메뉴 건너뛰기




Volumn 155, Issue 6, 2007, Pages 333-341

Molecular characterization of the 3′-terminal region of Turnip mosaic virus isolates from eastern China

Author keywords

Phylogenetic analysis; Recombination; Turnip mosaic virus; Variability

Indexed keywords

AMINO ACID; CROP DAMAGE; CROP PRODUCTION; DICOTYLEDON; GENOME; MOLECULAR ANALYSIS; PHYLOGENETICS; VIRUS;

EID: 34248595773     PISSN: 09311785     EISSN: 14390434     Source Type: Journal    
DOI: 10.1111/j.1439-0434.2007.01236.x     Document Type: Article
Times cited : (11)

References (53)
  • 1
    • 11144240592 scopus 로고    scopus 로고
    • Identification and molecular characterization of viruses infecting cucurbits in Pakistan
    • Ali A, Natsuaki T, Okuda S 2004) Identification and molecular characterization of viruses infecting cucurbits in Pakistan. J Phytopathol 152 : 677 682.
    • (2004) J Phytopathol , vol.152 , pp. 677-682
    • Ali, A.1    Natsuaki, T.2    Okuda, S.3
  • 2
    • 0028021029 scopus 로고
    • Evidence for an internal ribosome entry site within the 5′ non-translated region of Turnip mosaic potyvirus RNA
    • Basso J, Dallaire P, Chares PJ, Devantier Y, Laliberte JF 1994) Evidence for an internal ribosome entry site within the 5′ non-translated region of Turnip mosaic potyvirus RNA. J Gen Virol 75 : 3157 3165.
    • (1994) J Gen Virol , vol.75 , pp. 3157-3165
    • Basso, J.1    Dallaire, P.2    Chares, P.J.3    Devantier, Y.4    Laliberte, J.F.5
  • 3
    • 33644976053 scopus 로고    scopus 로고
    • Brunt, A.A., Crabtree, K., Dallwitz, M.J., Gibbs, A.J., Watson, L., Zurcher, E.J. eds). onwards.
    • Brunt AA, Crabtree K, Dallwitz MJ, Gibbs AJ, Watson L, Zurcher EJ eds) Plant Viruses Online: Descriptions and Lists from the VIDE Database, 1996 onwards.
    • (1996) Plant Viruses Online: Descriptions and Lists from the VIDE Database
  • 5
    • 0036521370 scopus 로고    scopus 로고
    • Variation between Turnip mosaic virus isolates in Zhejiang Provinces, China and evidence for recombination
    • Chen J, Chen JP, Adams MJ 2002) Variation between Turnip mosaic virus isolates in Zhejiang Provinces, China and evidence for recombination. J Phytopathol 150 : 142 145.
    • (2002) J Phytopathol , vol.150 , pp. 142-145
    • Chen, J.1    Chen, J.P.2    Adams, M.J.3
  • 6
    • 0042704791 scopus 로고    scopus 로고
    • Identification of Turnip mosaic virus isolates causing yellow stripe and spot on calla lily
    • Chen CC, Chao CH, Yeh SD, Tsai HT, Chang CA 2003) Identification of Turnip mosaic virus isolates causing yellow stripe and spot on calla lily. Plant Dis 87 : 901 905.
    • (2003) Plant Dis , vol.87 , pp. 901-905
    • Chen, C.C.1    Chao, C.H.2    Yeh, S.D.3    Tsai, H.T.4    Chang, C.A.5
  • 7
    • 34248537875 scopus 로고
    • A viral disease in Chinese cabbage-''Kuting''
    • Chiu WF, Wang QK 1957) A viral disease in Chinese cabbage-''Kuting''. Acta Phytopathol Sinica 3 : 31 44.
    • (1957) Acta Phytopathol Sinica , vol.3 , pp. 31-44
    • Chiu, W.F.1    Wang, Q.K.2
  • 8
    • 0000286850 scopus 로고
    • Vol. I-IV. FL, USA, Florida Agricultural Experiment Station Monograph 16, Florida, USA.
    • Edwardson JR, Christie RG. The Potyvirus Group. Vol. I-IV. FL, USA, Florida Agricultural Experiment Station Monograph 16, 1991, Florida, USA.
    • (1991) The Potyvirus Group.
    • Edwardson, J.R.1    Christie, R.G.2
  • 10
    • 0002696765 scopus 로고
    • Turnip mosaic virus strains in cruciferous hosts in Taiwan
    • Green SK, Deng TC 1985) Turnip mosaic virus strains in cruciferous hosts in Taiwan. Plant Dis 69 : 28 31.
