Bacillus decisifrondis sp. nov., isolated from soil underlying decaying leaf foliage

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 5, 2007, Pages 974-978

  Zhang, Li ^a   Xu, Zhihong ^a   Patel, Bharat K C ^a  

^a GRIFFITH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

2 OXOBUTYRIC ACID; ACONITIC ACID; ALANINE; ALPHA CYCLODEXTRIN; ALPHA LACTOSE; BACTERIAL DNA; CATALASE; CYTOSINE; ETHANOLAMINE; GLYCEROL; GUANINE; HYDROXYBUTYRIC ACID; INOSINE; LACTONE; OXIDOREDUCTASE; PROLINE; PSICOSE; PYRUVIC ACID; RAFFINOSE; RHAMNOSE; RNA 16S; SORBITOL; THYMIDINE; URIDINE; UROCANIC ACID;

AEROBIC BACTERIUM; ANIMAL CELL; ARTICLE; AUSTRALIA; BACILLUS; BACILLUS DECISIFRONDIS; BACILLUS SPHAERICUS; BACTERIAL CELL; BACTERIAL CELL WALL; BACTERIAL FLAGELLUM; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL SPORE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CELL SHAPE; CELL ULTRASTRUCTURE; CONTROLLED STUDY; CYTOCHEMISTRY; DENATURATION; DNA CONTENT; ELECTRON MICROSCOPY; FIRMICUTES; FOLIAGE; FOREST; GRAM POSITIVE BACTERIUM; LEAF LITTER; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; PHYLUM; PINE; PLANT LEAF; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; SOIL MICROFLORA; SPECIES IDENTIFICATION; TEMPERATURE;

AMINO ACIDS; AUSTRALIA; BACILLUS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CARBOHYDRATE METABOLISM; CELL WALL; CULTURE MEDIA; DNA, BACTERIAL; DNA, RIBOSOMAL; FLAGELLA; GENES, RRNA; HYDROGEN-ION CONCENTRATION; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOIL MICROBIOLOGY; SPORES, BACTERIAL; TEMPERATURE; THYMIDINE; TREES; URIDINE;

BACILLI (CLASS); BACILLUS (BACTERIUM); BACILLUS ODYSSEYI; BACILLUS SPHAERICUS; BACTERIA (MICROORGANISMS); FIRMICUTES; PINUS ELLIOTTII; POSIBACTERIA;

EID: 34249076558     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64440-0     Document Type: Article

References (25)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Andrews, K. T. & Patel, B. K. C. (1996). Fervidobacterium gondwanense sp. nov., a new thermophilic anaerobic bacterium isolated from nonvolcanically heated geothermal waters of the Great Artesian Basin of Australia. Int J Syst Bacteriol 46, 265-269.
3. Ash, C., Farrow, J. A. E., Wallbanks, S. & Collins, M. D. (1991). Phylogenetic heterogeneity of the genus Bacillus as revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett Appl Microbiol 13, 202-206.
4. Chester, F. D. (1898). Report of the mycologist: Bacteriological work. Del Agric Exp Stn Annu Rep 10, 47-137.
5. Cole, J. R., Chai, B., Farris, R. J., Wang, Q., Kulam, S. A., McGarrell, D. M., Garrity, G. M. & Tiedje, J. M. (2005). The Ribosomal Database Project (RDP-II): Sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res 33(Database issue), D294-D296.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
7. Fortina, M. G., Pukall, R., Schumann, P., Mora, D., Parini, C. P., Manachini, L. & Stackebrandt, E. (2001). Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson et al. 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov. Int J Syst Evol Microbiol 51 , 447-455.
8. Garrity, G. M. & Holt J. G. (2001). The road map to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, The Archaea and the Deeply Branching and Phototrophic Bacteria, pp. 119-166. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York Springer.
9. Hall, T. A. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
10. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-123. Edited by H. N. Munro. New York. Academic Press.
11. Kanso, S. & Patel, B. K. C. (2003). Microvirga subterranea gen. nov., sp. nov., a moderate thermophile from a deep subsurface Australian thermal aquifer. Int J Syst Evol Microbiol 53, 401-406.
12. La Dur, M. T., Satomi, M. & Venkateswaran, K. (2004). Bacillus odysseyi sp nov., a round-spore-forming bacillus isolated from the Mars Odyssey spacecraft. Int J Syst Evol Microbiol 54, 195-201.
13. Ludwig, W., Strunk O., Westram, R., Richter, L., Meier, H., Yadhukumar Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: A software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
14. Marmur, J. & Doty, P. (1961). Thermal renaturation of deoxyribonucleic acids. J Mol Biol 3, 585-594.
15. Nakamura, L. K. (2000). Phylogeny of Bacillus sphaericus-like organisms. Int J Syst Evol Microbiol 50, 1715-1722.
16. Nakamura, L. K., Shida, O, Takagi, H. & Komagata, K. (2002). Bacillus pycnus sp. nov. and Bacillus neidei sp. nov., round-spored bacteria from soil. Int J Syst Evol Microbiol 52, 501-505.
17. Neide, E (1904). Botanische Beschreibung einiger sporebildenden Bakterien. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt II 12, 337-352.
18. Priest, F. G., Goodfellow, M. & Todd, C. (1988). A numerical classification of the genus Bacillus. J Gen Microbiol 134, 1847-1882.
19. Rheims, H, Fruhling, A., Schumann, P., Rohde, M. & Stackebrandt, E. (1999). Bacillus silvestris sp. nov., a new member of the genus Bacillus that contains lysine in its cell wall. Int J Syst Bacteriol 49, 795-802.
20. Sait M., Hugenholtz, P. & Janssen, P. H. (2002). Cultivation of globally distributed sod bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ Microbiol 4, 654-666.
21. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
22. Spanevello, M. D., Yamamoto, H. & Patel, B. K. (2002). Thermaerobacter subterraneus sp. nov., a novel aerobic bacterium from the Great Artesian Basin of Australia, and emendation of the genus Thermaerobacter. Int J Syst Evol Microbiol 52, 795-800.
23. Tiedje, J. M., Asuming-Brempong, S., Nüsslein, K., March, T. L. & Flynn, S. J. (1999). Opening the black box of soil microbial diversity. Appl Soil Ecol 13, 109-122.
24. Van de Peer, Y., Jansen, J., De Rijk P. & De Wachter, P. (1997). Database on the structure of small ribosomal subunit RNA. Nucleic Acids Res 25, 111-116.
25. Yoon, J. H., Lee, K C., Weiss, N., Kho, Y. H., Kang, K. H. & Park, Y. H. (2001). Sporosarcina aquimarina sp. nov., a bacterium isolated from seawater in Korea, and transfer of Bacillus globisporus (Larkin and Stokes 1967), Bacillus psychrophilus (Nakamura 1984) and Bacillus pasteurii (Chester 1898) to the genus Sporosarcina as Sporosarcina globispora comb. nov., Sporosarcina psychrophila comb. nov and Sporosarcina pasteurii comb. nov., and emended description of the genus Sporosarcina. Int J Syst Evol Microbiol 51, 1079-1086.