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Volumn 362, Issue , 2007, Pages 245-264

Microarrays: Statistical methods for circadian rhythms

Author keywords

Circadian rhythm; Microarray; P valued value

Indexed keywords

ANIMAL; ARTICLE; CIRCADIAN RHYTHM; DNA MICROARRAY; FOURIER ANALYSIS; GENE EXPRESSION PROFILING; GENETICS; STATISTICAL ANALYSIS; STATISTICS;

EID: 34248512714     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1385/1-59745-257-2:245     Document Type: Article
Times cited : (9)

References (28)
  • 1
    • 0031668050 scopus 로고    scopus 로고
    • Fundamental concepts in statistics: Elucidation and illustration
    • Curran-Everett, D., Taylor, S., and Kafadar, K. (1998) Fundamental concepts in statistics: elucidation and illustration, J. Appl. Physiol. 85, 775-786.
    • (1998) J. Appl. Physiol , vol.85 , pp. 775-786
    • Curran-Everett, D.1    Taylor, S.2    Kafadar, K.3
  • 3
    • 0036682099 scopus 로고    scopus 로고
    • A transcription factor response element for gene expression during circadian night
    • Ueda, H. R., Chen, W., Adachi, A., et al. (2002) A transcription factor response element for gene expression during circadian night. Nature 418, 534-539.
    • (2002) Nature , vol.418 , pp. 534-539
    • Ueda, H.R.1    Chen, W.2    Adachi, A.3
  • 5
    • 0037007625 scopus 로고    scopus 로고
    • Extensive and divergent circadian gene expression in liver and heart
    • Storch, K. F., Lipan, O., Leykin, I., et al. (2002) Extensive and divergent circadian gene expression in liver and heart. Nature 417, 78-83.
    • (2002) Nature , vol.417 , pp. 78-83
    • Storch, K.F.1    Lipan, O.2    Leykin, I.3
  • 6
    • 18444414586 scopus 로고    scopus 로고
    • Coordinated transcription of key pathways in the mouse by the circadian clock
    • Panda, S., Antoch, M. P., Miller, B. H., et al. (2002) Coordinated transcription of key pathways in the mouse by the circadian clock. Cell 109, 307-320.
    • (2002) Cell , vol.109 , pp. 307-320
    • Panda, S.1    Antoch, M.P.2    Miller, B.H.3
  • 7
    • 0036848612 scopus 로고    scopus 로고
    • Genome-wide expression analysis in Drosophila reveals genes controlling circadian behavior
    • Ceriani, M. F., Hogenesch, J. B., Yanovsky, M., Panda, S., Straume, M., and Kay, S. A. (2002) Genome-wide expression analysis in Drosophila reveals genes controlling circadian behavior. J. Neurosci. 22, 9305-9319.
    • (2002) J. Neurosci , vol.22 , pp. 9305-9319
    • Ceriani, M.F.1    Hogenesch, J.B.2    Yanovsky, M.3    Panda, S.4    Straume, M.5    Kay, S.A.6
  • 8
    • 0034671791 scopus 로고    scopus 로고
    • Orchestrated transcription of key pathways in Arabidopsis by the circadian clock
    • Harmer, S. L., Hogenesch, J. B., Straume, M., et al. (2000) Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290, 2110-2113.
    • (2000) Science , vol.290 , pp. 2110-2113
    • Harmer, S.L.1    Hogenesch, J.B.2    Straume, M.3
  • 10
    • 16744364055 scopus 로고    scopus 로고
    • Genome-wide expression analysis of mouse liver reveals CLOCK-regulated circadian output genes
    • 41, 519-41,527
    • Oishi, K., Miyazaki, K., Kadota, K., et al. (2003) Genome-wide expression analysis of mouse liver reveals CLOCK-regulated circadian output genes. J. Biol. Chem. 278, 41, 519-41,527.
    • (2003) J. Biol. Chem , vol.278
    • Oishi, K.1    Miyazaki, K.2    Kadota, K.3
  • 11
    • 0347093359 scopus 로고    scopus 로고
    • The transcriptional repressor STRA13 regulates a subset of peripheral circadian outputs
    • Grechez-Cassiau, A., Panda, S., Lacoche, S., et al. (2004) The transcriptional repressor STRA13 regulates a subset of peripheral circadian outputs. J. Biol. Chem. 279, 1141-1150.
