Detecting multiple levels of effect during survey sampling using a Bayesian approach: Point prevalence estimates of a hantavirus in hispid cotton rats (Sigmodon hispidus)

Ecological Modelling

Volumn 205, Issue 1-2, 2007, Pages 29-38

  Walsh, Andrew S ^a   Louis, Thomas A ^a   Glass, Gregory E ^a  

^a JOHNS HOPKINS BLOOMBERG SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

Bayesian modeling; Black Creek Canal Virus; Conditional autoregressive model; Cotton rat; Hantavirus; Sigmodon hispidus

Indexed keywords

MAMMALS; MATHEMATICAL MODELS; MEDICAL PROBLEMS; SAMPLING; VEGETATION; VIRUSES;

BAYESIAN MODELING; BLACK CREEK CANAL VIRUS; CONDITIONAL AUTOREGRESSIVE MODEL; COTTON RAT; HANTAVIRUS; SIGMODON HISPIDUS;

BAYESIAN NETWORKS;

BAYESIAN ANALYSIS; DETECTION METHOD; ECOLOGICAL MODELING; ENVIRONMENTAL CONDITIONS; ESTIMATION METHOD; FIELD SURVEY; LANDSCAPE STRUCTURE; REMOTE SENSING; RODENT; SAMPLING; SPATIAL DISTRIBUTION; VEGETATION TYPE; VIRUS;

BLACK CREEK; INDIANA; NORTH AMERICA; UNITED STATES;

ANIMALIA; BLACK CREEK CANAL VIRUS; HANTAVIRUS; RATTUS; SIGMODON; SIGMODON HISPIDUS;

EID: 34248147136     PISSN: 03043800     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecolmodel.2007.01.016     Document Type: Article

References (43)

