Heterovibrational interactions, cooperative hydrogen bonding, and vibrational energy relaxation pathways in a rotaxane

Journal of Physical Chemistry C

Volumn 111, Issue 18, 2007, Pages 6798-6804

  Bodis, Pavol ^a,b   Timmer, Rutger ^b   Yeremenko, Sergey ^b   Buma, Wybren Jan ^a   Hannam, Jeffrey S ^c   Leigh, David A ^c   Woutersen, Sander ^a,b  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

^b FOM INSTITUTE AMOLF   (Netherlands)

^c UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANISOTROPY; HYDROGEN BONDS; INFRARED SPECTROSCOPY; MOLECULAR INTERACTIONS; MOLECULAR VIBRATIONS;

HYDROGEN-BOND ACCEPTORS; MOLECULAR DEVICES; ROTAXANE; VIBRATIONAL RELAXATION;

AMIDES;

EID: 34249726553     PISSN: 19327447     EISSN: 19327455     Source Type: Journal    
DOI: 10.1021/jp070463s     Document Type: Article

References (53)

1. For recent reviews, see: (a) Balzani, V.; Venturi, M.; Credi, A. Molecular Devices and Machines. A Journey into the Nanoworld; Wiley-VCH: Weinheim, Germany, 2003.
2. (b) Flood, A. H.; Ramirez, R. J. A.; Deng, W. Q.; Muller, R. P.; Goddard, W. A.; Stoddart, J. F. Aust. J. Chem. 2004, 57, 301.
3. (c) Kay, E. R.; Leigh, D. A. In Functional Artificial Receptors; Schrader, T., Hamilton, A. D., Eds.; Wiley-VCH: Weinheim, Germany, 2005; pp 333-406.
4. For recent examples, see: (a) Balzani, V.; Credi, A.; Silvi, S.; Stoddart, J. F. Science 2004, 303, 1845.
5. (b) Fletcher, S. P.; Dumur, F.; Pollard, M. M.; Feringa, B. L. Science 2005, 310, 80.
6. (c) Bern, J.; Leigh, D. A.; Lubomska, M.; Mendoza, S. M.; Pérez, E. M.; Rudolf, P.; Teobaldi, G.; Zerbetto, F. Nature Mater. 2005, 4, 70.
7. (d) Nguyen, T. D.; Tseng, H.-R.; Celestre, P. C.; Flood, A. H.; Liu, Y.; Stoddart, J. F.; Zink, J. I. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 10029.
8. (e) Eelkema, R.; Pollard, M. M.; Vicario, J.; Katsonis, N.; Serrano Ramon, B.; Bastiaansen, C. W. M.; Broer, D. J.; Feringa, B. L. Nature 2006, 440, 163.
9. Oxtoby, D. W. Adv. Chem. Phys. 1981, 47, 487.
10. Owrutski, J. C.; Raftery, D.; Hochstrasser, R. M. Annu. Rev. Phys. Chem. 1994, 45, 519.
11. Zhang, W. M.; Chernyak, V.; Mukamel, S. J. Chem. Phys. 1999, 110, 5011.
12. Hamm, P.; Lim, M.; DeGrado, W. F.; Hochstrasser, R. M. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 2036.
13. Golonzka, O.; Khalil, M.; Demirdöven, N.; Tokmakoff, A. Phys. Rev. Lett. 2001, 86, 2154.
14. Jonas, D. M. Science 2003, 300, 1515.
15. Stolow, A.; Jonas, D. M. Science 2004, 305, 1575.
16. Zanni, M. T.; Ge, N. H.; Kim, Y. S.; Hochstrasser, R. M. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 11265.
17. Ernst, R. R.; Bodenhausen, G.; Wokaun, A. Principles of Nuclear Magnetic Resonance in One and Two Dimensions; Clarendon Press: Oxford, U.K., 1987.
18. Krimm, S.; Bandekar, J. Adv. Protein Chem. 1986, 38, 181.
19. Torii, H.; Tasumi, M. J. Roman Spectrosc. 1998, 29, 81.
20. Cheatum, C. M.; Tokmakoff, A.; Knoester, J. J. Chem. Phys. 2004, 120, 8201.
21. Moran, A.; Mukamel, S. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 506.
22. Scheurer, C.; Mukamel, S. J. Chem. Phys. 2002, 116, 6803.
23. Sauvage, J.-P., Dietrich-Bucheker, C., Eds. Molecular Catenanes, Rotaxanes and Knots; Wiley-VCH: Weinheim, Germany, 1999.
