Five ovine mitochondrial lineages identified from sheep breeds of the near east

Genetics

Volumn 175, Issue 3, 2007, Pages 1371-1379

  Meadows, Jennifer R S ^a,b   Cemal, Ibrahim ^c   Karaca, Orhan ^c   Gootwine, Elisha ^d   Kijas, James W ^a  

^a CSIRO   (Australia)

^b UNIVERSITY OF NEW ENGLAND   (Australia)

^c ADNAN MENDERES UNIVERSITY   (Turkey)

^d VOLCANI CENTER   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL EXPERIMENT; ARTICLE; BREEDING; CELL LINEAGE; CONTROLLED STUDY; DNA SEQUENCE; HAPLOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; UNINDEXED SEQUENCE;

ANIMALS; BASE SEQUENCE; BAYES THEOREM; DNA, MITOCHONDRIAL; HAPLOTYPES; ISRAEL; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POPULATION DYNAMICS; SEQUENCE ANALYSIS, DNA; SHEEP, DOMESTIC; SPECIES SPECIFICITY; TURKEY; VARIATION (GENETICS);

BOS; CAPRA HIRCUS; OVIS; OVIS AMMON; OVIS ARIES; OVIS ARIES MUSIMON; OVIS VIGNEI; SUIDAE;

EID: 34249046656     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.106.068353     Document Type: Article

References (37)

