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Volumn 7, Issue 1, 2007, Pages 95-99

GUIMACS - A Java based front end for GROMACS

Author keywords

GROMACS; GUI front end; Java interface; Molecular dynamics

Indexed keywords

ALGORITHM; ARTICLE; AUTOMATION; BIOINFORMATICS; COMPUTER INTERFACE; COMPUTER LANGUAGE; COMPUTER PROGRAM; COMPUTER SIMULATION; MOLECULAR DYNAMICS; PROCESS OPTIMIZATION;

EID: 34249704620     PISSN: 13866338     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (16)

References (9)
  • 1
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    • Bicycle-pedal model for the first step in the vision process
    • Warshel, A. (1976). Bicycle-pedal model for the first step in the vision process. Nature 260, 679-683.
    • (1976) Nature , vol.260 , pp. 679-683
    • Warshel, A.1
  • 2
    • 0017776823 scopus 로고
    • Dynamics of folded proteins
    • McCammon, J. A., Gelin, B. R and Karplus, M. (1977). Dynamics of folded proteins. Nature 267, 585-590.
    • (1977) Nature , vol.267 , pp. 585-590
    • McCammon, J.A.1    Gelin, B.R.2    Karplus, M.3
  • 3
    • 0024094768 scopus 로고
    • Accurate simulation of protein dynamics in solution
    • Levitt, M. and Sharon, R. (1988). Accurate simulation of protein dynamics in solution. Proc. Natl. Acad. Sci. 85, 7557-7561.
    • (1988) Proc. Natl. Acad. Sci , vol.85 , pp. 7557-7561
    • Levitt, M.1    Sharon, R.2
  • 4
    • 0032561237 scopus 로고    scopus 로고
    • Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous simulation
    • Duan, Y. and Kollman, P. A. (1998). Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous simulation. Science 282, 740-744.
    • (1998) Science , vol.282 , pp. 740-744
    • Duan, Y.1    Kollman, P.A.2
  • 5
    • 0036725277 scopus 로고    scopus 로고
    • Molecular dynamics simulations of biomolecules
    • Karplus, M. and McCammon, J. A. (2002). Molecular dynamics simulations of biomolecules. Nat. Struct. Biol. 9, 646-652.
    • (2002) Nat. Struct. Biol , vol.9 , pp. 646-652
    • Karplus, M.1    McCammon, J.A.2
  • 6
    • 0025048105 scopus 로고
    • Molecular dynamics simulations in biology
    • Karplus, M. and Petsko, G. A. (1990). Molecular dynamics simulations in biology. Nature 347, 631-639.
    • (1990) Nature , vol.347 , pp. 631-639
    • Karplus, M.1    Petsko, G.A.2
  • 7
    • 0023140044 scopus 로고
    • Multiple conformational states of proteins: A molecular dynamics analysis of myoglobin
    • Elber, R. and Karplus, M. (1987). Multiple conformational states of proteins: A molecular dynamics analysis of myoglobin. Science 235, 318-321.
    • (1987) Science , vol.235 , pp. 318-321
    • Elber, R.1    Karplus, M.2
  • 8
    • 0035789518 scopus 로고    scopus 로고
    • GROMACS 3.0: A package for molecular simulation and trajectory analysis
    • Lindahl, E., Hess, B. and Van der Spoel, D. (2001). GROMACS 3.0: A package for molecular simulation and trajectory analysis. J. Mol. Model. 7, 306-317.
    • (2001) J. Mol. Model , vol.7 , pp. 306-317
    • Lindahl, E.1    Hess, B.2    Van der Spoel, D.3
  • 9
    • 0029170114 scopus 로고
    • Molecular dynamics simulations on solvated biomolecular systems: The Particle Mesh Ewald method leads to stable trajectories of DNA, RNA and proteins
    • Cheatham, T. E. III, Miller, J. L., Fox, T., Darden, T. A. and Kollman, P. A. (1995). Molecular dynamics simulations on solvated biomolecular systems: The Particle Mesh Ewald method leads to stable trajectories of DNA, RNA and proteins. J. Am. Chem. Soc. 117, 4193-4194.
    • (1995) J. Am. Chem. Soc , vol.117 , pp. 4193-4194
    • Cheatham III, T.E.1    Miller, J.L.2    Fox, T.3    Darden, T.A.4    Kollman, P.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.