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Volumn 61, Issue 2, 2007, Pages 112-119

Genetics and stochastic simulation do mix!

Author keywords

Approximate Bayesian computation; Markov chain Monte Carlo; Population genetics; Reversible jump; Simulated tempering; Statistical genetics

Indexed keywords


EID: 34248325683     PISSN: 00031305     EISSN: None     Source Type: Journal    
DOI: 10.1198/000313007X169965     Document Type: Article
Times cited : (3)

References (44)
  • 1
    • 34248391810 scopus 로고    scopus 로고
    • Balding, D. J, Bishop, M, and Cannings, C, eds, 2nd ed, New York: Wiley
    • Balding, D. J., Bishop, M., and Cannings, C. (eds.) (2003), Handbook of Statistical Genetics (2nd ed.), New York: Wiley.
    • (2003) Handbook of Statistical Genetics
  • 2
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian Computation in Population Genetics
    • Beaumont, M. A., Zhang, W., and Balding, D. J. (2002), "Approximate Bayesian Computation in Population Genetics," Genetics, 162, 2025-2035.
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • Beaumont, M.A.1    Zhang, W.2    Balding, D.J.3
  • 7
    • 32344446687 scopus 로고
    • Understanding the Metropolis-Hastings Algorithm
    • Chib, S., and Greenberg, E. (1995), "Understanding the Metropolis-Hastings Algorithm," The American Statistician, 49, 327-335.
    • (1995) The American Statistician , vol.49 , pp. 327-335
    • Chib, S.1    Greenberg, E.2
  • 8
    • 34247248616 scopus 로고    scopus 로고
    • Mammalian Population Genetics and Genomics
    • eds. A. Ruvinsky and J. M. Graves, CAB International, pp
    • Chikhi, L., and Bruford, M. (2005), "Mammalian Population Genetics and Genomics," in Mammalian Genomics, eds. A. Ruvinsky and J. M. Graves, CAB International, pp. 539-584.
    • (2005) Mammalian Genomics , pp. 539-584
    • Chikhi, L.1    Bruford, M.2
  • 9
    • 0002047076 scopus 로고
    • Simulation Studies of Genealogies (presented paper abstract)
    • Edwards, A. W. F. (1968), "Simulation Studies of Genealogies" (presented paper abstract), Heredity, 628.
    • (1968) Heredity , pp. 628
    • Edwards, A.W.F.1
  • 10
    • 5344241252 scopus 로고    scopus 로고
    • Genetic Analysis of Complex Demographic Scenarios: Spatially Expanding Populations of the Cane Toad, bufo marinus
    • Estoup, A., Beaumont, M., Sennedot, F., Moritz, C, and Cornuet, J.-M. (2004), "Genetic Analysis of Complex Demographic Scenarios: Spatially Expanding Populations of the Cane Toad, bufo marinus," Evolution, 58, 2021-2036.
    • (2004) Evolution , vol.58 , pp. 2021-2036
    • Estoup, A.1    Beaumont, M.2    Sennedot, F.3    Moritz, C.4    Cornuet, J.-M.5
  • 11
    • 0031038941 scopus 로고    scopus 로고
    • Estimating the Age of the Common Ancestor of a Sample of DNA Sequences
    • Fu, Y.-X., and Li, W.-H. (1997), "Estimating the Age of the Common Ancestor of a Sample of DNA Sequences," Molecular Biology and Evolution, 14, 195-199.
    • (1997) Molecular Biology and Evolution , vol.14 , pp. 195-199
    • Fu, Y.-X.1    Li, W.-H.2
  • 13
    • 34248371594 scopus 로고    scopus 로고
    • Gelman, A, Carlin, J. B, Stern, H. S, and Rubin, D. B, eds, 2nd ed, Boca Raton, FL: Chapman and Hall/CRC
    • Gelman, A., Carlin, J. B., Stern, H. S., and Rubin, D. B. (eds.) (2004), Bayesian Data Analysis (2nd ed.), Boca Raton, FL: Chapman and Hall/CRC.
    • (2004) Bayesian Data Analysis
  • 15
    • 84950437936 scopus 로고
    • Annealing Markov Chain Monte Carlo With Applications to Ancestral Inference
    • Geyer, C. J., and Thompson, E. A. (1995), "Annealing Markov Chain Monte Carlo With Applications to Ancestral Inference," Journal of the American Statistical Association, 90, 909-920.
    • (1995) Journal of the American Statistical Association , vol.90 , pp. 909-920
    • Geyer, C.J.1    Thompson, E.A.2
  • 16
    • 0003860037 scopus 로고
    • Gilks, W. R, Richardson, S, and Spiegelhalter, D. J, eds, London: Chapman and Hall
    • Gilks, W. R., Richardson, S., and Spiegelhalter, D. J. (eds.) (1995), Markov Chain Monte Carlo in Practice, London: Chapman and Hall.
    • (1995) Markov Chain Monte Carlo in Practice
  • 17
