Phylogeography of the capercaillie in Eurasia: What is the conservation status in the Pyrenees and Cantabrian Mounts?

Conservation Genetics

Volumn 8, Issue 3, 2007, Pages 513-526

  Duriez, Olivier ^a,c   Sachet, Jean Marie ^a   Ménoni, Emmanuel ^b   Pidancier, Nathalie ^a   Miquel, Christian ^a   Taberlet, Pierre ^a  

^a UNIVERSITÉ JOSEPH FOURIER   (France)

^b OFFICE NATIONAL DE LA CHASSE ET DE LA FAUNE SAUVAGE   (France)

^c NETHERLANDS INSTITUTE OF ECOLOGY NIOO KNAW   (Netherlands)

Author keywords

Evolutionary significant unit; Glacial refugia; Grouse; Mitochondrial DNA control region; Tetrao urogallus

Indexed keywords

CLADISTICS; COLONIZATION; CONSERVATION STATUS; ENDANGERED SPECIES; GAMEBIRD; GENETIC ANALYSIS; HABITAT FRAGMENTATION; KEYSTONE SPECIES; MITOCHONDRIAL DNA; PHYLOGEOGRAPHY; POPULATION BOTTLENECK; REFUGIUM; RELATEDNESS; SPECIES CONSERVATION;

CANTABRIAN MOUNTAINS; EURASIA; EUROPE; IBERIAN MASSIF; IBERIAN PENINSULA; PYRENEES; SOUTHERN EUROPE; SPAIN;

TETRAO PARVIROSTRIS; TETRAO UROGALLUS; TETRAONIDAE;

EID: 34247647425     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-006-9165-2     Document Type: Article

References (77)

