Description of Labrenzia alexandrii gen. nov., sp. nov., a novel alphaproteobacterium containing bacteriochlorophyll a, and a proposal reclassification of Stappia aggregata as Labrenzia aggregata comb. nov., and of Stappia alba as Labrenzia alba comb. nov., and emended descriptions of the genera Pannonibacter, Stappia and Roseibium, and of the species Roseibium denhamense and Roseibium hamelinense

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 5, 2007, Pages 1095-1107

  Biebl, Hanno ^a,d   Pukall, Rüdiger ^b   Lünsdorf, Heinrich ^a   Schulz, Stefan ^c   Allgaier, Martin ^a,e   Tindall, Brian J ^b   Wagner Döbler, Irene ^a  

^a HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^c TECHNICAL UNIVERSITY OF BRAUNSCHWEIG   (Germany)

^d Leibniz Institut für Gewässerökologie und Binnenfischerei ^*  (Germany)

^e LEIBNIZ INSTITUTE OF FRESHWATER ECOLOGY AND INLAND FISHERIES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOCHLOROPHYLL A; BIOTIN; CARDIOLIPIN; CAROTENOID; FATTY ACID; GLYCEROPHOSPHOLIPID; GROWTH FACTOR; GUANINE NUCLEOTIDE; INDOLE; NITRATE; ORGANIC CARBON; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLMETHYLETHANOLAMINE; POTASSIUM; PYRIMIDINE NUCLEOTIDE; RNA 16S; SODIUM CHLORIDE; SUGAR; SULFOQUINOVOSYLDIACYLGLYCERIDE; TELLURIUM DERIVATIVE; THIAMINE; TRYPTOPHAN; UBIDECARENONE; UNCLASSIFIED DRUG;

AEROBIC BACTERIUM; ALEXANDRIUM LUSITANICUM; ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL FLAGELLUM; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM; BACTERIUM ISOLATION; CARBON SOURCE; CHEMOTAXONOMY; CITRIC ACID CYCLE; CLASSIFICATION; COMPARATIVE STUDY; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DINOFLAGELLATE; DNA CONTENT; GENETIC CODE; INCUBATION TEMPERATURE; INFORMATION PROCESSING; LABRENZIA AGGREGATA; LABRENZIA ALBA; LABRENZIA ALEXANDRII; LABRENZIA MARINA; MARINE BACTERIUM; MICROBIAL MORPHOLOGY; NEW COMBINATION (TAXONOMY); NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PANNONIBACTER; PH; PHOTOSYNTHESIS; PRIORITY JOURNAL; PROTEOBACTERIA; RNA SEQUENCE; ROSEIBIUM; ROSEIBIUM DENHAMENSE; ROSEIBIUM HAMILIENSE; STAPPIA; STAPPIA STELLULATA;

AEROBIOSIS; ALPHAPROTEOBACTERIA; ANIMALS; BACTERIAL PROTEINS; BACTERIOCHLOROPHYLL A; BASE COMPOSITION; BIOTIN; CARBON; CAROTENOIDS; DINOFLAGELLIDA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; HYDROGEN-ION CONCENTRATION; INTERCELLULAR SIGNALING PEPTIDES AND PROTEINS; LIGHT-HARVESTING PROTEIN COMPLEXES; MOLECULAR SEQUENCE DATA; MOVEMENT; NITROGEN; PHOSPHOLIPIDS; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; PHYLOGENY; PIGMENTS, BIOLOGICAL; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; TELLURIUM; TEMPERATURE; THIAMINE;

AGGREGATA; ALEXANDRIUM LUSITANICUM; DINOPHYCEAE; PANNONIBACTER; PROTEOBACTERIA; ROSEIBIUM; ROSEIBIUM DENHAMENSE; ROSEIBIUM HAMELINENSE; STAPPIA; STAPPIA AGGREGATA; STAPPIA ALBA; STAPPIA MARINA; STAPPIA STELLULATA;

EID: 34249070059     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64821-0     Document Type: Article

References (49)

