메뉴 건너뛰기




Volumn 34, Issue 4, 2007, Pages 362-372

The Factors Shaping Synonymous Codon Usage in the Genome of Burkholderia mallei

Author keywords

Burkholderia mallei ATCC 23344; codon usage; correspondence analysis

Indexed keywords

PROTEIN;

EID: 34247882805     PISSN: 16738527     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1673-8527(07)60039-3     Document Type: Article
Times cited : (40)

References (23)
  • 1
    • 0027715731 scopus 로고
    • Codon usage: mutational bias, translational selection, or both?
    • Sharp P., Stenico M., Peden J., and Lloyd A. Codon usage: mutational bias, translational selection, or both?. Biochem Soc Trans 21 4 (1993) 835-841
    • (1993) Biochem Soc Trans , vol.21 , Issue.4 , pp. 835-841
    • Sharp, P.1    Stenico, M.2    Peden, J.3    Lloyd, A.4
  • 2
    • 0024116811 scopus 로고
    • "Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons
    • Shields D., Sharp P., Higgins D., and Wright F. "Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons. Mol Biol Evol 5 6 (1988) 704-716
    • (1988) Mol Biol Evol , vol.5 , Issue.6 , pp. 704-716
    • Shields, D.1    Sharp, P.2    Higgins, D.3    Wright, F.4
  • 3
    • 0028359705 scopus 로고
    • Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases
    • Stenico M., Lloyd A., and Sharp P. Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases. Nucleic Acids Res 22 13 (1994) 2437-2446
    • (1994) Nucleic Acids Res , vol.22 , Issue.13 , pp. 2437-2446
    • Stenico, M.1    Lloyd, A.2    Sharp, P.3
  • 4
    • 0030569016 scopus 로고    scopus 로고
    • What drives codon choices in human genes?
    • Karlin S., and Mrazek J. What drives codon choices in human genes?. J Mol Biol 262 4 (1996) 459-472
    • (1996) J Mol Biol , vol.262 , Issue.4 , pp. 459-472
    • Karlin, S.1    Mrazek, J.2
  • 6
    • 0034987248 scopus 로고    scopus 로고
    • Identification of a Burkholderia mallei polysaccharide gene cluster by subtractive hybridization and demonstration that the encoded capsule is an essential virulence determinant
    • DeShazer D., Waag D., Fritz D., and Woods D. Identification of a Burkholderia mallei polysaccharide gene cluster by subtractive hybridization and demonstration that the encoded capsule is an essential virulence determinant. Microb Pathog 30 5 (2001) 253-269
    • (2001) Microb Pathog , vol.30 , Issue.5 , pp. 253-269
    • DeShazer, D.1    Waag, D.2    Fritz, D.3    Woods, D.4
  • 8
    • 0042386315 scopus 로고    scopus 로고
    • Factors affecting codon usage in Yersinia pestis
    • Hou Z., and Yang N. Factors affecting codon usage in Yersinia pestis. Acta Biochim Biophys Sin 35 6 (2003) 580-586
    • (2003) Acta Biochim Biophys Sin , vol.35 , Issue.6 , pp. 580-586
    • Hou, Z.1    Yang, N.2
  • 9
    • 0242361575 scopus 로고    scopus 로고
    • The strength of translational selection for codon usage varies in the three replicons of Sinorhizobium meliloti
    • Peixoto L., Zavala A., Romero H., and Musto H. The strength of translational selection for codon usage varies in the three replicons of Sinorhizobium meliloti. Gene 3 20 (2003) 109-116
    • (2003) Gene , vol.3 , Issue.20 , pp. 109-116
    • Peixoto, L.1    Zavala, A.2    Romero, H.3    Musto, H.4
  • 10
    • 0242290126 scopus 로고    scopus 로고
    • The influence of translational selection on codon usage in fishes from the family Cyprinidae
    • Romero H., Zavala A., Musto H., and Bernardi G. The influence of translational selection on codon usage in fishes from the family Cyprinidae. Gene 317 1-2 (2003) 141-147
    • (2003) Gene , vol.317 , Issue.1-2 , pp. 141-147
    • Romero, H.1    Zavala, A.2    Musto, H.3    Bernardi, G.4
  • 11
    • 11044232003 scopus 로고    scopus 로고
    • Analysis of factors shaping codon usage in the mitochondrion genome of Oryza sativa
    • Liu Q., Feng Y., and Xue Q. Analysis of factors shaping codon usage in the mitochondrion genome of Oryza sativa. Mitochondrion 4 4 (2004) 313-320
    • (2004) Mitochondrion , vol.4 , Issue.4 , pp. 313-320
    • Liu, Q.1    Feng, Y.2    Xue, Q.3
  • 12
    • 0025318864 scopus 로고
    • The effective number of codons used in a gene
    • Wright F. The effective number of codons used in a gene. Gene 87 1 (1990) 23-29
    • (1990) Gene , vol.87 , Issue.1 , pp. 23-29
    • Wright, F.1
  • 13
    • 0035919773 scopus 로고    scopus 로고
    • Translational selection shapes codon usage in the GC-rich genome of Chlamydomonas reinhardtii
