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Volumn 271, Issue 2, 2007, Pages 222-229

Sigma 28 promoter prediction in members of the Gammaproteobacteria

Author keywords

Gammaproteobacteria; Promoter prediction; Sigma 28

Indexed keywords

SIGMA FACTOR;

EID: 34249034599     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2007.00720.x     Document Type: Article
Times cited : (9)

References (21)
  • 1
    • 3543068251 scopus 로고    scopus 로고
    • Regulog analysis detection of conserved regulatory networks across bacteria: Application to Staphylococcus aureus
    • Alkema WBL, Lenhard B Wasserman WW (2007) Regulog analysis detection of conserved regulatory networks across bacteria: application to Staphylococcus aureus. Genome Res 14 : 1362 1373.
    • (2007) Genome Res , vol.14 , pp. 1362-1373
    • Alkema, W.B.L.1    Lenhard, B.2    Wasserman, W.W.3
  • 2
    • 0025278259 scopus 로고
    • Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences
    • Bucher P (1990) Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences. J Mol Biol 212 : 563 578.
    • (1990) J Mol Biol , vol.212 , pp. 563-578
    • Bucher, P.1
  • 3
    • 0034444676 scopus 로고    scopus 로고
    • Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli
    • Chilcott GS Hughes KT (2000) Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli. Microbiol Mol Biol Rev 64 : 694 708.
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 694-708
    • Chilcott, G.S.1    Hughes, K.T.2
  • 4
    • 0028904426 scopus 로고
    • Promoter architecture in the flagellar regulon of Bacillus subtilis: High-level expression of flagellin by the σd RNA polymerase requires an upstream promoter element
    • Fredrick K, Caramori T, Chen Y-F, Galizzi A Helmann JD (1994) Promoter architecture in the flagellar regulon of Bacillus subtilis: high-level expression of flagellin by the σD RNA polymerase requires an upstream promoter element. Proc Natl Acad Sci USA 92 : 2582 2586.
    • (1994) Proc Natl Acad Sci USA , vol.92 , pp. 2582-2586
    • Fredrick, K.1    Caramori, T.2    Chen, Y.-F.3    Galizzi, A.4    Helmann, J.D.5
  • 6
    • 0023409126 scopus 로고
    • DNA sequence analysis suggests that expression of flagellar and chemotaxis genes in Escherichia coli and Salmonella typhimurium is controlled by an alternative σ factor
    • Helmann JD Chamberlin MJ (1987) DNA sequence analysis suggests that expression of flagellar and chemotaxis genes in Escherichia coli and Salmonella typhimurium is controlled by an alternative σ factor. Proc Natl Acad Sci USA 84 : 6422 6424.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 6422-6424
    • Helmann, J.D.1    Chamberlin, M.J.2
  • 7
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz GZ Stormo GD (1999) Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics 15 : 563 577.
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 8
    • 0027965333 scopus 로고
    • Sequence analysis of the Vibrio cholerae acfD gene reveals the presence of an overlapping reading frame, orfZ, which encodes a protein that shares sequence similarity to the FliA and FliC products of Salmonella
    • Hughes KJ, Everiss KD, Kovach ME Peterson KM (1994) Sequence analysis of the Vibrio cholerae acfD gene reveals the presence of an overlapping reading frame, orfZ, which encodes a protein that shares sequence similarity to the FliA and FliC products of Salmonella. Gene 146 : 79 82.
    • (1994) Gene , vol.146 , pp. 79-82
    • Hughes, K.J.1    Everiss, K.D.2    Kovach, M.E.3    Peterson, K.M.4
  • 9
    • 0033149857 scopus 로고    scopus 로고
    • Reevaluation of the promoter structure of the class 3 flagellar operons of Escherichia coli and Salmonella
    • Ide N, Ikebe T Kutsukake K (1999) Reevaluation of the promoter structure of the class 3 flagellar operons of Escherichia coli and Salmonella. Genes Genet Syst 74 : 113 116.
    • (1999) Genes Genet Syst , vol.74 , pp. 113-116
    • Ide, N.1    Ikebe, T.2    Kutsukake, K.3
  • 10
    • 0031951605 scopus 로고    scopus 로고
    • Differential regulation of multiple flagellins in Vibrio cholerae