1. Allgaier, M., Uphoff, H., Felske, A. & Wagner-Döbler, I. (2003). Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats. Appl Environ Microbiol 69, 5051-5059.
2. Biebl, H. & Wagner-Döbler, I. (2006). Growth and bacteriochlorophyll a formation in taxonomically diverse aerobic anoxygenic phototrophic bacteria in chemostat culture: Influence of light regimen and starvation. Process Biochem 41, 2153-2159.
3. Biebl, H., Allgaier, M., Tindall, B. J., Koblizek, M, Lünsdorf, H, Pukall, R. & Wagner-Döbler, I. (2005). Dinoroseobacter shibae gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflageflates. Int J Syst Evol Microbiol 55, 1089-1096.
4. Biebl, H., Tindall, B. J., Pukall, R., Lünsdorf, H., Allgaier, M. & Wagner-Döbler, I. (2006). Hoeflea phototrophica sp. nov., a new marine aerobic Alphaproteobacterium that forms bacteriochlorophyll a. Int J Syst Evol Microbiol 56, 821-826.
5. Borsodi, A. K, Micsinai, A., Kovács, G., Tóth, E., Schumann, P., Kovács, A. L., Böddi, B. & Márialigeti, K (2003). Pannonibacter phragmitetus gen. nov., sp. nov., a novel alkalitolerant bacterium isolated from decomposing reed rhizomes in a Hungarian soda lake. Int J Syst Evol Microbiol 53, 555-561.
6. Carballeira, N. M., Sostre, A., Stefanov, K, Popov, S., Kujumgiev, A., Dimitrova-Konaklieva, S., Tosteson, C. G. & Tosteson, T. R. (1997). The fatty acid composition of a Vibrio alginolyticus associated with the alga Cladophora coelothrix. Identification of the novel 9-methyl-10-hexadecenoic acid. Lipids 32, 1271-1275.
7. Carballeira, N. M., Emiliano, A., Sostre, A., Restituyo, J. A., González, I. M., Colón, G. M., Tosteson, C. G. & Tosteson, T. R. (1998). Fatty acid composition of bacteria associated with the toxic dinoflagellate Ostreopsis lenticularis and with Caribbean Palythoa species. Lipids 33, 627-632.
8. Clayton, R. K. (1963). Absorption spectra of photosynthetic bacteria and their chlorophylls. In Bacterial Photosynthesis, pp. 495-500. Edited by H. Gest, A. San Pietro & L. P. Vernon. Yellow Springs: Antioch Press.
9. Couderc, F. (1995). Gas chromatography/tandem mass spectrometry as an analytical tool for the identification of fatty acids. Lipids 30, 691-699.
10. Donachie, S. P., Bowman, J. P. & Alam, M. (2006). Nesiotobacter exalbescens gen. nov., sp. nov., a moderately thermophilic Alpha-proteobacterium from an Hawaiian hypersaline lake. Int J Syst Evol Microbiol 56, 563-567.
11. Felsenstein, J. (1993). PHYLIP (phylogenetic inference package) version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
12. Francke, W., Schulz, S, Sinnwell, V, König, W. A. & Roisin, Y. (1989). Epoxytetrahydroedulan, a new terpenoid from the hairpencils of Euploea (Lep. Danainae) butterflies. Liebigs Ann Chem 12, 1195-1201.
13. Fukunaga, Y., Kurahashi, M., Tanaka, K., Yanagi, K., Yokota, A. & Harayama, S. (2006). Pseudovibrio ascidiaceicola sp. nov., isolated from ascidians (sea squirts). Int J Syst Evol Microbiol 56, 343-347.
14. Gerhardt P., Murray, R. G. E., Costilow, R. N., Nester, E. W., Wood, W. A., Krieg, N. R. & Phillips, G. B. (1981). Manual of Methods for General Bacteriology. Washington, DC: American Society for Microbiology.
15. Golyshina, O. V., Pivovarova, T. A., Karavaiko, G. I., Kondrateva, T. F., Moore, E. R. B., Abraham, W.-R., Lünsdorf, H., Timmis, K N., Yakimov, M. M. & Golishin, P. N. (2000). Ferroplasma acidiphilum gen. nov., sp. nov., an acidophilic, autotrophic, ferrous-iron-oxidizing, cell-wall-lacking, mesophilic member of Ferroplasmaceae fam. nov., comprising a distinct lineage of the Archaea. Int J Syst Evol Microbiol 50, 997-1006.
