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Volumn 81, Issue 10, 2007, Pages 5349-5361

Epigenetic status of an adenovirus type 12 transgenome upon long-term cultivation in hamster cells

Author keywords

[No Author keywords available]

Indexed keywords

BISULFITE; CPG OLIGODEOXYNUCLEOTIDE; DNA FRAGMENT; HISTONE; MICROCOCCAL NUCLEASE; REPETITIVE DNA; VIRUS DNA;

EID: 34248373767     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.02624-06     Document Type: Article
Times cited : (29)

References (50)
  • 1
    • 1442323788 scopus 로고    scopus 로고
    • Bisulfite conversion of genomic DNA tor methylation analysis: Protocol simplification with higher recovery applicable to limited samples and increased throughput
    • Boyd, V. L., and G. Zon. 2004. Bisulfite conversion of genomic DNA tor methylation analysis: protocol simplification with higher recovery applicable to limited samples and increased throughput. Anal. Biochem. 326:278-280.
    • (2004) Anal. Biochem , vol.326 , pp. 278-280
    • Boyd, V.L.1    Zon, G.2
  • 2
    • 0029876439 scopus 로고    scopus 로고
    • Tissue-specific factors additively increase the probability of the all-or-none formation of a hypersensitive site
    • Boyes, J., and G. Felsenfeld. 1996. Tissue-specific factors additively increase the probability of the all-or-none formation of a hypersensitive site. EMBO J. 15:2496-2507.
    • (1996) EMBO J , vol.15 , pp. 2496-2507
    • Boyes, J.1    Felsenfeld, G.2
  • 4
    • 0020691774 scopus 로고
    • DNA methylation and gene activity
    • Doerfler, W. 1983. DNA methylation and gene activity. Annu. Rev. Biochem. 52:93-124.
    • (1983) Annu. Rev. Biochem , vol.52 , pp. 93-124
    • Doerfler, W.1
  • 5
    • 0026201153 scopus 로고
    • Patterns of DNA methylation - evolutionary vestiges of foreign DNA inactivation as a host defense mechanism - a proposal
    • Doerfler, W. 1991. Patterns of DNA methylation - evolutionary vestiges of foreign DNA inactivation as a host defense mechanism - a proposal. Biol. Chem. Hoppe-Seyler 372:557-564.
    • (1991) Biol. Chem. Hoppe-Seyler , vol.372 , pp. 557-564
    • Doerfler, W.1
  • 6
    • 33645958291 scopus 로고    scopus 로고
    • De novo methylation, long-term promoter silencing, methylation patterns in the human genome, and consequences of foreign DNA insertion
    • Doerfler, W. 2006. De novo methylation, long-term promoter silencing, methylation patterns in the human genome, and consequences of foreign DNA insertion. Curr. Top. Microbiol. Immunol. 301:125-175.
    • (2006) Curr. Top. Microbiol. Immunol , vol.301 , pp. 125-175
    • Doerfler, W.1
  • 7
    • 0020037143 scopus 로고
    • Integrated adenovirus type 12 DNA in the transformed hamster cell line T637: Sequence arrangements at the termini of viral DNA and mode of amplification
    • Eick, D., and W. Doerfler. 1982. Integrated adenovirus type 12 DNA in the transformed hamster cell line T637: sequence arrangements at the termini of viral DNA and mode of amplification. J. Virol. 42:317-321.
    • (1982) J. Virol , vol.42 , pp. 317-321
    • Eick, D.1    Doerfler, W.2
  • 8
    • 0020995854 scopus 로고
    • Excision of amplified viral DNA at palindromic sequences from the adenovirus type 12-transformed hamster cell line T637
    • Eick, D., B. Kemper, and W. Doerfler. 1983. Excision of amplified viral DNA at palindromic sequences from the adenovirus type 12-transformed hamster cell line T637. EMBO J. 2:1981-1986.