    • (1985) Plant Dis , vol.69 , pp. 28-31
    • Green, S.K.1    Deng, T.C.2
  • 11
    • 34248520312 scopus 로고    scopus 로고
    • AFLP markers linked to TuMV-resistance gene in Chinese cabbage (Brassica rapa subsp. pekinensis)
    • Han HP, Sun RF, Zhang SJ, Li F, Zhang SF, Niu XK 2004) AFLP markers linked to TuMV-resistance gene in Chinese cabbage (Brassica rapa subsp. pekinensis). Sci Agric Sin 37 : 539 544.
    • (2004) Sci Agric Sin , vol.37 , pp. 539-544
    • Han, H.P.1    Sun, R.F.2    Zhang, S.J.3    Li, F.4    Zhang, S.F.5    Niu, X.K.6
  • 12
    • 0036326117 scopus 로고    scopus 로고
    • Involvement of Beet western yellows virus, Cauliflower mosaic virus, andTurnip mosaic virus in internal disorders of stored white cabbage
    • Hunter PJ, Jones JE, Walsh JA 2002) Involvement of Beet western yellows virus, Cauliflower mosaic virus, andTurnip mosaic virus in internal disorders of stored white cabbage. Phytopathology 92 : 816 826.
    • (2002) Phytopathology , vol.92 , pp. 816-826
    • Hunter, P.J.1    Jones, J.E.2    Walsh, J.A.3
  • 13
    • 0030303076 scopus 로고    scopus 로고
    • Pathotypic variation in Turnip mosaic virus with special reference to European isolates
    • Jenner CE, Walsh JA 1996) Pathotypic variation in Turnip mosaic virus with special reference to European isolates. Plant Pathol 45 : 848 856.
    • (1996) Plant Pathol , vol.45 , pp. 848-856
    • Jenner, C.E.1    Walsh, J.A.2
  • 14
    • 0032982567 scopus 로고    scopus 로고
    • Serotypic variation in Turnip mosaic virus
    • Jenner CE, Keane GJ, Walsh JA 1999) Serotypic variation in Turnip mosaic virus. Plant Pathol 48 : 101 108.
    • (1999) Plant Pathol , vol.48 , pp. 101-108
    • Jenner, C.E.1    Keane, G.J.2    Walsh, J.A.3
  • 15
    • 0033804020 scopus 로고    scopus 로고
    • The cylindrical inclusion gene of Turnip mosaic virus encodes a pathogenic determinant to the brassica resistance gene TuRB01
    • Jenner CE, Sánchez F, Nettleship SB, Foster GD, Ponz F, Walsh JA 2000) The cylindrical inclusion gene of Turnip mosaic virus encodes a pathogenic determinant to the brassica resistance gene TuRB01. Mol Plant Microbe Interact 13 : 1102 1108.
    • (2000) Mol Plant Microbe Interact , vol.13 , pp. 1102-1108
    • Jenner, C.E.1    Sánchez, F.2    Nettleship, S.B.3    Foster, G.D.4    Ponz, F.5    Walsh, J.A.6
  • 16
    • 0036386368 scopus 로고    scopus 로고
    • Mutations in Turnip mosaic virus P3 and cylindrical inclusion proteins are separately required to overcome two Brassica napus resistance genes
    • Jenner CE, Tomimura K, Ohshima K, Hughes SL, Walsh JA 2002) Mutations in Turnip mosaic virus P3 and cylindrical inclusion proteins are separately required to overcome two Brassica napus resistance genes. Virology 300 : 50 59.
    • (2002) Virology , vol.300 , pp. 50-59
    • Jenner, C.E.1    Tomimura, K.2    Ohshima, K.3    Hughes, S.L.4    Walsh, J.A.5
  • 17
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M 1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16 : 111 120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 18
    • 0025151581 scopus 로고
    • Molecular cloning and nucleotide sequence of coat protein gene of turnip mosaic virus
    • Kong LJ, Fang RX, Chen ZH, Mang KQ 1990) Molecular cloning and nucleotide sequence of coat protein gene of turnip mosaic virus. Nucleic Acids Res 18 : 5555.
    • (1990) Nucleic Acids Res , vol.18 , pp. 5555
    • Kong, L.J.1    Fang, R.X.2    Chen, Z.H.3    Mang, K.Q.4
  • 19
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K, Nei M 2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5 : 150 163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 20
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and non-synonymous substitution
    • Li WH 1993) Unbiased estimation of the rates of synonymous and non-synonymous substitution. J Mol Evol 36 : 96 99.
