rastogi N. Molecular epidemiology of Mycobacterium tuberculosis in western Sweden. J. Clin. Microbiol. 42 (2004) 3046-3051
7. Brudey K., Driscoll J., Rigouts L., Prodinger W., Gori A., Al-Hajoj S., Allix C., Aristimuno L., Arora J., Baumanis V., Binder L., Cafrune P., Cataldi A., Cheong S., Diel R., Ellermeier C., Evans J., Fauville-Dufaux M., Ferdinand S., de Viedma D.G., Garzelli C., Gazzola L., Gomes H., Gutierrez M.C., Hawkey P., van Helden P., Kadival G., Kreiswirth B., Kremer K., Kubin M., Kulkarni S., Liens B., Lillebaek T., Minh Ly H., Martin C.C., Martin, Mokrousov I., Narvskaia O., Ngeow Y.F., Naumann L., Niemann S., Parwati I., Rahim M., Rasolofo-Razanamparany V., Rasolonavalona T., Rossetti M.L., Rusch-Gerdes S., Sajduda A., Samper S., Shemyakin I., Singh U., Somoskovi A., Skuce R., van Soolingen D., Streicher E., Suffys P., Tortoli E., Tracevska T., Vincent V., Victor T., Warren R., Yap S.F., Zaman K., Portaels F., Rastogi N., and Sola C. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classify cation, population genetics and epidemiology. BMC Microbiol. 6 (2006) 6-23
8. Chadha V.K. Epidemiological situation of tuberculosis in India. J. Indian Med. Assoc. 101 (2003) 144-147
9. Chakraborty A.K. Prevalence and Incidence of Tuberculosis in India: A Comprehensive Review (1997), WHO TB/97.231
10. Dale J.W., Nor R.M., Ramayah S., Tang T.H., and Zainuddin Z.F. Molecular epidemiology of tuberculosis in Malaysia. J. Clin. Microbiol. 37 (1999) 1265-1268
11. Das S., Paramasivam C.N., Lowrie D.B., Prabhakar R., and Narayanan P.R. IS6110 restriction fragment length polymorphism typing of clinical isolates of Mycobacterium tuberculosis from patients with pulmonary tuberculosis in Madras, south India. Tuber. Lung Dis. 76 (1995) 550-554
12. Filliol I., Driscoll J.R., Van Soolingen D., Kreiswirth B.N., Kremer K., Valetudie G., Anh D.D., Barlow R., Banerjee D., Bifani P.J., Brudey K., Cataldi A., Cooksey R.C., Cousins D.V., Dale J.W., Dellagostin O.A., Drobniewski F., Engelmann G., Ferdinand S., Gascoyne-Binzi D., Gordon M., Gutierrez M.C., Haas W.H., Heersma H., Kallenius G., Kassa-Kelembho E., Koivula T., Ly H.M., Makristathis A., Mammina C., Martin G., Mostrom P., Mokrousov I., Narbonne V., Narvskaya O., Nastasi A., Niobe-Eyangoh S.N., Pape J.W., Rasolofo-Razanamparany V., Ridell M., Rossetti M.L., Stauffer F., Suffys P.N., Takiff H., Texier-Maugein J., Vincent V., De Waard J.H., Sola C., and Rastogi N. Global distribution of Mycobacterium tuberculosis spoligotypes. Emerg. Infect. Dis. 8 (2002) 1347-1349
13. Filliol I., Driscoll J.R., Van Soolingen D., Kreiswirth B.N., Kremer K., Valetudie G., Dang D.A., Barlow R., Banerjee D., Bifani P.J., Brudey K., Cataldi A., Cooksey R.C., Cousins D.V., Dale J.W., Dellagostin O.A., Drobniewski F., Engelmann G., Ferdinand S., Gascoyne-Binzi D., Gordon M., Gutierrez M.C., Haas W.H., Heersma, Kassa-Kelembho E., Ho M.L., Makristathis A., Mammina C., Martin G., Mostrom P., Mokrousov I., Narbonne V., Narvskaya O., Nastasi A., Niobe-Eyangoh S.N., Pape J.W., Rasolofo-Razanamparany V., Ridell M., Rossetti M.L., Stauffer F., Suffys P.N., Takiff H., Texier-Maugein J., Vincent V., De Waard J.H., Sola C., and Rastogi N. Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study. J. Clin. Microbiol. 41 (2003) 1963-1970
14. Glynn J.R., Whiteley J., Bifani P.J., Kremer K., and van Soolingen D. Worldwide occurrence of Beijing/W strains of Mycobacterium tuberculosis: a systematic review. Emerg. Infect. Dis. 8 (2002) 843-849
15. Gutierrez M.C., Ahmed N., Willery E., Narayanan S., Hasnain S.E., Chauhan D.S., Katoch V.M., Vincent V., Locht C., and Supply P. Predominance of ancestral lineages of Mycobacterium tuberculosis in India. Emerg. Infect. Dis. 12 (2006) 1367-1374
16. Hermans P.W., Messadi F., Guebrexabher H., van Soolingen D., de Haas P.E., Heersma H., de Neeling H., Ayoub A., Portaels F., and Frommel D. Analysis of the population structure of Mycobacterium tuberculosis in Ethiopia, Tunisia, and The Netherlands: usefulness of DNA typing for global tuberculosis epidemiology. J. Infect. Dis. 171 (1995) 1504-1513
17. Kamerbeek J., Schouls L., Kolk A., van Agterveld M., van Soolingen D., Kuijper S., Bunschoten A., Molhuizen H., Shaw R., Goyal M., and van Embden J. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J. Clin. Microbiol. 35 (1997) 907-914