    • (1983) EMBO J , vol.2 , pp. 1981-1986
    • Eick, D.1    Kemper, B.2    Doerfler, W.3
  • 10
    • 0018135422 scopus 로고
    • Morphological revertants of adenovirus type 12-transformed hamster cells
    • Groneberg, J., D. Sutter, H. Soboll, and W. Doerfler. 1978. Morphological revertants of adenovirus type 12-transformed hamster cells. J. Gen. Virol. 40:635-645.
    • (1978) J. Gen. Virol , vol.40 , pp. 635-645
    • Groneberg, J.1    Sutter, D.2    Soboll, H.3    Doerfler, W.4
  • 11
    • 0039410919 scopus 로고
    • DNA methylation in adenovirus, adenovirus-transformed cells, and host cells
    • Günthert, U., M. Schweiger, M. Stupp, and W. Doerfler. 1976. DNA methylation in adenovirus, adenovirus-transformed cells, and host cells. Proc. Natl. Acad. Sci. USA 73:3923-3927.
    • (1976) Proc. Natl. Acad. Sci. USA , vol.73 , pp. 3923-3927
    • Günthert, U.1    Schweiger, M.2    Stupp, M.3    Doerfler, W.4
  • 12
    • 0032213430 scopus 로고    scopus 로고
    • Cytosines adjacent to methylated CpG sites can be partially resistant to conversion in genomic bisulfite sequencing leading to methylation artifacts
    • Harrison, J., C. Stirzaker, and S. J. Clark. 1998. Cytosines adjacent to methylated CpG sites can be partially resistant to conversion in genomic bisulfite sequencing leading to methylation artifacts. Anal. Biochem. 264:129-132.
    • (1998) Anal. Biochem , vol.264 , pp. 129-132
    • Harrison, J.1    Stirzaker, C.2    Clark, S.J.3
  • 13
    • 0029050539 scopus 로고
    • Chromosomal insertion of foreign (adenovirus type 12, plasmid, or bacteriophage lambda) DNA is associated with enhanced methylation of cellular DNA segments
    • Heller, H., C. Kämmer, P. Wilgenbus, and W. Doerfler. 1995. Chromosomal insertion of foreign (adenovirus type 12, plasmid, or bacteriophage lambda) DNA is associated with enhanced methylation of cellular DNA segments. Proc. Natl. Acad. Sci. USA 92:5515-5519.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 5515-5519
    • Heller, H.1    Kämmer, C.2    Wilgenbus, P.3    Doerfler, W.4
  • 14
    • 0033588291 scopus 로고    scopus 로고
    • Factors affecting de novo methylation of foreign DNA in mouse embryonic stem cells
    • Hertz, J., G. Schell, and W. Doerfler. 1999. Factors affecting de novo methylation of foreign DNA in mouse embryonic stem cells. J. Biol. Chem. 274:24232-24240.
    • (1999) J. Biol. Chem , vol.274 , pp. 24232-24240
    • Hertz, J.1    Schell, G.2    Doerfler, W.3
  • 15
    • 0034795934 scopus 로고    scopus 로고
    • The overexpression of the adenovirus type 12 pTP or E1A gene facilitates Ad12 DNA replication in nonpermissive BHK21 hamster cells
    • Hösel, M., D. Webb, J. Schröer, B. Schmitz, and W. Doerfler. 2001. The overexpression of the adenovirus type 12 pTP or E1A gene facilitates Ad12 DNA replication in nonpermissive BHK21 hamster cells. J. Virol. 75:16041-16053.
    • (2001) J. Virol , vol.75 , pp. 16041-16053
    • Hösel, M.1    Webb, D.2    Schröer, J.3    Schmitz, B.4    Doerfler, W.5
  • 16
    • 0021861476 scopus 로고
    • Retrovirus-induced de novo methylation of flanking host sequences correlates with gene inactivation
    • Jähner, D., and R. Jaenisch. 1985. Retrovirus-induced de novo methylation of flanking host sequences correlates with gene inactivation. Nature 315:594-597.
