-
1
-
-
0037079023
-
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
-
Ibarra, R. U., Edwards, J. S., and Palsson, B. O. (2002) Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth, Nature 420, 186-189.
-
(2002)
Nature
, vol.420
, pp. 186-189
-
-
Ibarra, R.U.1
Edwards, J.S.2
Palsson, B.O.3
-
2
-
-
10944220879
-
High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12
-
Honisch, C., Raghunathan, A., Cantor, C. R., Palsson, B. O., and van den Boom, D. (2004) High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12, Genome Res. 14, 2495-2502.
-
(2004)
Genome Res
, vol.14
, pp. 2495-2502
-
-
Honisch, C.1
Raghunathan, A.2
Cantor, C.R.3
Palsson, B.O.4
van den Boom, D.5
-
3
-
-
33751544539
-
Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale
-
Herring, C. D., Raghunathan, A., Honisch, C., Patel, T., Applebee, M. K., Joyce, A. R., Albert, T. J., Blattner, F. R., van den Boom, D., Cantor, C. R., and Palsson, B. O. (2006) Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale, Nat. Genet. 12, 1406-1412.
-
(2006)
Nat. Genet
, vol.12
, pp. 1406-1412
-
-
Herring, C.D.1
Raghunathan, A.2
Honisch, C.3
Patel, T.4
Applebee, M.K.5
Joyce, A.R.6
Albert, T.J.7
Blattner, F.R.8
van den Boom, D.9
Cantor, C.R.10
Palsson, B.O.11
-
4
-
-
0014802916
-
Glycerol kinase, the pacemaker for the dissimilation of glycerol in Escherichia coli
-
Zwaig, N., Kistler, W. S., and Lin, E. C. C. (1970) Glycerol kinase, the pacemaker for the dissimilation of glycerol in Escherichia coli, J. Bacteriol. 102, 753-759.
-
(1970)
J. Bacteriol
, vol.102
, pp. 753-759
-
-
Zwaig, N.1
Kistler, W.S.2
Lin, E.C.C.3
-
5
-
-
0011377510
-
Utilization of L-α-glycerophosphate by Escherichia coli without hydrolysis
-
Lin, E. C. C., Koch, J. P., Chused, T. M., and Jorgensen, S. E. (1962) Utilization of L-α-glycerophosphate by Escherichia coli without hydrolysis, Proc. Nat. Acad. Sci. U.S.A. 48, 2145-2150.
-
(1962)
Proc. Nat. Acad. Sci. U.S.A
, vol.48
, pp. 2145-2150
-
-
Lin, E.C.C.1
Koch, J.P.2
Chused, T.M.3
Jorgensen, S.E.4
-
6
-
-
0018070736
-
Subunit dissociation in the allosteric regulation of glycerol kinase from Escherichia coli. 1. Kinetic evidence
-
de Riel, J. K., and Paulus, H. (1978a) Subunit dissociation in the allosteric regulation of glycerol kinase from Escherichia coli. 1. Kinetic evidence, Biochemistry 17, 5134-5140.
-
(1978)
Biochemistry
, vol.17
, pp. 5134-5140
-
-
de Riel, J.K.1
Paulus, H.2
-
7
-
-
0018069679
-
Subunit dissociation in the allosteric regulation of glycerol kinase from Escherichia coli. 2. Physical evidence
-
de Riel, J. K., and Paulus, H. (1978b) Subunit dissociation in the allosteric regulation of glycerol kinase from Escherichia coli. 2. Physical evidence, Biochemistry 17, 5141-5145.
-
(1978)
Biochemistry
, vol.17
, pp. 5141-5145
-
-
de Riel, J.K.1
Paulus, H.2
-
8
-
-
0018141201
-
Subunit dissociation in the allosteric regulation of glycerol kinase from Escherichia coli. 3. Role in desensitization
-
de Riel, J. K., and Paulus, H. (1978c) Subunit dissociation in the allosteric regulation of glycerol kinase from Escherichia coli. 3. Role in desensitization, Biochemistry 17, 5146-5150.
-
(1978)
Biochemistry
, vol.17
, pp. 5146-5150
-
-
de Riel, J.K.1
Paulus, H.2
-
9
-
-
0025166757
-
Nucleotide regulation of Escherichia coli glycerol kinase: Initial-velocity and substrate binding studies
-
Pettigrew, D. W., Yu, G.-J., and Liu, Y. (1990) Nucleotide regulation of Escherichia coli glycerol kinase: initial-velocity and substrate binding studies, Biochemistry 29, 8620-8627.
