Studies on genome relationship and species-specific PCR marker for Dasypyrum breviaristatum in Triticeae

Hereditas

Volumn 143, Issue 2006, 2006, Pages 47-54

  Yang, Zu Jun ^a   Liu, Cheng ^a   Peng, Juan ^a   Li, Guang Rong ^a,b   Zhou, Jian Ping ^a   Deng, Ke Jun ^a   Ren, Zheng Long ^a,b  

^a UNIVERSITY OF ELECTRONIC SCIENCE AND TECHNOLOGY OF CHINA   (China)

^b SICHUAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BARLEY; CENTROMERE; CHROMATIN; CHROMOSOME ARM; CHROMOSOME TRANSLOCATION; CONTROLLED STUDY; FLUORESCENCE IN SITU HYBRIDIZATION; GENE INTERACTION; GENETIC MARKER; LONG TERMINAL REPEAT; MOLECULAR CLONING; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PLANT BREEDING; PLANT CHROMOSOME; PLANT GENETICS; POLYMERASE CHAIN REACTION; POLYPLOIDY; RANDOM AMPLIFIED POLYMORPHIC DNA; RETROPOSON; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; WHEAT;

DNA, PLANT; GENETIC MARKERS; GENOME, PLANT; IN SITU HYBRIDIZATION, FLUORESCENCE; POACEAE; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; TRITICUM;

DASYPYRUM BREVIARISTATUM; HORDEUM; THINOPYRUM INTERMEDIUM; TRITICEAE; TRITICUM AESTIVUM;

EID: 34248140263     PISSN: 00180661     EISSN: 16015223     Source Type: Journal    
DOI: 10.1111/j.2006.0018-0661.01930.x     Document Type: Article

References (38)