    • (1985) Nature , vol.315 , pp. 594-597
    • Jähner, D.1    Jaenisch, R.2
  • 17
    • 0028935973 scopus 로고
    • Genomic sequencing reveals absence of DNA methylation in the major late promoter of adenovirus type 2 DNA in the virion and in productively infected cells
    • Kämmer, C., and W. Doerfler. 1995. Genomic sequencing reveals absence of DNA methylation in the major late promoter of adenovirus type 2 DNA in the virion and in productively infected cells. FEBS Lett. 362:301-305.
    • (1995) FEBS Lett , vol.362 , pp. 301-305
    • Kämmer, C.1    Doerfler, W.2
  • 18
    • 0030014167 scopus 로고    scopus 로고
    • The structure of adenovirus type 12 DNA integration sites in the hamster cell genome
    • Knoblauch, M., J. Schröer, B. Schmitz, and W. Doerfler. 1996. The structure of adenovirus type 12 DNA integration sites in the hamster cell genome. J. Virol. 70:3788-3796.
    • (1996) J. Virol , vol.70 , pp. 3788-3796
    • Knoblauch, M.1    Schröer, J.2    Schmitz, B.3    Doerfler, W.4
  • 19
    • 0027184784 scopus 로고
    • A rapid optimized protocol for downward alkaline Southern blotting of DNA
    • Koetsier, P. A., J. Schorr, and W. Doerfler. 1993. A rapid optimized protocol for downward alkaline Southern blotting of DNA. BioTechniques 15:260-262.
    • (1993) BioTechniques , vol.15 , pp. 260-262
    • Koetsier, P.A.1    Schorr, J.2    Doerfler, W.3
  • 20
    • 0037672689 scopus 로고    scopus 로고
    • An epigenetic road map for histone lysine methylation
    • Lachner, M., R. J. O'Sullivan, and T. Jenuwein. 2003. An epigenetic road map for histone lysine methylation. J. Cell Sci. 116:2117-2124.
    • (2003) J. Cell Sci , vol.116 , pp. 2117-2124
    • Lachner, M.1    O'Sullivan, R.J.2    Jenuwein, T.3
  • 21
    • 0036856355 scopus 로고    scopus 로고
    • MethPrimer: Designing primers for methylation PCRs
    • Li, L. C., and R. Dahiya. 2002. MethPrimer: designing primers for methylation PCRs. Bioinformatics 18:1427-1431.
    • (2002) Bioinformatics , vol.18 , pp. 1427-1431
    • Li, L.C.1    Dahiya, R.2
  • 22
    • 0023203297 scopus 로고
    • Insertion of adenovirus type 12 DNA in the vicinity of an intracisternal A particle genome in Syrian hamster tumor cells
    • Lichtenberg, U., C. Zock, and W. Doerfler. 1987. Insertion of adenovirus type 12 DNA in the vicinity of an intracisternal A particle genome in Syrian hamster tumor cells. J. Virol. 61:2719-2726.
    • (1987) J. Virol , vol.61 , pp. 2719-2726
    • Lichtenberg, U.1    Zock, C.2    Doerfler, W.3
  • 23
    • 0023699893 scopus 로고
    • Integration of foreign DNA into mammalian genome can be associated with hypomethylation at site of insertion
    • Lichtenberg, U., C. Zock, and W. Doerfler. 1988. Integration of foreign DNA into mammalian genome can be associated with hypomethylation at site of insertion. Virus Res. 11:335-342.
    • (1988) Virus Res , vol.11 , pp. 335-342
    • Lichtenberg, U.1    Zock, C.2    Doerfler, W.3
  • 24
    • 0035958048 scopus 로고    scopus 로고
    • Foreign DNA integration. Genome-wide perturbations of methylation and transcription in the recipient genomes
    • Müller, K., H. Heller, and W. Doerfler. 2001. Foreign DNA integration. Genome-wide perturbations of methylation and transcription in the recipient genomes. J. Biol. Chem. 276:14271-14278.
    • (2001) J. Biol. Chem , vol.276 , pp. 14271-14278
    • Müller, K.1    Heller, H.2    Doerfler, W.3
  • 25
    • 0141657877 scopus 로고    scopus 로고
    • DNA methylation in mammalian genomes: Promoter activity and genetic imprinting
    • R. Dulbecco ed, Academic Press, San Diego, CA
    • Munnes, M., and W. Doerfler. 1997. DNA methylation in mammalian genomes: promoter activity and genetic imprinting, p. 435-446. In R. Dulbecco (ed.), Encyclopedia of human biology, vol. 3. Academic Press, San Diego, CA.
