Identification of Differentially Expressed Genes Using Annealing Control Primer-based GeneFishing in Human Squamous Cell Cervical Carcinoma

Clinical Oncology

Volumn 19, Issue 5, 2007, Pages 308-318

  Choi, Y W ^a   Kim, Y W ^b   Bae, S M ^b   Kwak, S Y ^b   Chun, H J ^a   Tong, S Y ^a   Lee, H N ^a   Shin, J C ^a   Kim, K T ^c   Kim, Y J ^c   Ahn, W S ^a  

^a The Catholic University of Korea   (South Korea)

^b The Catholic University of Korea   (South Korea)

^c Hanyang University   (South Korea)

Author keywords

Annealing control primer; differentially expressed gene; GeneFishing; squamous cell cervical carcinoma

Indexed keywords

CALGRANULIN; CLUSTERIN; FIBRILLARIN; PRIMER DNA;

ARTICLE; CONTROLLED STUDY; DNA SEQUENCE; DOWN REGULATION; FEMALE; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE IDENTIFICATION; GENE SEQUENCE; HUMAN; HUMAN TISSUE; KOREA; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; UNIVERSITY HOSPITAL; UPREGULATION; UTERINE CERVIX CARCINOMA;

CARCINOMA, SQUAMOUS CELL; DNA PRIMERS; FEMALE; GENE EXPRESSION PROFILING; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; UTERINE CERVICAL NEOPLASMS;

EID: 34248576435     PISSN: 09366555     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.clon.2007.02.010     Document Type: Article

References (39)