1. Andreadis T.G., Anderson J.F., and Vossbrinck C.R. Mosquito surveillance for West Nile virus in Connecticut, 2000: isolation from Culex pipiens, Cx. restuans, Cx. salinarius, and Culiseta melanura. Emerg. Infect. Dis. 7 (2001) 670-674
2. Austin M.P. Spatial prediction of species distribution: an interface between ecological theory and statistical modeling. Ecol. Model. 157 (2002) 101-118
3. Banerjee S., Carlin B.P., and Gelfand A.E. Hierarchical Modeling and Analysis for Spatial Data (2004), Chapman and Hall, Boca Raton
4. Bernard K.A., Maffei J.G., Jones S.A., Kauffman E.B., Ebel G.D., Dupuis II A.P., Ngo K.A., Nicholas D.C., Young D.M., Shi P.-Y., Kulasekera V.L., Eidson M., White D.J., Stone W.B., Team N.S.W.N.V.S., and Kramer L.D. West Nile Virus infections in birds and mosquitoes, New York State, 2000. Emerg. Infect. Dis. 7 (2001) 679-685
5. Besag J., and Kooperberg C. On conditional and intrinsic autoregressions. Biometrika 82 (1995) 733-746
6. Betts M.G., Diamond A.W., Forbes G.J., Villard M.-A.., and Gunn J.S. The importance of spatial autocorrelation, extent and resolution in predicting forest bird occurrence. Ecol. Model. 191 (2006) 197-224
7. Boone J.D., McGwire K.C., Otteson E.W., DeBaca R.S., Kuhn E.A., Villard P., Brussard P.F., and St. Jeor S.C. Remote sensing and geographic information systems: charting Sin Nombre Virus infections in deer mice. Emerg. Infect. Dis. 6 (2000) 248-258
8. Boone J.D., Otteson E.W., McGwire K.C., Villard P., Rowe J.E., and St. Jeor S.C. Ecology and demographics of hantavirus infections in rodent populations in the Walker River Basin of Nevada and California. Am. J. Trop. Med. Hygiene 59 (1998) 445-451
9. Bunikis J., Tsao J., Luke C.J., Luna M.G., Fish D., and Barbour A.G. Borrelia burgdorferi infection in a natural population of Peromyscus Leucopus mice: a longitudinal study in an area where Lyme Borreliosis is highly endemic. J. Infect. Dis. 189 (2004) 1515-1523
10. Bunnell J.E., Price S.D., Das A., Shields T.M., and Glass G.E. Geographic Information Systems and spatial analysis of adult Ixodes scapularis (Acari: Ixodidae) in the Middle Atlantic Region of the U.S.A. J. Med. Entomol. 40 (2003) 570-576
11. Calisher C.H., Mills J.N., Sweeney W.P., Choate J.R., Sharp D.E., Canestorp K.M., and Beaty B.J. Do unusual site-specific population dynamics of rodent reservoirs provide clues to the natural history of hantaviruses?. J. Wildlife Dis. 37 (2001) 280-288
12. Campbell M.T., and Slade N.A. Effect of mass on seasonal survivorship of northern cotton rats. J. Mammal. 74 (1993) 971-981
13. Carlin B.P., and Louis T.A. Bayes and Empirical Bayes Methods for Data Analysis. 2nd ed. (2000), Chapman and Hall, Boca Raton
14. CDC. Newly identified hantavirus-Florida. Morbid. Mortal. Wkly. Rep. 43 (1994) 99-105
15. Childs J.E., Korch G.W., Glass G.E., LeDuc J.W., and Shah K.V. Epizootiology of Hantavirus infections in Baltimore: isolation of a virus from Norway rats, and characteristics of infected rat populations. Am. J. Epidemiol. 126 (1987) 55-68
16. Childs J.E., Ksiazek T.G., Spiropoulou C.F., Krebs J.W., Morzunov S., Maupin G.O., Rollin P.E., Sarisky J., and Enscore R.E. Serologic and genetic identification of Peromyscus maniculatus as the primary rodent reservoir for a new hantavirus in the southwestern United States. J. Infect. Dis. 169 (1994) 1271-1280
17. de Frutos A., Olea P.P., and Vera R. Analyzing and modelling spatial distribution of summering lesser kestrel: the role of spatial autocorrelation. Ecol. Model. 200 (2007) 33-44
18. Dister S.W., Fish D., Bros S.M., Frank D.H., and Wood B.I. Landscape characterization of peridomestic risk for Lyme disease using satellite imagery. Am. J. Trop. Med. Hygiene 57 (1997) 687-692
19. Douglass R.J., Wilson T., Semmens W.J., Zanto S.N., Bond C.W., Van Horn R.C., and Mills J.N. Longitudinal studies of Sin Nombre Virus in deer mouse-dominated ecosystems of Montana. Am. J. Trop. Med. Hygiene 65 (2001) 33-41
20. Escutenaire S., Chalon P., De Jaegere F., Karelle-Bui L., Mees G., Brochier B., Rozenfeld F., and Pastoret P.-P. Behavioral, physiologic, and habitat influences on the dynamics of Puumala virus infection in bank voles (Clethrionomys glareolus). Emerg. Infect. Dis. 8 (2002) 930-936