    • (1997) Encyclopedia of human biology , vol.3 , pp. 435-446
    • Munnes, M.1    Doerfler, W.2
  • 26
    • 0028852344 scopus 로고
    • The initiation of de novo methylation of foreign DNA integrated into a mammalian genome is not exclusively targeted by nucleotide sequence
    • Orend, G., M. Knoblauch, C. Kämmer, S. T. Tjia, B. Schmitz, A. Linkwitz, G. Meyer zu Altenschildesche, J. Maas, and W. Doerfler. 1995. The initiation of de novo methylation of foreign DNA integrated into a mammalian genome is not exclusively targeted by nucleotide sequence. J. Virol. 69:1226-1242.
    • (1995) J. Virol , vol.69 , pp. 1226-1242
    • Orend, G.1    Knoblauch, M.2    Kämmer, C.3    Tjia, S.T.4    Schmitz, B.5    Linkwitz, A.6    Meyer zu Altenschildesche, G.7    Maas, J.8    Doerfler, W.9
  • 27
    • 0028832821 scopus 로고
    • Selective loss of unmethylated segments of integrated Ad12 genomes in revertants of the adenovirus type 12-transformed cell line T637
    • Orend, G., M. Knoblauch, and W. Doerfler. 1995. Selective loss of unmethylated segments of integrated Ad12 genomes in revertants of the adenovirus type 12-transformed cell line T637. Virus Res. 38:261-267.
    • (1995) Virus Res , vol.38 , pp. 261-267
    • Orend, G.1    Knoblauch, M.2    Doerfler, W.3
  • 28
    • 0017176830 scopus 로고
    • Transcription of the genome of adenovirus type 12. III. Maps of stable RNA from productively infected human cells and abortively infected and transformed hamster cells
    • Ortin, J., K. H. Scheidtmann, R. Greenberg, M. Westphal, and W. Doerfler. 1976. Transcription of the genome of adenovirus type 12. III. Maps of stable RNA from productively infected human cells and abortively infected and transformed hamster cells. J. Virol. 20:355-372.
    • (1976) J. Virol , vol.20 , pp. 355-372
    • Ortin, J.1    Scheidtmann, K.H.2    Greenberg, R.3    Westphal, M.4    Doerfler, W.5
  • 29
    • 16544376731 scopus 로고    scopus 로고
    • Transgene methylation in mice reflects copy number but not expression level
    • Pena, R. N., J. Webster, S. Kwan, J. Korbel, and B. A. Whitelaw. 2004. Transgene methylation in mice reflects copy number but not expression level. Mol. Biotechnol. 26:215-220.
    • (2004) Mol. Biotechnol , vol.26 , pp. 215-220
    • Pena, R.N.1    Webster, J.2    Kwan, S.3    Korbel, J.4    Whitelaw, B.A.5
  • 30
    • 0034625064 scopus 로고    scopus 로고
    • Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a
    • Ramsahoye, B. H., D. Biniszkiewicz, F. Lyko, A. P. Bird, and R. Jaenisch. 2000. Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a. Proc. Natl. Acad. Sci. USA 97:5237-5242.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 5237-5242
    • Ramsahoye, B.H.1    Biniszkiewicz, D.2    Lyko, F.3    Bird, A.P.4    Jaenisch, R.5
  • 32
    • 0345435970 scopus 로고    scopus 로고
    • Insertion of foreign DNA into an established mammalian genome can alter the methylation of cellular DNA sequences
    • Remus, R., C. Kämmer, H. Heller, B. Schmitz, G. Schell, and W. Doerfler. 1999. Insertion of foreign DNA into an established mammalian genome can alter the methylation of cellular DNA sequences. J. Virol. 73:1010-1022.