16. Hall, T. A. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
17. Harashima, K., Shiba, T. & Murata, N. (1989). Aerobic Photosynthetic Bacteria. Japan Scientific Societies Press. Berlin: Springer.
18. Harvey, D. J. (1982). Picolinyl esters as derivatives for the structural determination of long chain branched and unsaturated fatty acids. Biomed Mass Spectrom 9, 33-38.
19. Kerger, B. D, Nichols, P. D., Antworth, C. P., Sand, W., Bock E., Cox, J. C., Langworthy, T. A. & White, D. C. (1986). Signature fatty acids in the polar lipids of acid-producing Thiobacillus spp. methoxy, cyclopropyl, alpha-hydroxy-cyclopropyl and branched and normal monoenoic fatty acids. FEMS Microbiol Ecol 38, 67-77.
20. Kim, B.-C., Park, J. R., Bae, J.-W., Rhea, S.-K., Kim, K. H., Oh, J.-W. & Park, Y.-H. (2006). Stappia marina sp. nov., a marine bacterium isolated from the Yellow Sea. Int J Syst Evol Microbiol 56, 75-79.
21. King, G. M. (2003). Molecular and culture-based analyses of aerobic carbon monoxide oxidizer diversity. Appl Environ Microbiol 69, 7257-7265.
22. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Schumann, P. & Hirsch, P. (1999). Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll a production from hypersaline Ekho Lake. Int J Syst Bacteriol 49, 137-147.
23. Maidak, B. L., Cole, J. R., Lilburn, T. G., Parker, C. T., Jr, Saxman, P. R., Farris, R. J., Garrity, G. M., Olsen, G. J., Schmidt T. M. & Tiedje, J. M. (2001). The RDP-II (Ribosomal Database Project). Nucleic Acids Res 29, 173-174.
24. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
25. Murray, R. G. E., Brenner, D. J., Colwell, R. R., De Vos, P., Goodfellow, M., Grimont, P. A. D., Pfennig, N., Stackebrandt, E. & Zavarzin, G. A. (1990). Report of the ad-hoc-committee on approaches to taxonomy within the Proteobacteria. Int J Syst Bacteriol 40, 213-215.
26. Nishimura, Y., Muroga, Y., Saitoh, S., Shiba, T., Takamiya, K & Shiol, Y. (1994). DNA relatedness and chemotaxonomical feature of aerobic bacteriochlorophyll-containing bacteria isolated from the coast of Australia. J Gen Appl Microbiol 40, 287-296.
27. Pfennig, N. & Trüper, H. G. (1992). The family Chromatiaceae. In The Prokaryotes, 2nd edn, pp. 3200-3221. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. Berlin: Springer.
28. Pradella, S., Allgaier, M., Hoch, C., Päuker, O., Stackebrandt, E. & Wagner-Döbler, I. (2004). Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine Alphaproteobaaeria. Appl Environ Microbiol 70, 3360-3369.
29. Pujalte, M. J., Macian, M. C., Arahal, D. R. & Garay, E. (2005). Stappia alba sp. nov., isolated from Mediterranean oysters. Syst Appl Microbiol 28, 672-678.
30. Quan, Z.-X, Bae, H.-S., Baek J.-H., Chen, W.-F., Im, W.-T. & Lee, S.-T. (2005). Rhizobium daejeonense sp. nov., isolated from a cyanide treatment bioreactor. Int J Syst Evol Microbiol 55, 2543-2549.
31. Rathgeber, Ch., Beatty, J. T. & Yurkov, V. V. (2004). Aerobic phototrophic bacteria: New evidence for the diversity, ecological importance and applied potential of this previously overlooked group. Photosynth Res 81, 113-128.
32. Rontani, J.-F., Christodoulou, S. & Koblizek, M. (2005). GC-MS structural characterization of fatty acids from marine aerobic anoxygenic phototrophic bacteria. Lipids 40, 97-108.