    • 77956889087 scopus 로고
    • Reversible Jump MCMC Computation and Bayesian Model Determination
    • Green, P. J. (1995), "Reversible Jump MCMC Computation and Bayesian Model Determination," Biometrika, 82, 711-732.
    • (1995) Biometrika , vol.82 , pp. 711-732
    • Green, P.J.1
  • 18
    • 34248359914 scopus 로고    scopus 로고
    • _ (2001), A Primer on Markov Chain Monte Carlo, in Complex Stochastic Systems, eds. O. E. Barndorff-Nielsen, D. R. Cox, and C. Klüppelberg, Number 87 in Monographs on Statistics and Probability, Boca Raton, FL: Chapman and Hall/CRC, pp. 1-62.
    • _ (2001), "A Primer on Markov Chain Monte Carlo," in Complex Stochastic Systems, eds. O. E. Barndorff-Nielsen, D. R. Cox, and C. Klüppelberg, Number 87 in Monographs on Statistics and Probability, Boca Raton, FL: Chapman and Hall/CRC, pp. 1-62.
  • 19
    • 20444406878 scopus 로고    scopus 로고
    • Bayesian Estimation of Recent Migration Rates After a Spatial Expansion
    • Hamilton, G., Currat, M., Ray, N., Heckel, G, Beaumont, M., and Excoffler, L. (2005), "Bayesian Estimation of Recent Migration Rates After a Spatial Expansion," Genetics, 170, 409-417.
    • (2005) Genetics , vol.170 , pp. 409-417
    • Hamilton, G.1    Currat, M.2    Ray, N.3    Heckel, G.4    Beaumont, M.5    Excoffler, L.6
  • 20
    • 77956890234 scopus 로고
    • Monte Carlo Sampling Methods Using Markov Chains and Their Applications
    • Hastings, W. K. (1970), "Monte Carlo Sampling Methods Using Markov Chains and Their Applications," Biometrika, 57, 97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 21
    • 0033556955 scopus 로고    scopus 로고
    • Block Updating in Constrained Markov Chain Monte Carlo Sampling
    • Hum, M. A., Rue, H., and Sheehan, N. (1999), "Block Updating in Constrained Markov Chain Monte Carlo Sampling," Statistics and Probability Letters, 41, 353-361.
    • (1999) Statistics and Probability Letters , vol.41 , pp. 353-361
    • Hum, M.A.1    Rue, H.2    Sheehan, N.3
  • 22
    • 0033358743 scopus 로고    scopus 로고
    • Blocking Gibbs Sampling for Linkage Analysis in Large Pedigrees With Many Loops
    • Jensen, C. S., and Kong, A. (1999), "Blocking Gibbs Sampling for Linkage Analysis in Large Pedigrees With Many Loops," American Journal of Human Genetics, 65, 885-901.
    • (1999) American Journal of Human Genetics , vol.65 , pp. 885-901
    • Jensen, C.S.1    Kong, A.2
  • 23
    • 0031745091 scopus 로고    scopus 로고
    • Problems With the Determination of Non-communicating Classes for Monte Carlo Markov Chain Applications in Pedigree Analysis
    • Jensen, C. S., and Sheehan, N. A. (1998), "Problems With the Determination of Non-communicating Classes for Monte Carlo Markov Chain Applications in Pedigree Analysis," Biometrics, 54, 416-425.
    • (1998) Biometrics , vol.54 , pp. 416-425
    • Jensen, C.S.1    Sheehan, N.A.2
  • 25
    • 0034403006 scopus 로고    scopus 로고
    • p Model Sampling and Change-Point Problems
    • p Model Sampling and Change-Point Problems," Statistica Sinica, 10, 317-342.
    • (2000) Statistica Sinica , vol.10 , pp. 317-342
    • Liang, F.1    Wong, W.H.2
  • 26
    • 0029029338 scopus 로고
    • A Scheme for Constructing an Irreducible Markov Chain for Pedigree Data
    • Lin, S. (1995), "A Scheme for Constructing an Irreducible Markov Chain for Pedigree Data," Biometrics, 51, 318-322.
    • (1995) Biometrics , vol.51 , pp. 318-322
    • Lin, S.1
  • 28
    • 0346734143 scopus 로고    scopus 로고
    • Markov Chain Monte Carlo Without Likelihoods
    • Marjoram, P., Molitor, J., Plagnol, V., and Tavaré, S. (2003), "Markov Chain Monte Carlo Without Likelihoods," PNAS, 100, 15324-15328.
    • (2003) PNAS , vol.100 , pp. 15324-15328
    • Marjoram, P.1    Molitor, J.2    Plagnol, V.3    Tavaré, S.4
  • 30
    • 0039911241 scopus 로고    scopus 로고
    • Perfect Simulation for Sample-Based Inference
    • Aalborg University
    • Møller, J., and Nicholls, G. K. (1999), "Perfect Simulation for Sample-Based Inference," technical report, Aalborg University.
    • (1999) technical report
    • Møller, J.1    Nicholls, G.K.2
  • 32
    • 0005193926 scopus 로고    scopus 로고