    • (1999) J. Virol , vol.73 , pp. 1010-1022
    • Remus, R.1    Kämmer, C.2    Heller, H.3    Schmitz, B.4    Schell, G.5    Doerfler, W.6
  • 34
    • 0019401156 scopus 로고
    • Expression of viral DNA in adenovirus type 12-transformed cells, in tumor cells, and in revertants
    • Schirm, S., and W. Doerfler. 1981. Expression of viral DNA in adenovirus type 12-transformed cells, in tumor cells, and in revertants. J. Virol. 39:694-702.
    • (1981) J. Virol , vol.39 , pp. 694-702
    • Schirm, S.1    Doerfler, W.2
  • 35
    • 1842332128 scopus 로고    scopus 로고
    • Adenovirus type 12 DNA firmly associates with mammalian chromosomes early after virus infection or after DNA transfer by the addition of DNA to the cell culture medium
    • Schröer, J., I. Hölker, and W. Doerfler. 1997. Adenovirus type 12 DNA firmly associates with mammalian chromosomes early after virus infection or after DNA transfer by the addition of DNA to the cell culture medium. J. Virol. 71:7923-7932.
    • (1997) J. Virol , vol.71 , pp. 7923-7932
    • Schröer, J.1    Hölker, I.2    Doerfler, W.3
  • 36
    • 0021282344 scopus 로고
    • Expression of the E4 gene is required for establishment of soft-agar colony-forming rat cell lines transformed by the adenovirus 12 E1 gene
    • Shiroki, K., S. Hashimoto, I. Saito, Y. Fukui, H. Kato, and H. Shimojo. 1984. Expression of the E4 gene is required for establishment of soft-agar colony-forming rat cell lines transformed by the adenovirus 12 E1 gene. J. Virol. 50:854-863.
    • (1984) J. Virol , vol.50 , pp. 854-863
    • Shiroki, K.1    Hashimoto, S.2    Saito, I.3    Fukui, Y.4    Kato, H.5    Shimojo, H.6
  • 37
    • 0016700864 scopus 로고
    • Detection of specific sequences among DNA fragments separated by electrophoresis
    • Southern, E. M. 1975. Detection of specific sequences among DNA fragments separated by electrophoresis. J. Mol. Biol. 98:503-517.
    • (1975) J. Mol. Biol , vol.98 , pp. 503-517
    • Southern, E.M.1
  • 38
    • 0028156736 scopus 로고
    • Nucleotide sequence of human adenovirus type 12 DNA: Comparative functional analysis
    • Sprengel, J., B. Schmitz, D. Heuss-Neitzel, C. Zock, and W. Doerfler. 1994. Nucleotide sequence of human adenovirus type 12 DNA: comparative functional analysis. J. Virol. 68:379-389.
    • (1994) J. Virol , vol.68 , pp. 379-389
    • Sprengel, J.1    Schmitz, B.2    Heuss-Neitzel, D.3    Zock, C.4    Doerfler, W.5
  • 39
    • 0018974390 scopus 로고
    • Integration sites of adenovirus type 12 DNA in transformed hamster cells and hamster tumor cells
    • Stabel, S., W. Doerfler, and R. R. Friis. 1980. Integration sites of adenovirus type 12 DNA in transformed hamster cells and hamster tumor cells. J. Virol. 36:22-40.
    • (1980) J. Virol , vol.36 , pp. 22-40
    • Stabel, S.1    Doerfler, W.2    Friis, R.R.3
  • 40
    • 0000002448 scopus 로고
    • Syrian hamster fibroblast cell line BHK21 and its derivatives
    • Stoker, M., and I. Macpherson. 1964. Syrian hamster fibroblast cell line BHK21 and its derivatives. Nature 203:1355-1357.
    • (1964) Nature , vol.203 , pp. 1355-1357
    • Stoker, M.1    Macpherson, I.2
  • 41
    • 0014214663 scopus 로고
    • Adenovirus tumorigenesis: Role of the viral genome in determining tumor morphology
    • Strohl, W. A., A. S. Rabson, and H. Rouse. 1967. Adenovirus tumorigenesis: role of the viral genome in determining tumor morphology. Science 156:1631-1633.