21. Glass G.E., Cheek J.E., Patz J.A., Shields T.M., Doyle T.J., Thoroughman D.A., Hunt D.K., Enscore R.E., Gage K.L., Irland C., Peters C.J., and Bryan R. Using remotely sensed data to identify areas of risk for Hantavirus pulmonary syndrome. Emerg. Infect. Dis. 6 (2000) 238-247
22. Glass G.E., Livingstone W., Mills J.N., Hlady W.G., Fine J.B., Biggler W., Coke T., Frazier D., Atherley S., Rollin P.E., Ksiazek T.G., Peters C.J., and Childs J.E. Black Creek Canal virus infection in Sigmodon hispidus in Southern Florida. Am. J. Trop. Med. Hygiene 59 (1998) 699-703
23. Goertz J.W. The influence of habitat quality upon density of cotton rat populations. Ecol. Monogr. 34 (1964) 359-381
24. Hastie T.J., and Tibshirani R.J. Generalized Additive Models (1990), Chapman and Hall, New York
25. Hinson E.R., Shone S.M., Zink M.C., Glass G.E., and Klein S.L. Wounding: the primary mode of Seoul Virus transmission among male Norway rats. Am. J. Trop. Med. Hygiene 70 (2004) 310-317
26. Keitt T.H., Bjørnstad O.N., Dixon P.M., and Citron-Pousty S. Accounting for spatial pattern when modeling organism-environment interactions. Ecography 25 (2002) 616-625
27. Khan A.S., Spiropoulou C.F., Morzunov S., Zaki S.R., Kohn M.A., Nawas S.R., McFarland L., and Nichol S.T. Fatal illness associated with a new hantavirus in Louisiana. J. Med. Virol. 46 (1995) 281-286
28. Kincaid W.B., and Cameron G.N. Interactions of cotton rats with a patchy environment: dietary responses and habitat selection. Ecology 66 (1985) 1769-1783
29. Kincaid W.B., Cameron G.N., and Carnes B.A. Patterns of habitat utilization in sympatric rodents on the Texas coastal prairie. Ecology 64 (1983) 1471-1480
30. Kitron U., and Kazmierczak J.J. Spatial analysis of the distribution of Lyme disease in Wisconsin. Am. J. Epidemiol. 145 (1997) 558-566
31. MapInfo Corporation, 1985. MapInfo Professional.
32. Mills J.N., and Childs J.E. Ecologic studies of rodent reservoirs: their relevance for human health. Emerg. Infect. Dis. 4 (1998) 529-537
33. Mills J.N., Ksiazek T.G., Ellis B.A., Rollin P.E., Nichol S.T., Yates T.L., Gannon W.L., Levy C.E., Engelthaler D.M., Davis T., Tanda D.T., Frampton J.W., Nichols C.R., Peters C.J., and Childs J.E. Patterns of association with host and habitat: antibody reactive with Sin Nombre virus in small mammals in the major biotic communities of the southwestern United States. Am. J. Trop. Med. Hygiene 56 (1997) 273-284
34. Nichol S.T., Spiropoulou C.F., Morzunov S., Rollin P.E., Ksiazek T.G., Feldmann H., Sanchez A., Childs J., Zaki S., and Peters C.J. Genetic identification of a hantavirus associated with an outbreak of acute respiratory illness. Science 262 (1993) 914-917
35. Overmars K.P., de Koning G.H.J., and Veldkamp A. Spatial autocorrelation in multi-scale land use models. Ecol. Model. 164 (2003) 270 257
36. R Development Core Team, 2004. R: a Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. URL: http://www.R-project.org.
37. Rollin P.E., Ksiazek T.G., Elliott L.H., Ravkov E.V., Martin M.L., Morzunov S., Livingstone W., Monroe N., Glass G., Ruo S., Khan A.S., Childs J.E., Nichol S.T., and Peters C.J. Isolation of Black Creek Canal virus, a new hantavirus from Sigmodon hispidus in Florida. J. Med. Virol. 46 (1995) 35-39
38. Root J.J., Calisher C.H., and Beaty B.J. Relationships of deer mouse movement, vegetative structure, and prevalence of infection with Sin Nombre virus. J. Wildlife Dis. 35 (1999) 311-318
39. Sakamoto Y., Ishiguro M., and Kitagawa G. Akaike Information Criterion Statistics (1986), Kluwer, Dordrecht
40. Thomas A. BRugs User Manual (2004), University of Helsinki
41. United States Geological Survey. URL: http://edc.usgs.gov/.
42. Wiegert R.G. Population dynamics of cotton rats (Sigmodon hispidus) and meadow voles (Microtus pennsylvanicus) in field enclosures in South Carolina. Bull. Georgia Acad. Sci. 30 (1972) 103-110
43. Yahnke C., Meserve P., Ksiazek T., and Mills J. Patterns of infection with Laguna Negra virus in wild populations of Calomys laucha in the central Paraguayan chaco. Am. J. Trop. Med. Hygiene 65 (2001) 768-776