    • Exact Sampling with Coupled Markov Chains and Applications to Statistical Mechanics
    • Propp, J. G., and Wilson, D. B. (1996), "Exact Sampling with Coupled Markov Chains and Applications to Statistical Mechanics," Random Structures and Algorithms, 9, 223-252.
    • (1996) Random Structures and Algorithms , vol.9 , pp. 223-252
    • Propp, J.G.1    Wilson, D.B.2
  • 34
    • 0027205090 scopus 로고
    • On the Irreducibility of a Markov Chain Defined on a Space of Genotypic Configurations by a Sampling Scheme
    • Sheehan, N., and Thomas, A. (1993), "On the Irreducibility of a Markov Chain Defined on a Space of Genotypic Configurations by a Sampling Scheme," Biometrics, 49, 163-175.
    • (1993) Biometrics , vol.49 , pp. 163-175
    • Sheehan, N.1    Thomas, A.2
  • 35
    • 34248390928 scopus 로고    scopus 로고
    • An Algorithm to Characterise Non-communicating Classes on Complex Geneaolgies
    • Department of Statistics, University of New South Wales
    • Sisson, S. A. (2002), "An Algorithm to Characterise Non-communicating Classes on Complex Geneaolgies," technical report, Department of Statistics, University of New South Wales.
    • (2002) technical report
    • Sisson, S.A.1
  • 36
    • 24644518085 scopus 로고    scopus 로고
    • Trans-dimensional Markov Chains: A Decade of Progress and Future Perspectives
    • _ (2005), "Trans-dimensional Markov Chains: A Decade of Progress and Future Perspectives," Journal of the American Statistical Association, 100, 1077-1089.
    • (2005) Journal of the American Statistical Association , vol.100 , pp. 1077-1089
    • Sisson, S.A.1
  • 39
    • 33746419713 scopus 로고    scopus 로고
    • Using Approximate Bayesian Computation to Estimating Tuberculosis Transmission Parameters from Genotype Data
    • Tanaka, M. M., Francis, A. R., Luciani, F., and Sisson, S. A. (2006), "Using Approximate Bayesian Computation to Estimating Tuberculosis Transmission Parameters from Genotype Data," Genetics, 173, 1511-1520.
    • (2006) Genetics , vol.173 , pp. 1511-1520
    • Tanaka, M.M.1    Francis, A.R.2    Luciani, F.3    Sisson, S.A.4
  • 40
    • 0031014291 scopus 로고    scopus 로고
    • Inferring Coalescence Times from DNA Sequence Data
    • Tavaré, S. D., Balding, D. J., Griffiths, R. C., and Donnelly, P. (1997), "Inferring Coalescence Times from DNA Sequence Data," Genetics, 145, 505-518.
    • (1997) Genetics , vol.145 , pp. 505-518
    • Tavaré, S.D.1    Balding, D.J.2    Griffiths, R.C.3    Donnelly, P.4
  • 41
    • 0003733424 scopus 로고    scopus 로고
    • Philadephia: Institute of Mathematical Sciences and the American Statistical Association
    • Thompson, E. A. (2000), Statistical Inference from Genetic Data on Pedigrees, Philadephia: Institute of Mathematical Sciences and the American Statistical Association.
    • (2000) Statistical Inference from Genetic Data on Pedigrees
    • Thompson, E.A.1
  • 42
    • 0035297748 scopus 로고    scopus 로고
    • An Tutorial on Reversible Jump MCMC With a View Toward Applications on QTL Mapping
    • Waagepetersen, R., and Sorensen, D. (2001), "An Tutorial on Reversible Jump MCMC With a View Toward Applications on QTL Mapping," International Statistical Review, 69, 49-62.
    • (2001) International Statistical Review , vol.69 , pp. 49-62
    • Waagepetersen, R.1    Sorensen, D.2
  • 43
    • 0031827528 scopus 로고    scopus 로고
    • Inference of Population History Using a Likelihood Approach
    • Weiss, G., and von Haeseler, A. (1998), "Inference of Population History Using a Likelihood Approach," Genetics, 149, 1539-1546.
    • (1998) Genetics , vol.149 , pp. 1539-1546
    • Weiss, G.1    von Haeseler, A.2
  • 44
    • 0001379453 scopus 로고
    • An Approximate Method of Calculating Coefficients of Inbreeding and Relationship from Livestock Pedigrees
    • Wright, S., and McPhee, H. C. (1925), "An Approximate Method of Calculating Coefficients of Inbreeding and Relationship from Livestock Pedigrees," Journal of Agricultural Research, 31, 377-383.
    • (1925) Journal of Agricultural Research , vol.31 , pp. 377-383
    • Wright, S.1    McPhee, H.C.2


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