24. Kay, E. R.; Leigh, D. A. Top. Curr. Chem. 2005, 262, 133.
25. (a) Brouwer, A. M.; Frochot, C.; Gatti, F. G.; Leigh, D. A.; Mottier, L.; Paolucci, F.; Roffia, S.; Wurpel, G. W. H. Science 2001, 291, 2124.
26. (b) Leigh, D. A.; Wong, J. K. Y.; Dehez, F.; Zerbetto, F. Nature 2003, 424, 174.
27. (c) Leigh, D. A.; Morales, M. A. F.; Pérez, E. M.; Wong, J. K. Y.; Saiz, C. G.; Slawin, A. M. Z.; Carmichael, A. J.; Haddleton, D. M.; Brouwer, A. M.; Buma, W. J.; Wurpel, G. W. H.; León, S.; Zerbetto, F. Angew. Chem., Int. Ed. 2005, 44, 3062.
28. (d) Marlin, D. S.; Gonzalez Cabrera, D.; Leigh, D. A.; Slawin, A. M. Z. Angew. Chem., Int. Ed. 2006, 45, 1385.
29. Leigh, D. A.; Wong, J. K. Y.; Dehez, F.; Zerbetto, F. Nature 2003, 424, 174.
30. Hernandez, J. V.; Kay, E. R.; Leigh, D. A. Science 2004, 306, 1532.
31. Serreli, V.; Lee, C.-F.; Kay, E. R.; Leigh, D. A. Nature 2007, 445, 523.
32. Scheurer, C.; Mukamel, S. J. Chem. Phys. 2001, 115, 4989.
33. Rubtsov, I. V.; Wang, J.; Hochstrasser, R. M. J. Phys. Chem. A 2003, 107, 3384.
34. Kurochkin, D. V.; Naraharisetty, S. R. G.; Rubtsov, I. V. J. Phys. Chem. A 2005, 109, 10799-10802.
35. Park, J.; Hochstrasser, R. M. Chem. Phys. 2006, 323, 78.
36. The term co-conformation refers to the relative positions of noncovalently bonded or mechanically interlocked components with respect to each other (Fyfe, M. C. T.; Glink, P. T.; Menzer, S.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. Angew. Chem., Int. Ed. Engl. 1997, 36, 2068).
37. Kolano, C.; Helbing, J.; Kozinski, M.; Sander, W.; Hamm, P. Nature 2006, 444, 469.
38. Larsen, O. F. A.; Bodis, P.; Buma, W. J.; Hallam, J. S.; Leigh, D. A.; Woutersen, S. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 13378.
39. Mukamel, S. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 13717.
40. Altieri, A.; Gatti, F. G.; Kay, E. R.; Leigh, D. A.; Martel, D.; Paolucci, F.; Slawin, A. M. Z.; Wong, J. K. Y. J. Am. Chem. Soc. 2003, 125, 8644.
41. Hamm, P.; Kaindl, R. A.; Stenger, J. Opt. Lett. 2000, 25, 1798.
42. Mukamel, S. Principles of Nonlinear Optical Spectroscopy; Oxford University Press: Oxford, U.K., 1995.
43. Woutersen, S.; Emmerichs, U.; Bakker, H. J. J. Chem. Phys. 1997, 107, 1483.
44. Woutersen, S.; Mu, Y.; Stock, G.; Hamm, P. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 11254.
45. Rubtsov, I. V.; Wang, J.; Hochstrasser, R. M. J. Chem. Phys. 2003, 118, 7733.
46. Hahn, S.; Kwak, K.; Cho, M. J. Chem. Phys. 2000, 112, 4553.
47. Lee, C.; Park, K.-H.; Cho, M. J. Chem. Phys. 2006, 125, 114508.
48. Hadži, D.; Bratos, S. In The Hydrogen Bond; Schuster, P., Zundel, G., Sandorfy, C., Eds.; Elsevier: Amsterdam, The Netherlands, 1976; Vol II, Chapter 12.
49. Dickerson, R. E.; Drew, H. R.; Conner, B. N.; Wing, R. M.; Fratini, A. V.; Kopka, M. L. Science 1982, 216, 475.
50. Berman, H. M.; Schneider, B. In Nucleic Acid Structure; Neidle, S., Ed.; Oxford University Press: Oxford, U.K., 1999; Chapter 9.
51. Walsh, S. T. R.; Cheng, R. P.; Wright, W. W.; Alonso, D. O. V.; Daggett, V.; Vanderkooi, J. M.; DeGrado, W. F. Protein Sci. 2003, 12, 520.
52. Rubtsov, I. V.; Kumar, K.; Hochstrasser, R. M. Chem. Phys. Lett. 2005, 402, 439.
53. m.cycle). The values given in the text are the averages of these values.