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Volumn 40, Issue 5, 2007, Pages 615-619

Pipeline for macro- and microarray analyses

Author keywords

BioArray Software Environment; Intensity dependent selection of expression ratios; Macroarray; Microarray; Normalization; Pipeline

Indexed keywords

ARTICLE; BIOINFORMATICS; COLD EXPOSURE; COLD TOLERANCE; COMPUTER INTERFACE; COMPUTER PROGRAM; DNA MICROARRAY; DOWN REGULATION; EXPRESSED SEQUENCE TAG; GENE CONTROL; GENE EXPRESSION; GENE IDENTIFICATION; INFORMATION PROCESSING; INTERNET; NONHUMAN; PLANT GENETICS; SUGARCANE; UPREGULATION;

EID: 34248219056     PISSN: 0100879X     EISSN: 1414431X     Source Type: Journal    
DOI: 10.1590/s0100-879x2006005000089     Document Type: Article
Times cited : (4)

References (14)
  • 1
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M, Shalon D, Davis RW, Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995; 270: 467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 2
    • 0032103217 scopus 로고    scopus 로고
    • Differential gene expression in Arabidopsis monitored using cDNA arrays
    • Desprez T, Amselem J, Caboche M, Hofte H. Differential gene expression in Arabidopsis monitored using cDNA arrays. Plant J 1998; 14: 643-652.
    • (1998) Plant J , vol.14 , pp. 643-652
    • Desprez, T.1    Amselem, J.2    Caboche, M.3    Hofte, H.4
  • 3
    • 0034730124 scopus 로고    scopus 로고
    • Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
    • Lee ML, Kuo FC, Whitmore GA, Sklar J. Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc Natl Acad Sci U S A. 2000; 97: 9834-9839.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 9834-9839
    • Lee, M.L.1    Kuo, F.C.2    Whitmore, G.A.3    Sklar, J.4
  • 4
    • 0033748095 scopus 로고    scopus 로고
    • Fundamentals of DNA hybridization arrays for gene expression analysis
    • Freeman WM, Robertson DJ, Vrana KE. Fundamentals of DNA hybridization arrays for gene expression analysis. Biotechniques 2000; 29: 1042-1055.
    • (2000) Biotechniques , vol.29 , pp. 1042-1055
    • Freeman, W.M.1    Robertson, D.J.2    Vrana, K.E.3
  • 5
    • 0037099005 scopus 로고    scopus 로고
    • Saal LH, Troein C, Vallon-Christersson J, Gruvberger S, Borg A, Peterson C. BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data. Genome Biol 2002; 3: SOFTWARE0003.
    • Saal LH, Troein C, Vallon-Christersson J, Gruvberger S, Borg A, Peterson C. BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data. Genome Biol 2002; 3: SOFTWARE0003.
  • 6
    • 0037336331 scopus 로고    scopus 로고
    • Open source software for the analysis of microarray data
    • Dudoit S, Gentleman RC, Quackenbush J. Open source software for the analysis of microarray data. Biotechniques 2003; Suppl: 45-51.
    • (2003) Biotechniques , Issue.SUPPL. , pp. 45-51
    • Dudoit, S.1    Gentleman, R.C.2    Quackenbush, J.3
  • 7
    • 84948989616 scopus 로고    scopus 로고
    • Accessed July 11, 2006
    • The Source for Perl. http://www.perl.com. Accessed July 11, 2006.
    • The Source for Perl
  • 8
    • 34248166390 scopus 로고    scopus 로고
    • The R Project for Statistical Computing, Accessed July 11, 2006
    • The R Project for Statistical Computing. http://www.r-project.org. Accessed July 11, 2006.
  • 9
    • 28944454736 scopus 로고    scopus 로고
    • ISER: Selection of differentially expressed genes from DNA array data by non-linear data transformations and local fitting
    • Drummond RD, Pinheiro A, Rocha CS, Menossi M. ISER: selection of differentially expressed genes from DNA array data by non-linear data transformations and local fitting. Bioinformatics 2005; 21: 4427-4429.
    • (2005) Bioinformatics , vol.21 , pp. 4427-4429
    • Drummond, R.D.1    Pinheiro, A.2    Rocha, C.S.3    Menossi, M.4
  • 10
    • 0042967411 scopus 로고    scopus 로고
    • RNA expression profiles and data mining of sugarcane response to low temperature
    • Nogueira FT, de Rosa VE Jr, Menossi M, Ulian EC, Arruda P. RNA expression profiles and data mining of sugarcane response to low temperature. Plant Physiol 2003; 132: 1811-1824.
    • (2003) Plant Physiol , vol.132 , pp. 1811-1824
    • Nogueira, F.T.1    de Rosa Jr, V.E.2    Menossi, M.3    Ulian, E.C.4    Arruda, P.5
  • 11
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002; 30: 207-210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 13
    • 0033027794 scopus 로고    scopus 로고
    • Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
    • Tamayo P, Slonim D, Mesirov J, Zhu Q, Kitareewan S, Dmitrovsky E, et al. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc Natl Acad Sci U S A 1999; 96: 2907-2912.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 2907-2912
    • Tamayo, P.1    Slonim, D.2    Mesirov, J.3    Zhu, Q.4    Kitareewan, S.5    Dmitrovsky, E.6
  • 14
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 2001; 98: 5116-5121.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.