1. Chung H.H., Jang M.J., Jung K.W., et al. Cervical cancer incidence and survival in Korea: 1993-2002. Int J Gynecol Cancer 16 (2006) 1833-1838
2. Ho G.Y., Burk R.D., Klein S., et al. Persistent genital human papillomavirus infection as a risk factor for persistent cervical dysplasia. J Natl Cancer Inst 87 (1995) 1365-1371
3. Iwasawa A., Nieminen P., Lehtinen M., and Paavonen J. Human papillomavirus DNA in uterine cervical squamous cell carcinoma and adenocarcinoma detected by polymerase chain reaction. Cancer 77 (1996) 2275-2279
4. Howley P.M. Role of the human papillomaviruses in human cancer. Cancer Res 51 (1991) 5019-5022
5. Werness B.A., Levine A.J., and Howley P.M. Association of human papillomavirus types 16 and 18 E6 proteins with p53. Science 248 (1990) 76-79
6. Dyson N., Howley P.M., and Munger K. The human papillomavirus 16 E7 oncoprotein is able to bind to the retinoblastoma gene product. Science 243 (1989) 943-947
7. Padmanathan Y.A., and Arivananthan M.M. Dual detection of human herpesvirus-6 and human papillomavirus type 16 and 18 in cervical carcinoma. J Obstet Gynaecol 17 (1997) 86-87
8. Scheffner M., Munger K., Byrne J.C., and Howley P.M. The state of the p53 and retinoblastoma genes in human cervical carcinoma cell lines. Proc Natl Acad Sci 88 (1991) 5523-5527
9. Chan P.G., Sung H.Y., and Sawaya G.F. Changes in cervical cancer incidence after three decades of screening US women less than 30 years old. Obstet Gynecol 102 (2003) 765-773
10. Gustafsson L., and Adami H.O. Natural history of cervical neoplasia; consistent results obtained by an identification technique. Br J Cancer 60 (1989) 132-141
11. Van Oortmarssen G.J., and Habbema J.D. Epidemiological evidence for age-dependent regression of pre-invasive cervical cancer. Br J Cancer 64 (1991) 559-565
12. Dellas A., Schultheiss E., Almendral A.C., et al. Altered expression of mdm-2 and its association with p53 protein status, tumor-cell-proliferation rate and prognosis in cervical neoplasia. Int J Cancer 74 (1997) 421-425
13. Werner-Wasik M., Schmid C.H., Bornstein L., Ball H.G., Smith D.M., and Madoc-Jones H. Prognostic factors for local and distant recurrence in stage I and II cervical carcinoma. Int J Radiat Oncol Biol Phys 32 (1995) 1309-1317
14. Herrington C.S. Human papillomaviruses (HPV) in gynecological cytology: from molecular biology to clinical testing. Cytopatholology 6 (1995) 176-189
15. Lazo P.A. The molecular genetics of cervical carcinoma. Br J Cancer 80 (1999) 2008-2018
16. Stollberg J., Urschiz J., Urban Z., and Boyd C.D. A quantitative evaluation of SAGE. Genome Res 10 (2000) 1241-1248
17. Schena M., Shalon D., Davis R.W., and Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 (1995) 467-470
18. Liang P., and Pardee A.B. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257 (1992) 967-971
19. Hwang I.T., Kim Y.J., Kim S.H., Kwak C.I., Gu Y.Y., and Chun J.Y. Annealing control primer system for improving specificity of PCR amplification. Biotechniques 35 (2003) 1180-1184
20. Contag S.A., Gostout B.S., Clayton A.C., Dixon M.H., McGovern R.M., and Calhoun E.S. Comparison of gene expression in squamous cell carcinoma and adenocarcinoma of the uterine cervix. Gynecol Oncol 95 (2004) 610-617
21. Que N., Hamai Y., Mitani Y., et al. Gene expression profile of gastric carcinoma: identification of genes and tags potentially involved in invasion, metastasis, and carcinogenesis by serial analysis of gene expression. Cancer Res 64 (2004) 2397-2405
22. Shalon D. Gene expression micro-arrays: a new tool for genomic research. Pathol Biol 49 (1998) 107-109
23. Kihara C., Tsunoda T., Tanaka T., et al. Prediction of sensitivity of esophageal tumors to adjuvant chemotherapy by cDNA microarray analysis of gene expression profiles. Cancer Res 61 (2001) 6474-6479
24. Welss T., Papoutsaki M., Michel G., et al. Molecular basis of basal cell carcinoma: analysis of differential gene expression by differential display PCR and expression array. Int J Cancer 104 (2003) 66-72
25. Seo M.J., Bae S.M., Park K.M., and Ahn W.S. Identification of gene expression and gene ontology classification by differential display RT-PCR in human cervical squamous cell carcinoma. Korean Soc Obstet Gynecol 47 (2004) 684-693
26. Kim B.H., Bae S.M., Seo M.J., and Ahn W.S. Changes of gene expression between HaCaT and SiHa cells using GeneFishing PCR. Korean J Gynecol Oncol Colposc 14 (2003) 300-305
27. Lee A.Y., Kim N.H., and Park S.W. All trans-retinoic acid (ATRA) elevated eukaryotic translation initiation factor 4A1 (eIF4A1) mRNA in ATRA-responsive vitiliginous epidermis. Pigment Cell Res 17 (2004) 659-667
28. Komatsu K., Murata K., Kameyama M., et al. Expression of S100A6 and S100A4 in matched samples of human colorectal mucosa, primary colorectal adenocarcinomas and liver metastases. Oncology 63 (2002) 192-200
29. Gebhardt C., Breitenbach U., Tuckermann J.P., Dittrich B.T., Richter K.H., and Angel P. Calgranulins S100A8 and S100A9 are negatively regulated by glucocorticoids in a c-Fos-dependent manner and overexpressed throughout skin carcinogenesis. Oncogene 21 (2002) 4266-4276
30. Ohan N., Sabourin D., Booth R.A., and Liu X.J. Xenopus laevis TRK-fused gene (TFG) is an SH3 domain binding protein highly expressed in the cement gland. Mol Reprod Dev 56 (2000) 336-344
31. Roccato E., Pagliardini S., Cleris L., et al. Role of TFG sequences outside the coiled-coil domain in TRK-T3 oncogenic activation. Oncogene 22 (2003) 807-818
32. Battig P., Saudan P., Gunde T., and Bachmann M.F. Enhanced apoptotic activity of a structurally optimized form of galectin-1. Mol Immunol 41 (2004) 9-18
33. Ben-Yehuda S., Russell C.S., Dix I., Beggs J.D., and Kupiec M. Extensive genetic interactions between PRP8 and PRP17/CDC40, two yeast genes involved in pre-mRNA splicing and cell cycle progression. Genetics 154 (2000) 61-71
34. Caccamo A.E., Scaltriti M., Caporali A., et al. Cell detachment and apoptosis induction of immortalized human prostate epithelial cells are associated with early accumulation of a 45 kDa nuclear isoform of clusterin. Biochem J 382 (2004) 157-168
35. Westendorf J.M., Konstantinov K.N., Wormsley S., et al. M phase phosphoprotein 10 is a human U3 small nucleolar ribonucleoprotein component. Mol Biol Cell 9 (1998) 437-449
36. Clark B.R., Kelly S.E., and Fleming S. Calgranulin expression and association with the keratinocyte cytoskeleton. J Pathol 160 (1990) 25-30
37. Park J.H., Park J.S., Ju S.K., et al. Clusterin mRNA expression in apoptotic and activated rat thymocytes. Cell Res 13 (2003) 49-58
38. Waters K.M., Safe S., and Gaido K.W. Differential gene expression in response to methoxychlor and estradiol through ERalpha, ERbeta, and AR in reproductive tissues of female mice. Toxicol Sci 63 (2001) 47-56
39. Leskov K.S., Klokov D.Y., Li J., Kinsella T.J., and Boothman D.A. Synthesis and functional analyses of nuclear clusterin, a cell death protein. J Biol Chem 278 (2003) 11590-11600