    • Naya H., Romero H., Carels N., Zavala A., and Musto H. Translational selection shapes codon usage in the GC-rich genome of Chlamydomonas reinhardtii. FEBS Lett 501 2-3 (2001) 127-130
    • (2001) FEBS Lett , vol.501 , Issue.2-3 , pp. 127-130
    • Naya, H.1    Romero, H.2    Carels, N.3    Zavala, A.4    Musto, H.5
  • 14
    • 0035036803 scopus 로고    scopus 로고
    • Evolution of base composition and codon usage bias in the genus Flavivirus
    • Jenkins G., Pagel M., Gould E., de A Zanotto P., and Holmes E. Evolution of base composition and codon usage bias in the genus Flavivirus. J Mol Evol 52 4 (2001) 383-390
    • (2001) J Mol Evol , vol.52 , Issue.4 , pp. 383-390
    • Jenkins, G.1    Pagel, M.2    Gould, E.3    de A Zanotto, P.4    Holmes, E.5
  • 15
    • 0027993601 scopus 로고
    • Evolution of codon usage and base contents in Kinetoplastid protozoans
    • Alvarez F., Robello C., and Vignali M. Evolution of codon usage and base contents in Kinetoplastid protozoans. Mol Biol Evol 11 5 (1994) 790-802
    • (1994) Mol Biol Evol , vol.11 , Issue.5 , pp. 790-802
    • Alvarez, F.1    Robello, C.2    Vignali, M.3
  • 16
    • 0033935187 scopus 로고    scopus 로고
    • The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes
    • Tillier E., and Collins R. The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes. J Mol Evol 50 3 (2000) 249-257
    • (2000) J Mol Evol , vol.50 , Issue.3 , pp. 249-257
    • Tillier, E.1    Collins, R.2
  • 17
    • 0242290154 scopus 로고    scopus 로고
    • Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content
    • Singer G., and Hickey D. Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content. Gene 317 1-2 (2003) 39-47
    • (2003) Gene , vol.317 , Issue.1-2 , pp. 39-47
    • Singer, G.1    Hickey, D.2
  • 18
    • 0030012885 scopus 로고    scopus 로고
    • Preference for guanosine at first codon position in highly expressed Escherichia coli genes. A relationship with translational efficiency
    • Gutierrez G., Marquez L., and Marin A. Preference for guanosine at first codon position in highly expressed Escherichia coli genes. A relationship with translational efficiency. Nucleic Acids Res 24 13 (1996) 2525-2527
    • (1996) Nucleic Acids Res , vol.24 , Issue.13 , pp. 2525-2527
    • Gutierrez, G.1    Marquez, L.2    Marin, A.3
  • 19
    • 0033551151 scopus 로고    scopus 로고
    • Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
    • Duret L., and Mouchiroud D. Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proc Natl Acad Sci USA 96 8 (1999) 4482-4487
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.8 , pp. 4482-4487
    • Duret, L.1    Mouchiroud, D.2
  • 20
    • 0034657798 scopus 로고    scopus 로고
    • Codon usage in Chlamydia trachomatis is the result of strand-specific mutational biases and a complex pattern of selective forces
    • Romero H., Zavala A., and Musto H. Codon usage in Chlamydia trachomatis is the result of strand-specific mutational biases and a complex pattern of selective forces. Nucleic Acids Res 28 10 (2000) 2084-2090
    • (2000) Nucleic Acids Res , vol.28 , Issue.10 , pp. 2084-2090
    • Romero, H.1    Zavala, A.2    Musto, H.3
  • 21
    • 0032894285 scopus 로고    scopus 로고
    • Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila
    • Comeron J., Kreitman M., and Aguade M. Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila. Genetics 151 1 (1999) 239-249
    • (1999) Genetics , vol.151 , Issue.1 , pp. 239-249
    • Comeron, J.1    Kreitman, M.2    Aguade, M.3
  • 22
    • 0036676696 scopus 로고    scopus 로고
    • Analysis of factors shaping S. pneumoniae codon usage
    • (in Chinese with an English abstract)
    • Hou Z., and Yang N. Analysis of factors shaping S. pneumoniae codon usage. Acta Genetica Sinica 29 8 (2002) 747-752 (in Chinese with an English abstract)
    • (2002) Acta Genetica Sinica , vol.29 , Issue.8 , pp. 747-752
    • Hou, Z.1    Yang, N.2
  • 23
    • 0036216144 scopus 로고    scopus 로고
    • Trends in codon and amino acid usage in Thermotoga maritima
    • Zavala A., Naya H., Romero H., and Musto H. Trends in codon and amino acid usage in Thermotoga maritima. J Mol Evol 54 5 (2002) 563-568
    • (2002) J Mol Evol , vol.54 , Issue.5 , pp. 563-568
    • Zavala, A.1    Naya, H.2    Romero, H.3    Musto, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.