    • (1993) J Mol Evol , vol.36 , pp. 96-99
    • Li, W.H.1
  • 23
    • 34248566213 scopus 로고
    • A study of TuMV strain differentiation of cruciferous vegetables from ten provinces in China - Selection of new identification host and strains portion
    • Liu XP, Lu WC, Li JL, Liu YK 1989) A study of TuMV strain differentiation of cruciferous vegetables from ten provinces in China - selection of new identification host and strains portion. Chinese Sci Bull 34 : 1660 1664.
    • (1989) Chinese Sci Bull , vol.34 , pp. 1660-1664
    • Liu, X.P.1    Lu, W.C.2    Li, J.L.3    Liu, Y.K.4
  • 24
    • 34248511449 scopus 로고    scopus 로고
    • Molecular characterization and coat protein gene expression of a Turnip Mosaic virus isolate from radish in Weifang
    • Liu JL, Yu XQ, Tian YP, Du J, Zhu XP, Li XD, Yan DY 2006) Molecular characterization and coat protein gene expression of a Turnip Mosaic virus isolate from radish in Weifang. Acta Horticulturae Sinica 33 : 84 88.
    • (2006) Acta Horticulturae Sinica , vol.33 , pp. 84-88
    • Liu, J.L.1    Yu, X.Q.2    Tian, Y.P.3    Du, J.4    Zhu, X.P.5    Li, X.D.6    Yan, D.Y.7
  • 25
    • 14744289001 scopus 로고    scopus 로고
    • Genetic diversity of a natural population of Cucurbit yellow stunting disorder virus
    • Marco CF, Aranda MA 2005) Genetic diversity of a natural population of Cucurbit yellow stunting disorder virus. J Gen Virol 86 : 815 822.
    • (2005) J Gen Virol , vol.86 , pp. 815-822
    • Marco, C.F.1    Aranda, M.A.2
  • 26
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignments
    • Martin DP, Posada D, William C 2005) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21 : 260 262.
    • (2005) Bioinformatics , vol.21 , pp. 260-262
    • Martin, D.P.1    Posada, D.2    William, C.3
  • 28
    • 0036272754 scopus 로고    scopus 로고
    • Molecular evolution of Turnip mosaic virus: Evidence of host adaptation, genetic recombination and geographical spread
    • Ohshima K, Yamaguchi Y, Hirota R et al. (2002) Molecular evolution of Turnip mosaic virus: evidence of host adaptation, genetic recombination and geographical spread. J Gen Virol 83 : 1511 1521.
    • (2002) J Gen Virol , vol.83 , pp. 1511-1521
    • Ohshima, K.1    Yamaguchi, Y.2    Hirota, R.3
  • 29
    • 1642297402 scopus 로고    scopus 로고
    • In vitro recombinants of two nearly identical potyviral isolates express novel virulence and symptom phenotypes in plants
    • Paalme V, Gammelgård E, Järvekülg L, Valkonen JPT 2004) In vitro recombinants of two nearly identical potyviral isolates express novel virulence and symptom phenotypes in plants. J Gen Virol 85 : 739 747.
    • (2004) J Gen Virol , vol.85 , pp. 739-747
    • Paalme, V.1    Gammelgård, E.2    Järvekülg, L.3    Valkonen, J.P.T.4
  • 30
    • 0027533924 scopus 로고
    • Evolution of the Zfx and Zfy, genes: Rates and interdependence between the genes
    • Pamilo P, Bianchi NO 1993) Evolution of the Zfx and Zfy, genes: rates and interdependence between the genes. Mol Biol Evol 10 : 271 281.
    • (1993) Mol Biol Evol , vol.10 , pp. 271-281
    • Pamilo, P.1    Bianchi, N.O.2
  • 31
    • 0029792528 scopus 로고    scopus 로고
    • Classification of turnip mosaic virus isolates according to the 3′-untranslated region
    • Petrzik K, Lehmann P 1996) Classification of turnip mosaic virus isolates according to the 3′-untranslated region. Acta Virol 40 : 151 155.
    • (1996) Acta Virol , vol.40 , pp. 151-155
    • Petrzik, K.1    Lehmann, P.2
  • 32
    • 0026573174 scopus 로고
    • Highlights and prospects of potyvirus molecular biology
    • Riechmann JL, Lan S, García JA 1992) Highlights and prospects of potyvirus molecular biology. J Gen Virol 73 : 1 16.
