Stress-inducible flavodoxin from photosynthetic microorganisms. The mystery of flavodoxin loss from the plant genome

IUBMB Life

Volumn 59, Issue 4-5, 2007, Pages 355-360

  Zurbriggen, Matías D ^a   Tognetti, Vanesa B ^a   Carrillo, Néstor ^a  

^a UNIVERSIDAD NACIONAL DE ROSARIO   (Argentina)

Author keywords

Antioxidants; Electron transfer in proteins; Evolution; Iron; Oxidative stress; Reactive oxygen species

Indexed keywords

ACYL COENZYME A DESATURASE; CYTOCHROME P450; FLAVODOXIN; NITROGENASE; PYRUVATE SYNTHASE; SULFITE REDUCTASE;

AEROBIC METABOLISM; ALGA; CHLOROPLAST; CONFERENCE PAPER; CYANOBACTERIUM; ELECTRON TRANSPORT; ENTEROBACTERIACEAE; ENVIRONMENTAL STRESS; EUKARYOTE; FATTY ACID SYNTHESIS; GENOME; HELICOBACTER PYLORI; NITROGEN FIXATION; NONHUMAN; OXIDATION REDUCTION REACTION; OXIDATIVE STRESS; PHOTOSYNTHESIS; PHOTOTROPHIC BACTERIUM; PLANT GENETICS; PROKARYOTE; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN LOCALIZATION;

ANIMALS; CHLOROPLASTS; FLAVODOXIN; GENOME, PLANT; IRON; OXIDATION-REDUCTION; OXIDATIVE STRESS; PHOTOSYNTHESIS;

ALGAE; ANIMALIA; BACTERIA (MICROORGANISMS); CYANOBACTERIA; EMBRYOPHYTA; EUKARYOTA; NICOTIANA TABACUM; PROKARYOTA;

EID: 34248581202     PISSN: 15216543     EISSN: 15216551     Source Type: Journal    
DOI: 10.1080/15216540701258744     Document Type: Conference Paper

References (33)