33. Rüger, H. J. & Höfle, M. G. (1992). Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev. Int J Syst Bacteriol 42, 133-143.
34. Sato, K. (1978). Bacteriochlorophyll formation by facultative methylotrophs, Protaminobacter ruber and Pseudomonas AM 1. FEBS Lett 85, 207-210.
35. Scribe, P., Guezennec, J., Dagaut, J., Pepe, C. & Saliot A. (1988). Identification of the position and the stereochemistry of the double bond in monounsaturated fatty acid methyl esters by gas chromatography/ mass spectrometry of dimethyl disulfide derivatives. Anal Chem 60, 928-931.
36. Shiba, T., Shioi, Y., Takamiya, I. K, Sutton, D. C. & Wilkinson, C. R. (1991). Distribution and physiology of aerobic bacteria containing bacteriochlorophyll a on the east and west coasts of Australia. Appl Environ Microbiol 57, 295-300.
37. Shieh, W. Y., Lin, Y. T. & Jean, W. D. (2004). Pseudovibrio denitrificans gen. nov., sp. nov., a marine, facultatively anaerobic, fermentative bacterium capable of denitrification. Int J Syst Evol Microbiol 54, 2307-2312.
38. Stapp, C. & Knösel, D. (1954). Zur Genetik sternbildender Bakterien. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt 2 108, 243-259.
39. Suzuki, T., Muroga, Y., Takahama, M. & Nishimura, Y. (2000). Roseibium denhamense gen. nov., sp. nov. and Roseibium hamelinense sp. nov., aerobic bacteriochlorophyll-containing bacteria isolated from the east and west coasts of Australia. Int J Syst Evol Microbiol 50, 2151-2156.
40. Tighe, S. W., de Lajudie, P., Dipietro, K, Lindström, K, Nick G. & Jarvis, B. D. W. (2000). Analysis of cellular fatty acids and phenotypic relationships of Agrobacterium, Bradyrhizobium, Mesorhizobium and Sinorhizobium species using the Sherlock Microbial Identification System. Int J Syst Evol Microbiol 50, 787-801.
41. Tindall, B. J. (1990). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
42. Uchino, Y., Hirata, A., Yakota, A. & Sugiyama, J. (1998). Reclassification of marine Agrobacterium species: Proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliensis gen. nov., sp. nov., nom. rev. J Gen Appl Microbiol 44, 201-210.
43. Wagner-Dobler, I. & Biebl, H. (2006). Environmental biology of the marine Roseobacter lineage. Annu Rev Microbiol 60, 255-280.
44. Wayne, L G., Brenner, D. J., Colwell, R. R., Grimont P. A. D, Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
45. Yakimov, M. M., Golyshin, P. N., Lang, S., Moore, E. R. B., Abraham, W.-R., Lünsdorf, H. & Timmis, K. N. (1998). Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactant-producing marine bacterium. Int J Syst Bacteriol 48, 339-348.
46. Yurkov, V. V. & Beatty, J. T. (1998). Aerobic anoxygenic phototrophic bacteria. Microbiol Mol Biol Rev 62, 695-724.
47. Yurkov, V. V. & van Gemerden, H. (1993). Impact of light/dark regimen on growth rate, biomass formation and bacteriochlorophyll synthesis in Erythromicrobium hydrolyticum. Arch Microbiol 159, 84-89.
48. Yurkov, V. V., Krassilnikova, E. N. & Gorlenko, V. N. (1993). Effect of light and oxygen on the metabolism of the aerobic bacterium Erythromicrobium sibiricum. Microbiology (English translation of Mikrobiologiya) 62, 35-38.
49. Yurkov, V., Jappé J. & Verméglio, A. (1996). Tellurite resistance and reduction by obligately aerobic photosynthetic bacteria. Appl Environ Microbiol 62, 4195-4198.