    • (2004) J. Biol. Chem , vol.279 , pp. 1141-1150
    • Grechez-Cassiau, A.1    Panda, S.2    Lacoche, S.3
  • 12
    • 0346258011 scopus 로고    scopus 로고
    • Gating of the rapid shade-avoidance response by the circadian clock in plants
    • Salter, M. G., Franklin, K. A., and Whitelam, G. C. (2003) Gating of the rapid shade-avoidance response by the circadian clock in plants. Nature 426, 680-683.
    • (2003) Nature , vol.426 , pp. 680-683
    • Salter, M.G.1    Franklin, K.A.2    Whitelam, G.C.3
  • 13
    • 0037047054 scopus 로고    scopus 로고
    • Influence of the period-dependent circadian clock on diurnal, circadian, and aperiodic gene expression in Drosophila melanogaster
    • Lin, Y., Han, M., Shimada, B., et al. (2002) Influence of the period-dependent circadian clock on diurnal, circadian, and aperiodic gene expression in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 99, 9562-9567.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 9562-9567
    • Lin, Y.1    Han, M.2    Shimada, B.3
  • 14
    • 0036152706 scopus 로고    scopus 로고
    • Implications of circadian gene expression in kidney, liver and the effects of fasting on pharmacogenomic studies
    • Kita, Y., Shiozawa, M., Jin, W., et al. (2002) Implications of circadian gene expression in kidney, liver and the effects of fasting on pharmacogenomic studies. Pharmacogenetics 12, 55-65.
    • (2002) Pharmacogenetics , vol.12 , pp. 55-65
    • Kita, Y.1    Shiozawa, M.2    Jin, W.3
  • 15
    • 0036143201 scopus 로고    scopus 로고
    • cDNA array analysis of pineal gene expression reveals circadian rhythmicity of the dominant negative helix-loop-helix protein-encoding gene, Id-1
    • Humphries, A., Klein, D., Baler, R., and Carter, D. A. (2002) cDNA array analysis of pineal gene expression reveals circadian rhythmicity of the dominant negative helix-loop-helix protein-encoding gene, Id-1. J. Neuroendocrinal. 14, 101-108.
    • (2002) J. Neuroendocrinal , vol.14 , pp. 101-108
    • Humphries, A.1    Klein, D.2    Baler, R.3    Carter, D.A.4
  • 16
    • 0037113902 scopus 로고    scopus 로고
    • Glucose down-regulates Perl and Per2 mRNA levels and induces circadian gene expression in cultured Rat-1 fibroblasts
    • Hirota, T., Okano, T., Kokame, K., Shirotani-Ikejima, H.,Miyata, T., and Fukada, Y. (2002) Glucose down-regulates Perl and Per2 mRNA levels and induces circadian gene expression in cultured Rat-1 fibroblasts. J. Biol. Chem. 277, 44,244-44,251.
    • (2002) J. Biol. Chem , vol.277
    • Hirota, T.1    Okano, T.2    Kokame, K.3    Shirotani-Ikejima, H.4    Miyata, T.5    Fukada, Y.6
  • 17
    • 0037006807 scopus 로고    scopus 로고
    • Circadian programs of transcriptional activation, signaling, and protein turnover revealed by microarray analysis of mammalian cells
    • Duffield, G. E., Best, J. D., Meurers, B. H., Bittner, A., Loros, J. J., and Dunlap, J. C. (2002) Circadian programs of transcriptional activation, signaling, and protein turnover revealed by microarray analysis of mammalian cells. Curr. Biol. 12, 551-557.
    • (2002) Curr. Biol , vol.12 , pp. 551-557
    • Duffield, G.E.1    Best, J.D.2    Meurers, B.H.3    Bittner, A.4    Loros, J.J.5    Dunlap, J.C.6
  • 18
    • 0037006795 scopus 로고    scopus 로고
    • Circadian cycling of the mouse liver transcriptome, as revealed by cDNA microarray, is driven by the suprachiasmatic nucleus
    • Akhtar, R. A., Reddy, A. B., Maywood, E. S., et al. (2002) Circadian cycling of the mouse liver transcriptome, as revealed by cDNA microarray, is driven by the suprachiasmatic nucleus. Curr. Biol. 12, 540-550.