-
(1990)
Biochemistry
, vol.29
, pp. 8620-8627
-
-
Pettigrew, D.W.1
Yu, G.-J.2
Liu, Y.3
-
10
-
-
0029948487
-
The sugar kinase/heat shock protein 70/actin superfamily: Implications of conserved structure for mechanism
-
Hurley, J. H. (1996) The sugar kinase/heat shock protein 70/actin superfamily: implications of conserved structure for mechanism, Annu. Rev. Biophys. Biomol. Struct. 25, 137-162.
-
(1996)
Annu. Rev. Biophys. Biomol. Struct
, vol.25
, pp. 137-162
-
-
Hurley, J.H.1
-
11
-
-
0033596853
-
Crystal structure of Escherichia coli glycerol kinase variant S58 → W in complex with nonhydrolyzable ATP analogues reveal a putative active conformation of the enzyme as a result of domain motion
-
Bystrom, C. E., Pettigrew, D. W., Branchaud, B. P., O'Brien, P., and Remington, S. J. (1999) Crystal structure of Escherichia coli glycerol kinase variant S58 → W in complex with nonhydrolyzable ATP analogues reveal a putative active conformation of the enzyme as a result of domain motion, Biochemistry 38, 3508-3518.
-
(1999)
Biochemistry
, vol.38
, pp. 3508-3518
-
-
Bystrom, C.E.1
Pettigrew, D.W.2
Branchaud, B.P.3
O'Brien, P.4
Remington, S.J.5
-
12
-
-
0015875125
-
Catalytic and allosteric properties of glycerol kinase from Escherichia coli
-
Thorner, J. W., and Paulus, H. (1973) Catalytic and allosteric properties of glycerol kinase from Escherichia coli, J. Biol. Chem. 248, 3922-3932.
-
(1973)
J. Biol. Chem
, vol.248
, pp. 3922-3932
-
-
Thorner, J.W.1
Paulus, H.2
-
13
-
-
0000539364
-
Glucose-induced conformational change in yeast hexokinase
-
Bennett Jr., W. S., and Steitz, T. A. (1978) Glucose-induced conformational change in yeast hexokinase, Proc. Natl. Acad. Sci. U.S.A. 75, 4848-4852.
-
(1978)
Proc. Natl. Acad. Sci. U.S.A
, vol.75
, pp. 4848-4852
-
-
Bennett Jr., W.S.1
Steitz, T.A.2
-
14
-
-
0030575783
-
The structure of an open state of b-actin at 265 Å resolution
-
Chik, J. K., Lindberg, U., and Schutt, C. E. (1996) The structure of an open state of b-actin at 265 Å resolution, J. Mol. Biol. 263, 607-623.
-
(1996)
J. Mol. Biol
, vol.263
, pp. 607-623
-
-
Chik, J.K.1
Lindberg, U.2
Schutt, C.E.3
-
15
-
-
0021288128
-
Glc of the phosphoenolpyruvate: Sugar phosphotransferase system and glycerol kinase of Salmonella typhimurium
-
Glc of the phosphoenolpyruvate: sugar phosphotransferase system and glycerol kinase of Salmonella typhimurium, J. Bacteriol. 158, 351-353.
-
(1984)
J. Bacteriol
, vol.158
, pp. 351-353
-
-
Postma, P.W.1
Epstein, W.2
Schuitema, A.R.J.3
Nelson, S.O.4
-
17
-
-
0014013188
-
Feedback inhibition of glycerol kinase, a catabolic enzyme in Escherichia coli
-
Zwaig, N., and Lin, E. C. C. (1966) Feedback inhibition of glycerol kinase, a catabolic enzyme in Escherichia coli, Science 153, 755-757.
-
(1966)
Science
, vol.153
, pp. 755-757
-
-
Zwaig, N.1
Lin, E.C.C.2
-
18
-
-
0027459485
-
Glc with glycerol kinase
-
Glc with glycerol kinase, Science 259, 673-677.
-
(1993)
Science
, vol.259
, pp. 673-677
-
-
Hurley, J.1
Faber, H.2
Worthylake, D.3
Meadow, N.4
Roseman, S.5
Pettigrew, D.6
Remington, S.7
-
19
-
-
0032533833
-
Glycerol kinase from Escherichia coli and an Ala65 → Thr mutant: The crystal structures reveal conformational changes with implications for allosteric regulation
-
Feese, M. D., Faber, H. R., Bystrom, C. E., Pettigrew, D. W., and Remington, S. J. (1998) Glycerol kinase from Escherichia coli and an Ala65 → Thr mutant: the crystal structures reveal conformational changes with implications for allosteric regulation, Structure 6, 1407-1418.