    • (1992) J Gen Virol , vol.73 , pp. 1-16
    • Riechmann, J.L.1    Lan, S.2    García, J.A.3
  • 33
    • 84897584657 scopus 로고    scopus 로고
    • First report of Turnip mosaic virus in rhubarb in Alaska
    • Robertson NL, Ianson DC 2005) First report of Turnip mosaic virus in rhubarb in Alaska. Plant Dis 89 : 430.
    • (2005) Plant Dis , vol.89 , pp. 430
    • Robertson, N.L.1    Ianson, D.C.2
  • 34
    • 0038819643 scopus 로고    scopus 로고
    • Strains of Turnip mosaic potyvirus as defined by the molecular analysis of the coat protein gene of the virus
    • Sánchez F, Wang X, Jenner CE, Walsh JA, Ponz F 2003) Strains of Turnip mosaic potyvirus as defined by the molecular analysis of the coat protein gene of the virus. Virus Res 94 : 33 43.
    • (2003) Virus Res , vol.94 , pp. 33-43
    • Sánchez, F.1    Wang, X.2    Jenner, C.E.3    Walsh, J.A.4    Ponz, F.5
  • 36
    • 0000753953 scopus 로고
    • The biology, epidemiology and control of Turnip mosaic virus
    • In: Janick, J. (. ed. New York, NY, Wiley, pp.
    • Shattuck VI. The biology, epidemiology and control of Turnip mosaic virus. In : Janick J (ed. Plant Breeding Reviews 14. New York, NY, Wiley, 1992, pp. 199 238.
    • (1992) Plant Breeding Reviews 14. , pp. 199-238
    • Shattuck, V.I.1
  • 37
    • 34248555775 scopus 로고    scopus 로고
    • Preparation of monoclonal antibodies to Turnip mosaic virus and its application for virus detection
    • Shi ML, Wu JX, Guo W, Zhou XP 2004) Preparation of monoclonal antibodies to Turnip mosaic virus and its application for virus detection. Acta Microbiol Sin 44 : 185 188.
    • (2004) Acta Microbiol Sin , vol.44 , pp. 185-188
    • Shi, M.L.1    Wu, J.X.2    Guo, W.3    Zhou, X.P.4
  • 38
    • 0001416644 scopus 로고    scopus 로고
    • Nucleotide sequence and genome organization of a Canadian isolate of the common strain of potato virus Y (PVY°)
    • Singh M, Singh RP 1996) Nucleotide sequence and genome organization of a Canadian isolate of the common strain of potato virus Y (PVY°). Can J Plant Pathol 18 : 209 214.
    • (1996) Can J Plant Pathol , vol.18 , pp. 209-214
    • Singh, M.1    Singh, R.P.2
  • 39
    • 34248527346 scopus 로고    scopus 로고
    • Cloning and sequence analysis of coat protein genes of Turnip mosaic virus isolates obtained from Shandong
    • Song YZ, Li LL, Zhu CX, Wen FJ, Wen FK 2005) Cloning and sequence analysis of coat protein genes of Turnip mosaic virus isolates obtained from Shandong. Sci Agric Sin 38 : 504 510.
    • (2005) Sci Agric Sin , vol.38 , pp. 504-510
    • Song, Y.Z.1    Li, L.L.2    Zhu, C.X.3    Wen, F.J.4    Wen, F.K.5
  • 41
    • 4544310024 scopus 로고    scopus 로고
    • Inter- and intra-lineage recombinants are common in natural populations of Turnip mosaic virus
    • Tan Z, Wada Y, Chen J, Ohshima K 2004) Inter- and intra-lineage recombinants are common in natural populations of Turnip mosaic virus. J Gen Virol 85 : 2683 2696.
    • (2004) J Gen Virol , vol.85 , pp. 2683-2696
    • Tan, Z.1    Wada, Y.2    Chen, J.3    Ohshima, K.4
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ 1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res, 22 : 4673 4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 0042991439 scopus 로고    scopus 로고
    • The phylogeny of Turnip mosaic virus: Comparisons of 38 genomic sequences reveal a Eurasian origin and a recent 'emergence' in east Asia
    • Tomimura K, Gibbs AJ, Jenner CE, Walsh JA, Ohshima K 2003) The phylogeny of Turnip mosaic virus: comparisons of 38 genomic sequences reveal a Eurasian origin and a recent 'emergence' in east Asia. Mol Ecol 12 : 2099 2111.