    • (2002) Curr. Biol , vol.12 , pp. 540-550
    • Akhtar, R.A.1    Reddy, A.B.2    Maywood, E.S.3
  • 19
    • 0035108613 scopus 로고    scopus 로고
    • Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis
    • Schaffer, R., Landgraf, J., Accerbi, M., Simon, V., Larson, M., and Wisman, E. (2001) Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis. Plant Cell 13, 113-123.
    • (2001) Plant Cell , vol.13 , pp. 113-123
    • Schaffer, R.1    Landgraf, J.2    Accerbi, M.3    Simon, V.4    Larson, M.5    Wisman, E.6
  • 20
    • 0035977158 scopus 로고    scopus 로고
    • Microarray analysis and organization of circadian gene expression in Drosophila
    • McDonald, M. J., and Rosbash, M. (2001) Microarray analysis and organization of circadian gene expression in Drosophila. Cell 107, 567-578.
    • (2001) Cell , vol.107 , pp. 567-578
    • McDonald, M.J.1    Rosbash, M.2
  • 21
    • 0035861573 scopus 로고    scopus 로고
    • Circadian regulation of diverse gene products revealed by mRNA expression profiling of synchronized fibroblasts
    • Grundschober, C., Delaunay, F., Puhlhofer, A., et al. (2001) Circadian regulation of diverse gene products revealed by mRNA expression profiling of synchronized fibroblasts. J. Biol. Chem. 276, 46,751-46,758.
    • (2001) J. Biol. Chem , vol.276
    • Grundschober, C.1    Delaunay, F.2    Puhlhofer, A.3
  • 22
    • 0042709612 scopus 로고    scopus 로고
    • The frequency gene is required for temperature-dependent regulation of many clock-controlled genes in Neurospora crassa
    • Nowrousian, M., Duffield, G. E., Loros, J. J., and Dunlap, J. C. (2003) The frequency gene is required for temperature-dependent regulation of many clock-controlled genes in Neurospora crassa. Genetics,16A, 923-933.
    • (2003) Genetics , vol.16 A , pp. 923-933
    • Nowrousian, M.1    Duffield, G.E.2    Loros, J.J.3    Dunlap, J.C.4
  • 23
    • 0141557951 scopus 로고    scopus 로고
    • DNA microarray analyses of circadian timing: The genomic basis of biological time
    • Duffield, G. E. (2003) DNA microarray analyses of circadian timing: the genomic basis of biological time. J. Neuroendocrinal. 15, 991-1002.
    • (2003) J. Neuroendocrinal , vol.15 , pp. 991-1002
    • Duffield, G.E.1
  • 24
    • 0035983268 scopus 로고    scopus 로고
    • The ups and downs of daily life: Profiling circadian gene expression in Drosophila
    • Etter, P. D., and Ramaswami, M. (2002) The ups and downs of daily life: profiling circadian gene expression in Drosophila. Bioessays 24, 494-498.
    • (2002) Bioessays , vol.24 , pp. 494-498
    • Etter, P.D.1    Ramaswami, M.2
  • 25
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad, B. M., Irizarry, R. A., Astrand, M., and Speed, T. P. (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19, 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 26
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush, J. (2002) Microarray data normalization and transformation. Nat. Genet. 32 Suppl, 496-501.
    • (2002) Nat. Genet , vol.32 , Issue.SUPPL. , pp. 496-501
    • Quackenbush, J.1
  • 27
    • 0037208157 scopus 로고    scopus 로고
    • NetAffx: Affymetrix probesets and annotations
    • Liu, G., Loraine, A.E., Shigeta, R., et al. (2003) NetAffx: Affymetrix probesets and annotations. Nucleic Acids Res. 31, 82-86.
    • (2003) Nucleic Acids Res , vol.31 , pp. 82-86
    • Liu, G.1    Loraine, A.E.2    Shigeta, R.3
  • 28
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J. D., and Tibshirani, R. (2003) Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA 100, 9440-9445.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2


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