-
(1998)
Structure
, vol.6
, pp. 1407-1418
-
-
Feese, M.D.1
Faber, H.R.2
Bystrom, C.E.3
Pettigrew, D.W.4
Remington, S.J.5
-
20
-
-
0032564319
-
Crystal structure of a complex of Escherichia coli glycerol kinase and an allosteric effector fructose 1,6-bisphosphate
-
Ormo, M. O., Bystrom, C. E., and Remington, S. J. (1998) Crystal structure of a complex of Escherichia coli glycerol kinase and an allosteric effector fructose 1,6-bisphosphate, Biochemistry 37, 16565-16572.
-
(1998)
Biochemistry
, vol.37
, pp. 16565-16572
-
-
Ormo, M.O.1
Bystrom, C.E.2
Remington, S.J.3
-
21
-
-
0023879283
-
Escherichia coli glycerol kinase. Cloning and sequencing of the glpK gene and the primary structure of the enzyme
-
Pettigrew, D. W., Ma, D. P., Conrad, C. A., and Johnson, J. R. (1988) Escherichia coli glycerol kinase. Cloning and sequencing of the glpK gene and the primary structure of the enzyme, J. Biol. Chem. 263, 135-139.
-
(1988)
J. Biol. Chem
, vol.263
, pp. 135-139
-
-
Pettigrew, D.W.1
Ma, D.P.2
Conrad, C.A.3
Johnson, J.R.4
-
22
-
-
0345643778
-
A single amino acid change in Escherichia coli glycerol kinase abolishes glucose control of glycerol utilization in vivo
-
Pettigrew, D., Liu, W., Holmes, C., Meadow, N., and Roseman, S. (1996) A single amino acid change in Escherichia coli glycerol kinase abolishes glucose control of glycerol utilization in vivo, J. Bacteriol. 178, 2846-2852.
-
(1996)
J. Bacteriol
, vol.178
, pp. 2846-2852
-
-
Pettigrew, D.1
Liu, W.2
Holmes, C.3
Meadow, N.4
Roseman, S.5
-
24
-
-
0024403235
-
Crystallization and preliminary X-ray studies of Escherichia coli glycerol kinase
-
Faber, H. R., Pettigrew, D. W., and Remington, S. J. (1989) Crystallization and preliminary X-ray studies of Escherichia coli glycerol kinase, J. Mol. Biol. 207, 637-639.
-
(1989)
J. Mol. Biol
, vol.207
, pp. 637-639
-
-
Faber, H.R.1
Pettigrew, D.W.2
Remington, S.J.3
-
25
-
-
22144457451
-
Multiple-mutation reaction: A method for simultaneous introduction of multiple mutations into the glpK gene of Mycoplasma pneumoniae
-
Hames, C., Halbedel, S., Schilling, O., and Stulke, J. (2005) Multiple-mutation reaction: a method for simultaneous introduction of multiple mutations into the glpK gene of Mycoplasma pneumoniae, Appl. Environ. Microbiol. 71, 4097-4100.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 4097-4100
-
-
Hames, C.1
Halbedel, S.2
Schilling, O.3
Stulke, J.4
-
26
-
-
0027498262
-
Light scattering and the absolute characterization of macromolecules
-
Wyatt, P. J. (1993) Light scattering and the absolute characterization of macromolecules, Anal. Chim. Acta 272, 1-40.
-
(1993)
Anal. Chim. Acta
, vol.272
, pp. 1-40
-
-
Wyatt, P.J.1
-
27
-
-
0029862811
-
Assembly of the gigantic hemoglobin of the earthworm Lumbricus terrestris
-
Zhu, H., Ownby, D. W., Riggs, C. K., Nolasco, N. J., Stoops, J. K., and Riggs, A. F. (1996) Assembly of the gigantic hemoglobin of the earthworm Lumbricus terrestris, J. Biol. Chem. 271, 30007-30021.