    • (2003) Mol Ecol , vol.12 , pp. 2099-2111
    • Tomimura, K.1    Gibbs, A.J.2    Jenner, C.E.3    Walsh, J.A.4    Ohshima, K.5
  • 44
    • 9644259085 scopus 로고    scopus 로고
    • Comparisons of the genetic structure of populations of Turnip mosaic virus in west and east Euroasia
    • Tomimura K, Špak J, Katis N, Jenner CE, Walsh JA, Gibbs AJ, Ohshima K 2004) Comparisons of the genetic structure of populations of Turnip mosaic virus in west and east Euroasia. Virology 330 : 408 423.
    • (2004) Virology , vol.330 , pp. 408-423
    • Tomimura, K.1    Špak, J.2    Katis, N.3    Jenner, C.E.4    Walsh, J.A.5    Gibbs, A.J.6    Ohshima, K.7
  • 45
    • 0023496733 scopus 로고
    • Epidemiology and control of virus diseases of vegetables
    • Tomlinson JA, Ward CM 1987) Epidemiology and control of virus diseases of vegetables. Ann Appl Biol 110 : 661 681.
    • (1987) Ann Appl Biol , vol.110 , pp. 661-681
    • Tomlinson, J.A.1    Ward, C.M.2
  • 46
    • 0041467319 scopus 로고    scopus 로고
    • Turnip mosaic virus and the quest for durable resistance
    • Walsh JA, Jenner CE 2002) Turnip mosaic virus and the quest for durable resistance. Mol Plant Pathol 3 : 289 300.
    • (2002) Mol Plant Pathol , vol.3 , pp. 289-300
    • Walsh, J.A.1    Jenner, C.E.2
  • 47
    • 34248555776 scopus 로고
    • Studies on resistance resources of radish to Turnip mosaic virus
    • Wang LZ, Liu WD, Li HJ 1988) Studies on resistance resources of radish to Turnip mosaic virus. J Nanjing Agric Univ 11 : 32 38.
    • (1988) J Nanjing Agric Univ , vol.11 , pp. 32-38
    • Wang, L.Z.1    Liu, W.D.2    Li, H.J.3
  • 48
    • 0031892518 scopus 로고    scopus 로고
    • Phylogenetic profiles: A graphical method for detecting genetic recombinations in homologous sequences
    • Weiller GF 1998) Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences. Mol Biol Evol 15 : 326 335.
    • (1998) Mol Biol Evol , vol.15 , pp. 326-335
    • Weiller, G.F.1
  • 50
    • 34248511450 scopus 로고
    • Sequence analysis and expression in E. coli of Turnip mosaic virus coat protein gene
    • Xu P, Xu JP, Xue ZY, Chen JS, Zhang YZ, Li DB 1994) Sequence analysis and expression in E. coli of Turnip mosaic virus coat protein gene. Chinese J Virol 10 : 173 177.
    • (1994) Chinese J Virol , vol.10 , pp. 173-177
    • Xu, P.1    Xu, J.P.2    Xue, Z.Y.3    Chen, J.S.4    Zhang, Y.Z.5    Li, D.B.6
  • 51
    • 34248516924 scopus 로고    scopus 로고
    • Resistance of hybrid of Chinese kale and flowering Chinese cabbage to TuMV
    • Zheng YS, Fang MR, Zhang SG 2003) Resistance of hybrid of Chinese kale and flowering Chinese cabbage to TuMV. China Vegetables 5 : 18 20.
    • (2003) China Vegetables , vol.5 , pp. 18-20
    • Zheng, Y.S.1    Fang, M.R.2    Zhang, S.G.3
  • 52
    • 34248535899 scopus 로고
    • The detection of virus in truck crops and other plants in the suburbs of Shanghai with specific antiserum against Turnip Mosaic Virus
    • Zhu PK, Lu MK, Wang MQ et al. (1984) The detection of virus in truck crops and other plants in the suburbs of Shanghai with specific antiserum against Turnip Mosaic Virus. Acta Phytopathol Sinica 14 : 101 106.
    • (1984) Acta Phytopathol Sinica , vol.14 , pp. 101-106
    • Zhu, P.K.1    Lu, M.K.2    Wang, M.Q.3
  • 53
    • 34248520311 scopus 로고    scopus 로고
    • Quick detection of TuMV in crucifer vegetable crops using RT-PCR
    • Zhuang M, Wang XW, Zheng WG 2002) Quick detection of TuMV in crucifer vegetable crops using RT-PCR. China Vegetables 5 : 10 11.
    • (2002) China Vegetables , vol.5 , pp. 10-11
    • Zhuang, M.1    Wang, X.W.2    Zheng, W.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.