1. Meimberg, K., Fischer, N., Rochaix, J. D., and Mühlenhoff, U. (1999) Lys35 of PsaC is required for the efficient photoreduction of flavodoxin by photosystem I from Chlamydomonas reinhardtii. Eur. J. Biochem. 263, 137-144.
2. Sancho, J. (2006) Flavodoxins: sequence, folding, binding, function and beyond. Cell. Mol. Life Sci. 63, 855-864.
3. Knaff, D. B. (2005) Ferredoxin and ferredoxin-dependent enzymes. In Oxygenic Photosynthesis: The Light Reactions (Ort, D. R., and Yocum, C. F., eds). pp. 333-361, Kluwer Academic Publishers, Dordrecht, the Netherlands.
4. Frey, M., Rothe, M., Wagner, A. F., and Knappe, J. (1994) Adenosylmethionine-dependent synthesis of the glycyl radical in pyruvate formate-lyase by abstraction of the glycine C-2 pro-S hydrogen atom. Studies of [2H]glycine-substituted enzyme and peptides homologous to the glycine 734 site. J. Biol. Chem. 269, 12432-12437.
5. Zheng, M., Doan, B., Schneider, T. D., and Storz, G. (1999) OxyR and SoxRS regulation of fur. J. Bacteriol. 181, 4639-4643.
6. Freigang, J., Diederichs, K., Schafer, K. P., Welte, W., and Paul, R. (2002) Crystal structure of oxidized flavodoxin, an essential protein in Helicobacter pylori. Protein Sci. 11, 253-261.
7. Nogués, I., Tejero, J., Hurley, J. K., Paladini, D., Frago, S., Tollin, G., Mayhew, S. G., Gómez-Moreno, C., Ceccarelli, E. A., Carrillo, N., and Medina, M. (2004) Role of the C-terminal tyrosine of ferredoxin-nicotinamide adenine dinucleotide phosphate reductase in the electron transfer processes with its protein partners ferredoxin and flavodoxin. Biochemistry 43, 6127-6137.
8. Dudley, K. H., Ehrenberg, A., Hemmerich, P., and Müller, F. (1964) Spektren und strukturen der am flavin-redoxsystem beteiligten partikeln. Helv. Chim. Acta 47, 1354-1383.
9. Nogués, I., Pérez-Dorado, I., Frago, S., Bittel, C., Mayhew, S. G., Gómez-Moreno, C., Hermoso, J. A., Medina, M., Cortez, N., and Carrillo, N. (2005) The ferredoxin-NADP(H) reductase from Rhodobacter capsulatus: molecular structure and catalytic mechanism. Biochemistry 44, 11730-11740.
10. Erdner, D. L., Price, N. M., Doucette, G. J., Peleato, M. L., and Anderson, D. M. (1999) Characterization of ferredoxin and flavodoxin as markers of iron limitation in marine phytoplankton. Mar. Ecol. Prog. Ser. 184, 43-53.
11. Blaschkowski, H. P., Neuer, G., Ludwig-Festl, M., and Knappe, J. (1982) Routes of flavodoxin and ferredoxin reduction in Escherichia coli. CoA-acylating pyruvate:flavodoxin and NADPH:flavodoxin oxidoreductases participating in the activation of pyruvate formatelyase. Eur. J. Biochem. 123, 563-569.
12. Gaudu, P., and Weiss, B. (2000) Flavodoxin mutants of Escherichia coli K-12. J. Bacteriol. 182, 1788-1793.
13. Djaman, O., Outten, F., and Imlay, J. A. (2004) Repair of oxidized iron-sulfur clusters in Escherichia coli. J. Biol. Chem. 279, 44590-44599.
14. + reductase catalytic mechanism. Eur. J. Biochem. 270, 1900-1915.
15. Mazouni, K., Domain, F., Chauvat, F., and Cassier-Chauvat, C. (2003) Expression and regulation of the crucial plant-like ferredoxin of cyanobacteria. Mol. Microbiol. 49, 1019-1029.
16. Thimm, O., Essigmann, B., Kloska, S., Altmann, T., and Buckhout, T. J. (2001) Response of Arabidopsis to iron deficiency stress as revealed by microarray analysis. Plant Physiol. 127, 1030-1043.
17. Singh, A. K., Li, H., and Sherman, L. A. (2004) Microarray analysis and redox control of gene expression in the cyanobacterium Synechocystis sp. PCC 6803. Physiol. Plant. 120, 27-35.
18. Yousef, N., Pistorius, E. K., and Michel, K. P. (2003) Comparative analysis of idiA and isiA transcription under iron starvation and oxidative stress in Synechococcus elongatus PCC 7942 wild-type and selected mutants. Arch. Microbiol. 180, 471-483.
19. Pomposiello, P. J., Bennik, M. H., and Demple, B. (2001) Genomewide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate. J. Bacteriol. 183, 3890-3902.
20. Giró , M., Carrillo, N., and Krapp, A. R. (2006) Glucose 6-phosphate dehydrogenase and ferredoxin-NADP(H) reductase contribute to damage repair during the soxRS response of Escherichia coli. Microbiology 152, 1119-1128.
21. Tognetti, V. B., Palatnik, J. F., Fillat, M. F., Melzer, M., Hajirezaei, M.-R., Valle, E. M., and Carrillo, N. (2006) Functional replacement of ferredoxin by a cyanobacterial flavodoxin in tobacco plants confers broad range stress tolerance. Plant Cell 18, 2035-2050.
22. Fukuyama, K., Wakabayashi, S., Matsubara, H., and Rogers, L. J. (1990) Tertiary structure of oxidized flavodoxin from an eukaryotic red alga Chondrus crispus at 2.35-Å resolution. J. Biol. Chem. 265, 15804-15812.
23. Peleato, M. L., Ayora, S., Inda, L. A., and Gómez-Moreno, C. (1994) Isolation and characterization of two different flavodoxins from the eukaryote Chlorella fusca. Biochem. J. 302, 807-811.
24. Zhaxybayeva, O., Gogarten, J. P., Charlebois, R. L., Doolittle, W. F., and Papke, R. T. (2006) Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events. Genome 16, 1099-1108.
25. Rice, D. W., and Palmer, J. D. (2006) An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters. BMC Biol. 4, 31.
26. Delwiche, C. F., and Palmer, J. D. (1996) Rampant horizontal transfer and duplication of Rubisco genes in eubacteria and plastids. Mol. Biol. Evol. 31, 873-882.
27. Palenik, B., Ren, Q., Dupont, C. L., Myers, G. S., Heidelberg, J. F., Badger, J. H., Madupu, R., Nelson, W. C., Brinkac, L. M., Dodson, R. J., Durkin, A. S., Daugherty, S. C., Sullivan, S. A., Khouri, H., Mohamoud, Y., Halpin, R., and Paulsen, I. T. (2006) Genome sequence of Synechococcus CC9311: insights into adaptation to a coastal environment. Proc. Natl. Acad. Sci. USA 103, 13555-13559.
28. Sunda, W. G., Swift, D. G., and Huntsman, S. A. (1991) Low iron requirement for growth in oceanic phytoplankton. Nature 431, 689-692.
29. Peers, G., and Price, N. M. (2006) Copper-containing plastocyanin used for electron transport by an oceanic diatom. Nature 441, 341-344.
30. Palenik, B., Brahamsha, B., Larimer, F. W., Land, M., Hauser, L., Chain, P., Lamerdin, J., Regala, W., Allen, E. E., McCarren, J., Paulsen, I., Dufresne, A., Partensky, F., Webb, E. A., and Waterbury, J. (2003) The genome of a motile marine Synechococcus. Nature 424, 1037-1042.
31. Rocap, G., Larimer, F. W., Lamerdin, J., Malfatti, S., Chain, P., Ahlgren, N. A., Arellano, A., Coleman, M., Hauser, L., Hess, W. R., Johnson, Z. I., Land, M., Lindell, D., Post, A. F., Regala, W., Shah, M., Shaw, S. L., Steglich, C., Sullivan, M. B., Ting, C. S., Tolonen, A., Webb, E. A., Zinser, E. R., and Chisholm, S. W. (2003) Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature 434, 1042-1047.
32. Guerinot, M. L., and Yi, Y. (1994) Iron: nutritious, noxious and not readily available. Plant Physiol. 104, 815-820.
33. Jenkins, C. M., and Waterman, M. R. (1994) Flavodoxin and NADPH-flavodoxin reductase from Escherichia coli support bovine cytochrome P450c17 hydroxylase activities. J. Biol. Chem. 269, 27401-27408.