-
(1996)
J. Biol. Chem
, vol.271
, pp. 30007-30021
-
-
Zhu, H.1
Ownby, D.W.2
Riggs, C.K.3
Nolasco, N.J.4
Stoops, J.K.5
Riggs, A.F.6
-
28
-
-
5144223105
-
Systematic investigation of protein phase behavior with a microfluidic formulator
-
Hansen, C. L., Sommer, M. O. A., and Quake, S. R. (2004) Systematic investigation of protein phase behavior with a microfluidic formulator, Proc. Natl. Acad. Sci. U.S.A. 101, 14431-14436.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, pp. 14431-14436
-
-
Hansen, C.L.1
Sommer, M.O.A.2
Quake, S.R.3
-
29
-
-
33750953828
-
Phase knowledge enables rational screens for protein crystallization
-
Anderson, M. J., Hansen, C. L., and Quake, S. R. (2006) Phase knowledge enables rational screens for protein crystallization, Proc. Nat. Acad. Sci. U.S.A. 103, 16746-16751.
-
(2006)
Proc. Nat. Acad. Sci. U.S.A
, vol.103
, pp. 16746-16751
-
-
Anderson, M.J.1
Hansen, C.L.2
Quake, S.R.3
-
30
-
-
33644962807
-
A microfluidic device for kinetic optimization of protein crystallization and in situ structure determination
-
Hansen, C. L., Classen, S., Berger, J. M., and Quake, S. R. (2006) A microfluidic device for kinetic optimization of protein crystallization and in situ structure determination, J. Am. Chem. Soc. 128, 3142-3143.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 3142-3143
-
-
Hansen, C.L.1
Classen, S.2
Berger, J.M.3
Quake, S.R.4
-
31
-
-
0031059866
-
Processing X-ray diffraction data collection in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing X-ray diffraction data collection in oscillation mode, Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
32
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1993) Crystallography & NMR system: a new software suite for macromolecular structure determination, Acta Crystallogr. D54, 905-921.
-
(1993)
Acta Crystallogr
, vol.D54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
33
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T. A., Zou, J.-Y., Cowan, S. W., and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models, Acta Crystallogr. A47, 110-119.
-
(1991)
Acta Crystallogr
, vol.A47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
34
-
-
0037441653
-
Structure validation by Calpha geometry: Phi, psi and Cbeta deviation
-
Lovell, S. C., Davis, I. W., Arendall, W. B., III., de Bakker, P. I., Word, J. M., Prisant, M. G., Richardson, J. S., and Richardson, D. C. (2003) Structure validation by Calpha geometry: phi, psi and Cbeta deviation, Proteins 50, 437-450.
-
(2003)
Proteins
, vol.50
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall III, W.B.3
de Bakker, P.I.4
Word, J.M.5
Prisant, M.G.6
Richardson, J.S.7
Richardson, D.C.8
-
35
-
-
0035182073
-
Use of TLS parameters to model anisotropic displacements in macromolecular refinement
-
Winn, M. D., Isupov, M. N., and Murshudov, G. N. (2001) Use of TLS parameters to model anisotropic displacements in macromolecular refinement, Acta Crystallogr. D57, 122-133.
-
(2001)
Acta Crystallogr
, vol.D57
, pp. 122-133
-
-
Winn, M.D.1
Isupov, M.N.2
Murshudov, G.N.3
-
36
-
-
0030883755
-
Protein domain movements: Detection of rigid domains and visualization of hinges in comparisons of atomic coordinates
-
Wriggers, W., and Schulten, K. (1997) Protein domain movements: detection of rigid domains and visualization of hinges in comparisons of atomic coordinates, Proteins: Struct., Funct., Genet. 29, 1-14.
-
(1997)
Proteins: Struct., Funct., Genet
, vol.29
, pp. 1-14
-
-
Wriggers, W.1
Schulten, K.2
-
37
-
-
0037168508
-
A robust and scalable microfluidic metering method that allows protein crystal growth by free interface diffusion
-
Hansen, C. L., Skordalakes, E., Berger, J. M., and Quake, S. R. (2002) A robust and scalable microfluidic metering method that allows protein crystal growth by free interface diffusion, Proc. Natl. Acad. Sci. U.S.A. 99, 16531-16536.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A
, vol.99
, pp. 16531-16536
-
-
Hansen, C.L.1
Skordalakes, E.2
Berger, J.M.3
Quake, S.R.4
-
38
-
-
0001897686
-
Assessment of phase accuracy by cross validation: The free R value
-
Brunger, A. (1993) Assessment of phase accuracy by cross validation: the free R value, Acta Crystallogr. D49, 24-36.
-
(1993)
Acta Crystallogr
, vol.D49
, pp. 24-36
-
-
Brunger, A.1
|