Comparison of full genome sequences between two hepatitis B virus strains with or without preC mutation (A1896) from a single Korean hepatocellular carcinoma patient

Journal of Microbiology and Biotechnology

Volumn 17, Issue 4, 2007, Pages 701-704

  Kim, Hong ^a   Jee, Youngmee ^b   Mun, Ho Suk ^a   Song, Byung Cheol ^c   Park, Joo Hee ^a   Hyun, Jin Won ^c   Hwang, Eung Soo ^a   Cha, Chang Yong ^a   Kook, Yoon Hoh ^a   Kim, Bum Joon ^a  

^a Seoul National University   (South Korea)

^b Korea National Institute of Health   (South Korea)

^c Jeju National University School of Medicine   (South Korea)

Author keywords

Full length genome sequence; Hepatitis B virus (HBV); Hepatocellular carcinoma (HCC); preC mutation; Quasispecies

Indexed keywords

ALANINE; GLYCINE; HEPATITIS B(E) ANTIGEN;

ADULT; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; CASE REPORT; DNA EXTRACTION; GENOTYPE; HEPATITIS B VIRUS; HUMAN; LIVER CARCINOGENESIS; LIVER CELL CARCINOMA; MALE; MOLECULAR DYNAMICS; MOLECULAR PHYLOGENY; MUTATION RATE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; STRAIN DIFFERENCE; VIRUS MUTATION; VIRUS STRAIN;

BASE SEQUENCE; CARCINOMA, HEPATOCELLULAR; GENOME, VIRAL; HEPATITIS B E ANTIGENS; HEPATITIS B VIRUS; HUMANS; LIVER NEOPLASMS; MUTATION; PROMOTER REGIONS (GENETICS);

HEPATITIS B VIRUS;

EID: 34248353146     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: None     Document Type: Article

References (22)