18. Kremer K., van Soolingen D., Frothingham R., Haas W.H., Hermans P.W., Martin C., Palittapongarnpim P., Plikaytis B.B., Riley L.W., Yakrus M.A., Musser J.M., and van Embden J.D. Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility. J. Clin. Microbiol. 37 (1999) 2607-2618
19. Kulkarni S., Sola C., Filliol I., Rastogi N., and Kadival G. Spoligotyping of Mycobacterium tuberculosis isolates from patients with pulmonary tuberculosis in Mumbai, India. Res. Microbiol. 156 (2005) 588-596
20. Laszlo, Rahman M., Raviglione M., and Bustreo F. Network of Supranational Reference Laboratories. Quality assurance programme for drug susceptibility testing of Mycobacterium tuberculosis in the WHO/IUALTD Supranational Laboratory Network: first round of proficiency testing. Int. J. Tuber. Lung Dis. 1 (1997) 231-238
21. Manca C., Tsenova L., Bergtold A., Freeman S., Tovey M., Musser J.M., Barry III C.E., Freedman V.H., and Kaplan G. Virulence of a Mycobacterium tuberculosis clinical isolate in mice is determined by failure to induce Th1 type immunity and is associated with induction of IFN-alpha/beta. Proc. Natl. Acad. Sci. 98 (2001) 5752-5757
22. Mistry N.F., Iyer A.M., D'souza D.T., Taylor G.M., Young D.B., and Antia N.H. Spoligotyping of Mycobacterium tuberculosis isolates from multiple-drug-resistant tuberculosis patients from Bombay, India. J. Clin. Microbiol. 40 (2002) 2677-2680
23. Narayanan S., Das S., Garg R., Hari L., Rao V.B., Frieden T.R., and Narayanan P.R. Molecular epidemiology of tuberculosis in a rural area of high prevalence in South India: implications for disease control and prevention. J. Clin. Microbiol. 40 (2002) 4785-4788
24. Narayanan S., Sahadevan R., Narayanan P.R., Krishnamurthy P.V., Paramasivan C.N., and Prabhakar R. Restriction fragment length polymor-phism of Mycobacterium tuberculosis strains from various regions of India, using direct repeat probe. Indian J. Med. Res. 106 (1997) 447-454
25. Niobe-Eyangoh S.N., Kuaban C., Sorlin P., Cunin P., Thonnon J., Sola C., Vincent V., and Gutierrez M.C. Genetic biodiversity of Mycobacterium tuberculosis complex strains from patients with pulmonary tuberculosis in Cameroon. J. Clin. Microbiol. 41 (2003) 2547-2553
26. Olive D.M., and Bean P. Principles and Applications of Methods for DNA-Based Typing of Microbial Organisms. J. Clin. Microbiol. 37 (1999) 1661-1669
27. Puustinen K., Marjamaki M., Rastogi N., Sola C., Filliol I., Ruutu P., Holmstrom P., Viljanen M.K., and Soini H. Characterization of Finnish Mycobacterium tuberculosis isolates by spoligotyping. J. Clin. Microbiol. 41 (2003) 1525-1528
28. Radhakrishnan I., Manju Y.K., Kumar R.A., Mundayoor S., and Harris. Implications of low frequency of IS6110 in fingerprinting field isolates of Mycobacterium tuberculosis from Kerala, India. J. Clin. Microbiol. 39 (2001) 1683
29. Siddiqi N., Shamim M., Amin A., Chauhan D.S., Das R., Srivastava K., Singh D., Sharma V.D., Katoch V.M., Sharma S.K., Hanief M., and Hasnain S.E. Typing of drug resistant isolates of Mycobacterium tuberculosis from India using the IS6110 element reveals substantive polymorphism. Infect. Genet. Evol. 1 (2001) 109-116
30. Singh U.B., Suresh N., Bhanu N.V., Arora J., Pant H., Sinha S., Aggarwal R.C., Singh S., Pande J.N., Sola C., Rastogi N., and Seth P. Predominant tuberculosis spoligotypes, Delhi, India. Emerg. Infect. Dis. 10 (2004) 1138-1142
31. Soini H., Pan X., Amin A., Graviss E.A., Siddiqui A., and Musser J.M. Characterization of Mycobacterium tuberculosis isolates from patients in Houston, Texas, by spoligotyping. J. Clin. Microbiol. 38 (2000) 669-676
32. Sola C., Ferdinand S., Sechi L.A., Zanetti S., Martial D., Mammina C., Nastasi A., Fadda G., and Rastogi N. Mycobacterium tuberculosis molecular evolution in western Mediterranean Islands of Sicily and Sardinia. Infect. Genet. Evol. 5 (2005) 145-156
33. Sreevatsan S., Pan X., Stockbauer K.E., Connell N.D., Kreiswirth B.N., Whittam T.S., and Musser J.M. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc. Natl. Acad. Sci. 94 (1997) 9869-9874
34. Suresh N., Singh U.B., Arora J., Pant H., Seth P., Sola C., Rastogi N., Samantaray J.C., and Pande J.N. rpoB gene sequencing and spoligotyping of multidrug-resistant Mycobacterium tuberculosis isolates from India. Infect. Genet. Evol. 6 (2006) 474-483