Paenibacillus zanthoxyli sp. nov., a novel nitrogen-fixing species isolated from the rhizosphere of Zanthoxylum simulans

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 4, 2007, Pages 873-877

  Ma, Yuchao ^a   Zhang, Jian ^b   Chen, Sanfeng ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b QIQIHAR UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ACID; ASPARTIC ACID; BACTERIAL DNA; CARBOHYDRATE; CITRATE SODIUM; CYTOSINE; FATTY ACID; FRUCTOSE; GLUCOSE; GLYCEROL; GLYCINE; GUANINE; LACTOSE; MALTOSE; NITROGEN; RNA 16S; SORBITOL; SUCCINIC ACID; SUCROSE; XYLOSE;

ARTICLE; BACILLUS; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; DNA CONTENT; DNA DNA HYBRIDIZATION; GENE CLUSTER; NEW SPECIES; NITROGEN FIXATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PAENIBACILLUS; PAENIBACILLUS DURUS; PAENIBACILLUS STELLIFER; PAENIBACILLUS ZANTHOXYLI; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RHIZOSPHERE; RNA SEQUENCE; SEQUENCE HOMOLOGY; SOIL; ZANTHOXYLUM; ZANTHOXYLUM SIMULANS;

DNA, BACTERIAL; DNA, RIBOSOMAL; GRAM-POSITIVE ENDOSPORE-FORMING RODS; MOLECULAR SEQUENCE DATA; NITROGEN FIXATION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY; ZANTHOXYLUM;

PAENIBACILLUS; PAENIBACILLUS DURUS; PAENIBACILLUS STELLIFER; ZANTHOXYLUM SIMULANS;

EID: 34248149464     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64652-0     Document Type: Article

References (24)

1. Achouak, W., Normand, P. & Heulin, T. (1999). Comparative phylogeny of rrs and nifH genes in the Bacillaceae. Int J Syst Bacteriol 49, 961-967.
2. Ash, C., Priest, F. G. & Collins, M. D. (1993). Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 64, 253-260.
3. Berge, O., Guinebretière, M. H., Achouak, W., Normand, P. & Heulin, T. (2002). Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food. Int J Syst Evol Microbiol 52, 607-616.
4. AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1105-1139. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
5. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
6. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
7. Ding, Y., Wang, J., Liu, Y. & Chen, S. (2005). Isolation and identification of nitrogen-fixing bacilli from plant rhizospheres in Beijing region. J Appl Microbiol 99, 1271-1281.
8. Elo, S., Suominen, I., Kämpfer, P., Juhanoja, J., Salkinoja-Salonen, M. & Haahtela, K. (2001). Paenibacillus borealis sp. nov., a nitrogen-fixing species isolated from spruce forest humus in Finland. Int J Syst Evol Microbiol 51, 535-545.
9. Grau, F. H. & Wilson, P. W. (1962). Physiology of nitrogen-fixation by Bacillus polymyxa. J Bacteriol 83, 490-496.
10. Komagata, K. & Suzuki, K. (1987). Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
11. Priest, F. G., Goodfellow, M. & Todd, C. (1981). The genus Bacillus: A numerical analysis. In The Aerobic Endospore-forming Bacteria Classification and Identification, pp. 91-103. Edited by R. C. W. Berkeley & M. Goodfellow. London: Academic Press.
12. Rhodes-Roberts, M. (1981). The taxonomy of some nitrogen-fixing Bacillus species with special reference to nitrogen fixation. In The Aerobic Endospore-Forming Bacteria. Classification and Identification, pp. 315-335. Edited by R. C. W. Berkeley & M. Goodfellow. London: Academic Press.
13. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
14. Seldin, L., van Elsas, J. D. & Penido, E. G. C. (1984). Bacillus azotofixans sp. nov., a nitrogen-fixing species from Brazilian soils and grass roots. Int J Syst Bacteriol 34, 451-456.
15. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K. (1997). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47, 289-298.
16. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
17. Slepecky, E. B. & Hemphill, E. (1991). The genus Bacillus nonmedical. In The Prokaryotes, vol. 2, pp. 1663-1696. Edited by A. Balows, H. G. Truper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
18. Suominen, I., Spröer, C., Kämpfer, P., Rainey, F. A., Lounatmaa, K. & Salkinoja-Salonen, M. S. (2003). Paenibacillus stellifer sp. nov., a cyclodextrin-producing species isolated from paperboard. Int J Syst Evol Microbiol 53, 1369-1374.
19. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
20. Van der Peer, Y. & de Wachter, R. (1994). TREECON for Windows: A software package for construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10, 569-570.
21. von der Weid, I., Duarte, G. F., van Elsas, J. D. & Seldin, L. (2002) Paenibacillus brasilensis sp. nov., a novel nitrogen-fixing species isolated from the maize rhizosphere in Brazil. Int J Syst Evol Microbiol 52, 2147-2153.
22. Witz, D. F., Detroy, R. W. & Wilson, P. W. (1967). Nitrogen fixation by growing cells and cell-free extracts of the Bacillaceae. Arch Mikrobiol 55, 369-381.
23. Yanagi, M. & Yamasato, K. (1993). Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer. FEMS Microbiol Lett 107, 115-120.
24. Yoon, J. H., Oh, H. M., Yoon, B. D., Kang, K. H. & Park, Y. H. (2003) Paenibacillus kribbensis sp. nov. and Paenibacillus terrae sp. nov., bioflocculants for efficient harvesting of algal cells. Int J Syst Evol Microbiol 53, 295-301.