    • Klose KE Mekalanos JJ (1998) Differential regulation of multiple flagellins in Vibrio cholerae. J Bacteriol 180 : 303 316.
    • (1998) J Bacteriol , vol.180 , pp. 303-316
    • Klose, K.E.1    Mekalanos, J.J.2
  • 12
    • 0042170415 scopus 로고    scopus 로고
    • Flagellin gene fliC of Xanthomonas campestris is upregulated by transcription factor Clp
    • Lee M-C, Weng S-F Tseng Y-H (2003) Flagellin gene fliC of Xanthomonas campestris is upregulated by transcription factor Clp. Biochem Biophys Res Com 307 : 647 652.
    • (2003) Biochem Biophys Res Com , vol.307 , pp. 647-652
    • Lee, M.-C.1    Weng, S.-F.2    Tseng, Y.-H.3
  • 13
    • 0344237358 scopus 로고    scopus 로고
    • Computational identification of the SpoOA-phosphate regulon that is essential for the cellular differentiation and development in Gram-positive spore-forming bacteria
    • Liu J, Tan K Stormo GD (2003) Computational identification of the SpoOA-phosphate regulon that is essential for the cellular differentiation and development in Gram-positive spore-forming bacteria. Nucleic Acids Res 31 : 6891 6903.
    • (2003) Nucleic Acids Res , vol.31 , pp. 6891-6903
    • Liu, J.1    Tan, K.2    Stormo, G.D.3
  • 14
    • 4844225256 scopus 로고    scopus 로고
    • Transcription of Proteus mirabilis flaAB
    • Manos J Belas R (2004) Transcription of Proteus mirabilis flaAB. Microbiology 150 : 2857 2863.
    • (2004) Microbiology , vol.150 , pp. 2857-2863
    • Manos, J.1    Belas, R.2
  • 15
    • 0034828107 scopus 로고    scopus 로고
    • Polar flagellar motility of the Vibrionaceae
    • McCarter LL (2001) Polar flagellar motility of the Vibrionaceae. Microbiol Mol Biol Rev 65 : 445 462.
    • (2001) Microbiol Mol Biol Rev , vol.65 , pp. 445-462
    • McCarter, L.L.1
  • 16
    • 0035928603 scopus 로고    scopus 로고
    • Novel σf-dependent genes of Escherichia coli found using a specified promoter consensus
    • Park K, Choi S, Ko M Park C (2001) Novel σF-dependent genes of Escherichia coli found using a specified promoter consensus. FEMS Microbiol Lett 202 : 243 250.
    • (2001) FEMS Microbiol Lett , vol.202 , pp. 243-250
    • Park, K.1    Choi, S.2    Ko, M.3    Park, C.4
  • 17
    • 0034744733 scopus 로고    scopus 로고
    • The novel σ54- and σ28-dependent flagellar gene transcription hierarchy of Vibrio cholerae
    • Prouty MG, Correa NE Klose KE (2001) The novel σ54- and σ28-dependent flagellar gene transcription hierarchy of Vibrio cholerae. Mol Microbiol 39 : 1595 1609.
    • (2001) Mol Microbiol , vol.39 , pp. 1595-1609
    • Prouty, M.G.1    Correa, N.E.2    Klose, K.E.3
  • 18
    • 20644446065 scopus 로고    scopus 로고
    • Identification of a bacterial regulatory system for ribonucleotide reductases by phylogenetic profiling
    • Rodionov DA Gelfand MS (2005) Identification of a bacterial regulatory system for ribonucleotide reductases by phylogenetic profiling. Trends Genet 21 : 385 389.
    • (2005) Trends Genet , vol.21 , pp. 385-389
    • Rodionov, D.A.1    Gelfand, M.S.2
  • 19
    • 0034072450 scopus 로고    scopus 로고
    • DNA binding sites: Representation and discovery
    • Stormo GD (2000) DNA binding sites: representation and discovery. Bioinformatics 16 : 16 23.
    • (2000) Bioinformatics , vol.16 , pp. 16-23
    • Stormo, G.D.1
  • 20
    • 0034307951 scopus 로고    scopus 로고
    • The alternative sigma factor σ28 of the extreme thermophile Aquifex aeolicus restores motility to an Escherichia coli fliA mutant
    • Studholme DJ Buck M (2000) The alternative sigma factor σ28 of the extreme thermophile Aquifex aeolicus restores motility to an Escherichia coli fliA mutant. FEMS Microbiol Lett 191 : 103 107.
    • (2000) FEMS Microbiol Lett , vol.191 , pp. 103-107
    • Studholme, D.J.1    Buck, M.2
  • 21
    • 0142030043 scopus 로고    scopus 로고
    • Sigma 28 RNA polymerase regulates hctB, a late developmental gene in Clamydia
    • Yu HH Tan M (2003) Sigma 28 RNA polymerase regulates hctB, a late developmental gene in Clamydia. Mol Microbiol 50 : 577 584.
    • (2003) Mol Microbiol , vol.50 , pp. 577-584
    • Yu, H.H.1    Tan, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.