1. Appels, R., Moran, L. B. and Gustafson, J. P. 1986. Rye heterochromatin. I. Studies on clusters of the major repeating sequence and the identification of a new dispersed repetitive sequence element. - Can. J. Genet. Cytol. 28: 645-657.
2. Blanco, A. and Simeone, R. 1993. Chromosome pairing in hybrids and amphiploids between durum wheat and the tetraploid Dasypyrum hordeaceum. b In: Li, Z. S. and Zhuang, Q. S. (eds), 8th Int. Wheat Genet. Symp., Beijing, China, pp. 305-309.
3. Blanco, A., Simeone, R., Resta, P. et al. 1996. Genomic relationship between Dasypyrum villosum (L.) Candargy and D. hordeaceum (Cosson et Durieu) Candargy. - Genome 39: 83-92.
4. Bothmer, R. von and Claesson, L. 1990. Production and meiotic pairing of intergeneric hybrids of Triticum × Dasypyrum species. - Euphytica 51: 109-117.
5. Chen, Q., Conner, R. L., Laroche, A. et al. 1998. Genome analysis of Thinopyrum intermedium and Thinopyrum ponticum using genomic in situ hybridization. - Genome 41: 580-586.
6. De Pace, C., Paolini, V., Scarascia, M. G. T. et al. 1990. Evaluation and utilization of Dasypyrum villosum as a genetic resource for wheat improMement. - In: Wheat resources: meeting diverse needs, John Wiley and Sons, pp. 279-291.
7. De Pace, C., Deler, V., Scarascia Mugnozza, G. T. et al. 1992. Molecular and chromosomal characterization of repeated and single-copy DNA sequences in the genome of Dasypyrum villosum. - Hereditas 116: 55-65.
8. De Pace, C., Snidaro, D., Ciaffi, M. et al. 2001. Introgression of Dasypyrum villosum chromatin into common wheat improves grain protein quality. - Euphytica 117: 67-75.
9. Echenique, V., Stamova, B.,Wolts, P. et al. 2002. Frequencies of Ty1-copia and Ty3-gypsy retrroelements within the Triticeae EST databases. - Theor. Appl. Genet. 104: 840-844.
10. Frederiksen, S. 1991. Taxonomic studies in Dasypyrum (Poaceae). - Nord. J. Bot. 11: 135-142.
11. Galasso, I., Blanco, A., Katsiotis, A. et al. 1997. Genomic organization and phylogenetic relationships in the genus Dasypyrum analysed by Southern and in situ hybridization of total genomic and cloned DNA probes. - Chromosoma 106: 53-61.
12. Gu, Y. Q., Crossman, C., Kong, X. et al. 2004a. Genomic organization of the complex α-gliadin gene loci in wheat. - Theor. Appl. Genet 109: 648-657.
13. Gu, Y. Q., Coleman-Derr, D., Kong, X. et al. 2004b. Rapid genome evolution revealed by comparative sequence analysis of orthologous regions from four Triticeae genomes. - Plant Physiol. 135: 459-470.
14. Guadagnuolo, R., Saova Bianchi, D. and Felber, F. 2001. Specific genetic markers for wheat, spelt, and four wild relatives: Comparison of isozymes, RAPD, and wheat microsatellites. - Genome 44: 610-621.
15. Han, F., Fedak, G., Guo, W. et al. 2005. Rapid and repeatable elimination of a parental genome-specific DNA repeat (pGc1R-1a) in newly synthesized wheat allopolyploids. - Genetics 170: 1239-1245.
16. Jiang, H. R., Dai, D. Q. and Sun, D. F. 1992. Creation of special germplasm resources in Triticum. - J. Sichuan Agric. Univ. 10: 255-259.
17. Kashkush, K., Feldman, M. and Levy, A. A. 2002. Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. - Genetics 160: 1651-1659.
18. Kashkush, K., Feldman, M. and Levy, A. A. 2003. Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. - Nat. Genet. 33: 102-106.
19. Latto, M. C., Endo, T. R. and Nasuda, S. 2004. A PCR-based marker for targeting small rye segments in wheat background. - Genes Genet Syst. 79: 245-250.
20. Ko, J. M., Do, G. S., Suh, D. Y. et al. 2002. Identification and chromosomal organization of two rye genome-specific RAPD products useful as introgression markers in wheat. - Genome 45: 157-164.
21. Levy, A. A. and Feldman, M. 2002. The impact of polyploidy on grass genome evolution. - Plant Physiol. 130: 1587-1593.
22. Li, W. L., Chen, P. D., Qi, L. L. et al. 1995. Isolation, characterization and application of a species-specific repeated sequence from Haynaldia villosa. - Theor Appl. Genet. 90: 526-533.
23. Li, W. L., Zhang, P., Feller, J. P. et al. 2004. Sequence composition, organization, and evolution of core Triticeae genome. - Plant J. 40: 500-511.
24. Linde-Laursen, L. and Frederiksen, S. 1991. Comparision of the giemsa C- band karyotyoe of Daspyrum villosum and D. breviaristatum (4x) from Greece. b Hereditas 114: 237-244.
25. Mukai, Y., Nakahara, Y. and Yamamoto, M. 1993. Simultaneous discrimination of the three genomes in hexaploid wheat by multicolor fluorescence in situ hybridization using total genomic and highly repeated DNA probes. - Genome 36: 489-494.
26. Ma, R., Yli-Mattila, T. and Pulli, S. 2004a. Phylogenetic relationships among genotypes of worldwide collection of spring and winter rye (Secale cereale L.) determined by RAPD-PCR markers. - Hereditas 140: 210-221.
27. Ma, X. F., Fang, P. and Gustafson, J. P. 2004b. Polyploidization-induced genome variation in Triticale. - Genome 47: 839-848.
28. Ohta, S. and Morishita, M. 2001. Genome relationship in the genus of Dasypyrum (Gramineae). - Hereditas 135: 101-110.
29. Ohta, S., Koto, M., Osada, T. et al. 2002. Rediscovery of a diploid cytotype of Dasypyrum breviaristatum in Morocco. - Genet. Resour. Crop Evol. 49: 305-312.
30. Pignone, D., Galasso, I., Blanco, A. et al. 2000. Heterochromatin organization in metaphase chromosomes and interphase nuclei of Dasypyrum breviaristatum Frederiksen. - Acta Soc. Bot Pol. 69: 5-9.
31. Qi, L. L., Cao, M. S., Chen, P. D. et al. 1996. Identification, mapping and application of polymorphic DNA associated with resistance gene Pm21 of wheat. - Genome 39: 191-197.
32. Sambrook, J., Frisch, E. F. and Maniatis, J. 1989. Molecular cloning: A laboratory manual, 2nd ed. - Cold Spring Harbor Laboratory Press.
33. Shirasu, K., Schulman, A. H., Lahaye, T. et al. 2000. A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion. - Genome Res. 10: 908-915.
34. Wei, J. Z. and Wang, R. R-C. 1995. Genome-and species-specific markers and genome relationships of diploid perennial species in Triticeae based on RAPD analysis. - Genome 38: 1230-1236.
35. Wei, F., Wing, R. A. and Wise, R. P. 2002. Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley. - Plant Cell 14: 1903-1917.
36. Wicker, T., Guyot, R., Yahiaoui, N. et al. 2003. CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements. - Plant Physiol. 132: 52-63.
37. Yang, Z. J., Li, G. R., Feng, J. et al. 2005. Molecular cytogenetic characterization and disease resistance observation of wheat- Dasypyrum breviaristatum partial amphiploid and its derivatives. - Hereditas 142: 80-85.
38. Yildirim, A., Jones, S. S. and Murray, T. D. 1998. Mapping a gene conferring resistance to Pseudocercosporella herpotrichoides on chromosome 4V of Dasypyrum villosum in a wheat background. - Genome 41: 1-6.