    • (1967) Science , vol.156 , pp. 1631-1633
    • Strohl, W.A.1    Rabson, A.S.2    Rouse, H.3
  • 42
    • 0018250796 scopus 로고
    • Patterns of integration of viral DNA sequences in the genomes of adenovirus type 12-transformed hamster cells
    • Sutter, D., M. Westphal, and W. Doerfler. 1978. Patterns of integration of viral DNA sequences in the genomes of adenovirus type 12-transformed hamster cells. Cell 14:569-585.
    • (1978) Cell , vol.14 , pp. 569-585
    • Sutter, D.1    Westphal, M.2    Doerfler, W.3
  • 43
    • 0018837047 scopus 로고
    • Methylation of integrated adenovirus type 12 DNA sequences in transformed cells is inversely correlated with viral gene expression
    • Sutter, D., and W. Doerfler. 1980. Methylation of integrated adenovirus type 12 DNA sequences in transformed cells is inversely correlated with viral gene expression. Proc. Natl. Acad. Sci. USA 77:253-256.
    • (1980) Proc. Natl. Acad. Sci. USA , vol.77 , pp. 253-256
    • Sutter, D.1    Doerfler, W.2
  • 44
    • 0018645066 scopus 로고
    • Sequence of inverted terminal repetitions from different adenoviruses: Demonstration of conserved sequences and homology between SA7 termini and SV40 DNA
    • Tolun, A., P. Alestrom, and U. Pettersson. 1979. Sequence of inverted terminal repetitions from different adenoviruses: demonstration of conserved sequences and homology between SA7 termini and SV40 DNA. Cell 17:705-713.
    • (1979) Cell , vol.17 , pp. 705-713
    • Tolun, A.1    Alestrom, P.2    Pettersson, U.3
  • 45
    • 0019136561 scopus 로고
    • DNA methylation and viral gene expression in adenovirus-transformed and -infected cells
    • Vardimon, L., R. Neumann, I. Kuhlmann, D. Sutter, and W. Doerfler. 1980. DNA methylation and viral gene expression in adenovirus-transformed and -infected cells. Nucleic Acids Res. 8:2461-2473.
    • (1980) Nucleic Acids Res , vol.8 , pp. 2461-2473
    • Vardimon, L.1    Neumann, R.2    Kuhlmann, I.3    Sutter, D.4    Doerfler, W.5
  • 46
    • 0030697141 scopus 로고    scopus 로고
    • Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA
    • Warnecke, P. M., C. Stirzaker, J. R. Melki, D. S. Millar, C. L. Paul, and S. J. Clark. 1997. Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA. Nucleic Acids Res. 25:4422-4426.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4422-4426
    • Warnecke, P.M.1    Stirzaker, C.2    Melki, J.R.3    Millar, D.S.4    Paul, C.L.5    Clark, S.J.6
  • 48
    • 33646494210 scopus 로고    scopus 로고
    • Functions of the adenovirus E4 proteins and their impact on viral vectors
    • Weitzman, M. D. 2005. Functions of the adenovirus E4 proteins and their impact on viral vectors. Front. Biosci. 10:1106-1117.
    • (2005) Front. Biosci , vol.10 , pp. 1106-1117
    • Weitzman, M.D.1
  • 49
    • 27944462290 scopus 로고    scopus 로고
    • Inactivating intracellular antiviral responses during adenovirus infection
    • Weitzman, M. D., and D. A. Ornelles. 2005. Inactivating intracellular antiviral responses during adenovirus infection. Oncogene 24:7686-7696.
    • (2005) Oncogene , vol.24 , pp. 7686-7696
    • Weitzman, M.D.1    Ornelles, D.A.2
  • 50
    • 0030840954 scopus 로고    scopus 로고
    • Cytosine methylation and the ecology of intragenomic parasites
    • Yoder, J. A., C. P. Walsh, and T. H. Bestor. 1997. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13:335-340.
    • (1997) Trends Genet , vol.13 , pp. 335-340
    • Yoder, J.A.1    Walsh, C.P.2    Bestor, T.H.3


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