1. BANDELT, H-J., P. FORSTER and A. ROHL, 1999 Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16: 37-48.
2. BUNCH, T. D., C. WU, Y.-P. ZHANG and S. WANG, 2006 Phylogenetic analysis of Snow Sheep (Ovis nivicola) and closely related taxa. J. Hered. 97: 21-30.
3. CHEN, S-Y., Z-Y. DUAN, T. SHA, J. XIANGYU, S-F. WU et al., 2006 Origin, genetic diversity, and population structure of Chinese domestic sheep. Gene 376: 216-223.
4. EXCOFFIER, L., G. LAVAL and S. SCHNEIDER, 2005 Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50.
5. FANG, M., and L. ANDERSSON, 2006 Mitochondrial diversity in European and Chinese pigs is consistent with population expansions which occurred prior to domestication. Proc. Biol. Sci. 273: 1803-1810.
6. FU, Y.-X., 1997 Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925.
7. GUO, J., L. X. DU, Y. H. MA, W. J. GUAN, H. B. LI et al., 2005 A novel maternal lineage revealed in sheep (Ovis aries). Anim. Genet. 36: 331-336.
8. HASEGAWA, M., H. KISHINO and T. YANO, 1985 Dating of the humanape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22: 160-174.
9. HIENDLEDER, S., K. MAINZ, Y. PLANTE and H. LEWALSKI, 1998 Analysis of mitochondrial DNA indicates that domestic sheep are derived from two different ancestral maternal sources: no evidence for contributions from urial and argali sheep. J. Hered. 89: 113-120.
10. HIENDLEDER, S., B. KAUPE, R. WASSMUTH and A. JANKE, 2002 Molecular analysis of wild and domestic sheep questions current nomenclature and provides evidence for domestication from two different subspecies. Proc. Biol. Sci. 269: 893-904.
11. HO, S. Y., and G. LARSON, 2006 Molecular clocks: when times are a-changin'. Trends Genet. 22: 79-83.
12. HUELSENBECK, J. P., and F. RONQUIST, 2001 MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
13. JOSHI, M. B., P. K. ROUT, A. K. MANDAL, C. TYLER-SMITH, L. SINGH et al., 2004 Phylogeography and origin of Indian domestic goats. Mol. Biol. Evol. 21: 454-462.
14. KUMAR, S., K. TAMURA and M. NEI, 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5: 150-163.
15. LARSON, G., K. DOBNEY, U. ALBARELLA, M. FANG, E. MATISOO-SMITH et al., 2005 Worldwide phylogeography of wild boar reveals multiple centers of pig domestication. Science 307: 1618-1621.
16. LEGGE, T., 1996 The beginning of caprine domestication, pp. 238-262 in The Origins and Spread of Agriculture and Pastoralism in Eurasia, edited by D. R. Harris. Smithsonian Institution Press, New York.
17. LI, W-H., 1997 Molecular Evolution. Sinauer Associates, Sunderland, MA.
18. LUIKART, G., L. GIELLY, L. EXCOFFIER, J. D. VIGNE, J. BOUVET et al., 2001 Multiple maternal origins and weak phylogeographic structure in domestic goats. Proc. Natl. Acad. Sci. USA 98: 5927-5932.
19. MEADOWS, J. R. S., K. LI, J. KANTANEN, M. TAPIO, W. SIPOS et al., 2005 Mitochondrial sequence reveals high levels of gene flow between breeds of domestic sheep from Asia and Europe. J. Hered. 96: 494-501.
20. MILLER, S. A., D. D. DYKES and H. F. POLESKY, 1988 A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 16: 1215.
21. PARR, R. L., J. MAKI, B. REGULY, G. D. DAKUBO, A. AGUIRRE et al., 2006 The pseudo-mitochondrial genome influences mistakes in heteroplasmy interpretation. BMC Genomics 7: 185.
22. PEDROSA, S., M. UZUN, J. J. ARRANZ, B. GUTIERREZZ-GIL, F. SAN PRIMITIVO et al., 2005 Evidence of three maternal lineages in near eastern sheep supporting multiple domestication events. Proc. Biol. Sci. 272: 2211-2217.
23. PEREIRA, F., S. J. M. DAVIS, L. PEREIRA, B. MCEVOY, D. G. BRADLEY et al., 2006 Genetic signatures of a Mediterranean influence in Iberian Peninsula sheep husbandry. Mol. Biol. Evol. 23: 1420-1426.
24. PESOLE, G., C. GISSI, A. DE CHIRICO and C. SACCONE, 1999 Nucleotide substitution rate of mammalian mitochondrial genomes. J. Mol. Evol. 48: 427-434.
25. POSADA, D., and K. A. CRANDALL, 1998 Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
26. ROGERS, A., 1995 Genetic evidence for a Pleistocene population explosion. Evolution 49: 608-615.
27. ROGERS, A. R., and H. HARPENDING, 1992 Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9: 552-569.
28. RONQUIST, F., and J. P. HUELSENBECK, 2003 MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
29. ROZAS, J., J. C. SANCHEZ-DELBARRIO, X. MESSEGUER and R. ROZAS, 2003 DnaSP: DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
30. RYDER, M. L., 1984 Sheep, pp. 63-84 in Evolution of Domesticated Animals, edited by I. L. Mason. Longman Group, London/New York.
31. SARDINA, M. T., M. BALLESTER, J. MARMI, R. FINOCCHIARO, J. B. VAN KAAM et al., 2006 Phylogenetic analysis of Sicilian goats reveals a new mtDNA lineage. Anim. Genet. 37: 376-378.
32. SCHERF, B. D. (Editor), 2000 World Watch List for Domestic Animal Diversity, Ed. 3. Food and Agriculture Organization of the United Nations, Rome.
33. SCHNEIDER, S., and L. EXCOFFIER, 1999 Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152: 1079-1089.
34. SWOFFORD, D. L., 2003 PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. Sinauer Associates, Sunderland, MA.
35. TAMURA, K., and M. NEI, 1993 Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10: 512-526.
36. TAPIO, M., N. MARZANOV, M. OZEROV, M. CINKULOV, G. GONZARENKO et al., 2006 Sheep mitochondrial DNA variation in European, Caucasian, and Central Asian areas. Mol. Biol. Evol. 23: 1776-1783.
37. WOOD, N. J., and S. H. Phua, 1996 Variation in the control region sequence of the sheep mitochondrial genome. Anim. Genet. 27: 25-33.