1. Baptista, M., A. Kramvis, and M. C. Kew. 1999. High prevalence of 1762(T) 1764(A) mutations in the basic core promoter of hepatitis B virus isolated from black Africans with hepatocellular carcinoma compared with asymptomatic carriers. Hepatology 29: 946-953.
2. Cane, P. A., D. Mutimer, D. Ratcliffe, P. Cook, G. Beards, E. Elias, and D. Pillay. 1999. Analysis of hepatitis B virus quasispecies changes during emergence and reversion of lamivudine resistance in liver transplantation. Antivir. Ther. 4: 7-14.
3. Cho, S. J., K. M. Cho, E. C. Shin, W. J. Lim, S. Y. Hong, B. R. Choi, J. M. Kang, S. M. Lee, Y. H. Kim, H. Kim, and H. D. Yun. 2006. 16S rDNA analysis of bacterial diversity in three fractions of cow rumen. J. Microbiol. Biotechnol. 16: 92-101.
4. Gunther, S., L. Fischer, I. Pult, M. Sterneck, and H. Will. 1999. Naturally occurring variants of hepatitis B virus. Adv. Virus Res. 52: 25-137.
5. Kao, J. H., P. J. Chen, M. Y. Lai, and D. S. Chen. 2003. Basal core promoter mutations of hepatitis B virus increase the risk of hepatocellular carcinoma in hepatitis B carriers. Gastroenterology 124: 327-334.
6. Kim, B. J., Y. H. Koh, J. S. Chun, C. J. Kim, S. H. Lee, M. J. Cho, J. W. Hyun, K. H. Lee, C. Y. Cha, and Y. H. Kook. 2003. Differentiation of actinomycete genera based on partial rpoB gene sequences. J. Microbiol. Biotechnol. 13: 846-852.
7. Kim, H., Y. M. Jee, B. C. Song, J. W. Hyun, H. S. Mun, H. J. Kim, E. J. Oh, J. H. Yoon, Y. J. Kim, H. S. Lee, E. S. Hwang, C. Y. Cha, Y. H. Kook, and B. J. Kim. 2007. Analysis of Hepatitis B virus quasispecies distribution in a Korean chronic patient based on the full genome sequences. J. Med. Virol. 79: 212-219.
8. Kim, H., Y. M. Jee, B. C. Song, J. W. Shin, S. H. Yang, H. S. Mun, H. J. Kim, E. J. Oh, J. H. Yoon, Y. J. Kim, H. S. Lee, E. S. Hwang, C. Y. Cha, Y. H. Kook, and B. J. Kim. 2007. Molecular epidemiology of hepatitis B virus (HBV) genotypes and serotypes in patients with chronic HBV infection in Korea. Intervirology 50: 52-57.
9. Kim, S. Y., H. S. Kang, and Y. S. Kim. 2000. Phylogenetic analysis of hepatitis B virus genome isolated from Korean patient serum. J. Microbiol. Biotechnol. 10: 823-828.
10. Kumar, S., K. Tamura, I. B. Jakobsen, and M. Nei. 2001. MEGA2: Molecular Evolutionary Genetics Analysis software, Arizona State University, Tempe, Arizona, U.S.A.
11. Kwak, J., D. H. Lee, Y. D. Park, S. B. Kim, J. S. Maeng, H. W. Oh, H. Y. Park, and K. S. Bae. 2006. Polyphasic assignment of a highly proteolytic bacterium isolated from a spider to Serratia proteamaculans. J. Microbiol. Biotechnol. 16: 1537-1543.
12. Lee, D. H., J. H. Kim, J. J. Nam, H. R. Kim, and H. R. Shin. 2002. Epidemiological findings of hepatitis B infection based on 1998 National Health and Nutrition Survey in Korea. J. Korean Med. Sci. 17: 457-462.
13. Lee, W. M. 1997. Hepatitis B virus infection. N. Engl. J. Med. 337: 1733-1745.
14. Locarnini, S., J. McMillan, and A. Bartholomeusz. 2003. The hepatitis B virus and common mutants. Semin Liver Dis. 23: 5-20.
15. Odgerel, Z., K. B. Nho, J. Y. Moon, S. H. Kee, K. S. Park, K. J. Song, L. J. Baek, J. E. Yeon, K. S. Byun, C. H. Lee, and J. W. Song. 2003. Complete genome sequence and phylogenetic analysis of hepatitis B virus (HBV) isolates from patients with chronic HBV infection in Korea. J. Med. Virol. 71: 499-503.
16. Pumpens, P., E. Grens, and M. Nassal. 2002. Molecular epidemiology and immunology of hepatitis B virus infection - an update. Intervirology 45: 218-232.
17. Rossner, M. T. 1992. Review: Hepatitis B virus X-gene product: A promiscuous transcriptional activator. J. Med. Virol. 36: 101-117.
18. Song, B. C., H. Kim, S. H. Kim, C. Y. Cha, Y. H. Kook, and B. J. Kim. 2005. Comparison of full length sequences of hepatitis B virus isolates in hepatocellular carcinoma patients and asymptomatic carriers of Korea. J. Med. Virol. 75: 13-19.
19. Song, B. C., S. H. Kim, H. Kim, Y. H. Ying, H. J. Kim, Y. J. Kim, J. H. Yoon, H. S. Lee, C. Y. Cha, Y. H. Kook, and B. J. Kim. 2005. Prevalence of naturally occurring surface antigen variants of hepatitis B virus in Korean patients infected chronically. J. Med. Virol. 76: 194-202.
20. Usuda, S., H. Okamoto, H. Iwanari, K. Baba, F. Tsuda, Y. Miyakawa, and M. Mayumi. 1999. Serological detection of hepatitis B virus genotypes by ELISA with monoclonal antibodies to type-specific epitopes in the preS2-region product. J. Virol. Methods 80: 97-112.
21. Yeo, S. H., H. J. Kim, J. H. Yoon, H. S. Kim, Y. I. Hwang, and S. C. Lee. 2006. Characterization of antioxidant-producing Alteromonas macleodii HJ-14 isolated from seawater. J. Microbiol. Biotechnol. 16: 731-739.
22. Yoo, B. C., J. W. Park, H. J. Kim, D. H. Lee, Y. J. Cha, and S. M. Park. 2003. Precore and core promoter mutations of hepatitis B virus and hepatitis B e antigen-negative chronic hepatitis B in Korea. J. Hepatol. 38: 98-103.