1. Avise JC (2000) Phylogeography. The history and formation of species. Harvard University Press, Cambridge, Massachusetts, USA
2. Baba Y, Fujimaki Y, Klaus S, Butorina O, Drovetski SV, Koike H (2002) Molecular population phylogeny of the hazel grouse Bonasa bonasia in East Asia inferred from mitochondrial control-region sequences. Wildl Biol 8:251-259
3. Bacinschi D, Neacsa O (1985) Principalele caracteristici climatice ale Carpatilor Romanesti, Lucrarile stiintifice ale institutului de cercetari si productie pentru cultura pajistilor Magurele-Brasov. Pajistile din Carpatii Romaniei 10:33-74
4. Bandelt H-J, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37-48
5. Bañuelos MJ, Quevedo M, Obeso JR (2004) Conservation of the Cantabrian capercaillie (Tetrao urogallus cantabricus): A challenge at the edge of the species distribution. Grouse News 28:20-23
6. Barrowclough GF, Groth JG, Mertz LA, Gutiérrez RJ (2004) Phylogeographic structure, gene flow and species status in blue grouse (Dendragapus obscurus). Mol Ecol 13:1911-1922
7. Bretagnolle V, Zotier R, Jouventin P (1990) Comparative population biology of four prions (genus Pachyptila) from the Indian Ocean and consequences for their taxonomic status. Auk 107:305-316
8. Brito PH (2005) The influence of Pleistocene glacial refugia on tawny owl genetic diversity and phylogeography in western Europe. Mol Ecol 14:3077-3094
9. Caizergue A, Bernard-Laurent A, Brenot J-F, Ellison L, Rasplus J-Y (2003a) Population genetic structure of rock ptarmigan Lagopus mutus in Northern and Western Europe. Mol Ecol 12:2267-2274
10. Caizergue A, Rätti O, Helle P, Rotelli L, Ellison L, Rasplus J-Y (2003b) Population genetic structure of male black grouse (Tetrao tetrix L.) in fragmented vs. continuous landscapes. Mol Ecol 12:2297-2305
11. Castroviejo JB (1975) El urogallo en España. Monografías de la Estación Biológica de Doñana, Sevilla
12. Couturier M, Couturier A (1980) Les coqs de bruyère. F. Dubusc, Boulogne, France
13. Cramp S, Simmons KEL (1982) Tetrao urogallus Western Capercaillie. In: Cramp S, Simmons KEL (eds) Handbook of the Birds of Europe, the Middle East and North Africa. Oxford University Press, Oxford
14. Crandall KA, Bininda-Edmonds ORP, Mace GM, Wayne RK (2000) Considering evolutionary processes in conservation biology. TREE 15:290-295
15. de Juana E (1994) Family Tetraonidae. In: del Hoyo J, Elliott A, Sargatal J (eds) Handbook of the birds of the World. Lynx Edición, Barcelona, pp 376-410
16. Dimcheff DE, Drovetski SV, Mindell DP (2002) Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes. Mol Phyl Evol 24:203-215
17. Drovetski SV (2002) Molecular phylogeny of grouse: individual and combined performance of W-linked, autosomal, and mitochondrial loci. Syst Biol 51:930-945
18. Drovetski SV (2003) Plio-Pleistocene climatic oscillations, Holarctic biogeography and speciation in an avian subfamily. J Biogeogr 30:1173-1181
19. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
20. Felsenstein J (1988) Phylogenies from molecular sequences: inference and reliability. Ann Rev Genet 22:521-565
21. Fraser DF, Bernatchez L (2001) Adaptive evolutionary conservation: towards a unified concept for defining conservation units. Mol Ecol 10:2741-2752
22. Funk DJ, Omland KE (2003) Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Ann Rev Ecol Evol Syst 34:397-423
23. Gascuel O (1997) BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14:685-695
24. Godoy JA, Negro JJ, Hiraldo F, Donázar JA (2004) Phylogeography, genetic structure and diversity in the endangered bearded vulture (Gypaetus barbatus, L.) as revealed by mitochondrial DNA. Mol Ecol 13:371-390
25. Gutiérrez RJ, Barrowclough GF, Groth JG (2000) A classification of the grouse (Aves: Tetraoninae) based on mitochrondial DNA sequences. Wildl Biol 6:205-211
26. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
27. Hasegawa M, Kishino K, Yano T (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22:160-174
28. Hewitt G (2000) The genetic legacy of the quaternary ice ages. Nature 405:907-913
29. Hewitt GM (2004) Genetic consequences of climatic oscillations in the quaternary. Phil Trans R Soc Lond B 359:183-195
30. Horváth MB, Martinez-Cruz B, Negro JJ, Kalmár L, Godoy JA (2005) An overlooked DNA source for non-invasive genetic analysis in birds. J Avian Biol 36:84-88
31. Ingram C (1915) A few notes on Tetrao urogallus and its allies. Ibis
32. Isaac NJB, Mallet J, Mace GM (2004) Taxonomic inflation: its influence on macroecology and conservation. TREE 19:464-469
33. Isler LM, Isler PR, Whitney BM (1998) Use of vocalizations to establish species limits in antbirds (Passeriformes: Thamnophilidae). Auk 115:577-590
34. Knowles LL, Maddison WP (2002) Statistical phylogeography. Mol Ecol 11:2623-2635
35. Kvist L, Viiri K, Dias PC, Rytkönen S, Orell M (2004) Glacial history and colonization of Europe by the blue tit Parus caeruleus. J Avian Biol 35:352-359
36. Lenk P, Fritz U, Joger U, Winks M (1999) Mitochondrial phylogeography of the European pond turtle, Emys orbicularis (Linnaeus 1758). Mol Ecol 8:1911-1922
37. Liukkonen-Anttila T, Rätti O, Kvist L, Helle P, Orell M (2004) Lack of genetic structuring and subspecies differentiation in the capercaillie (Tetrao urogallus) in Finland. Ann Zool Fen 41:619-633
38. Liukkonen-Anttila T, Uimaniemi L, Orell M, Lumme J (2002) Mitochondrial DNA variation and the phylogeography of the grey partridge (Perdix perdix) in Europe: from Pleistocene history to present day populations. J Evol Biol 15:971-982
39. Lucchini V, Höglund J, Klaus S, Swenson JE, Randi E (2001) Historical biogeography and a mitochondrial DNA phylogeny of grouse and ptarmigan. Mol Phyl Evol 20:149-162
40. Martin J-F, Novoa C, Blanc-Manel S, Taberlet P (2003) Les populations de perdrix grises des Pyrénées (Perdix perdix hispaniensis) ont-elles subi une introgression génétique à partir d'individus d'élevage? Analyse du polymorphisme de l'ADN mitochondrial. In: Les actes du BRG, Bureau des Ressources Génétiques, pp 115-126
41. Meffe GK, Carroll CR (1997) Principles of conservation biology, 2nd edn. Sinauer Associates Inc, Sunderland, Massachusetts
42. Ménoni E (1991) Ecologie et dynamique des populations du Grand Tétras dans les Pyrénées, avec des références spéciales à la biologie de la reproduction chez les poules - quelques applications à sa conservation. Thése de doctorat, Université Paul Sabatier, Toulouse
43. Ménoni E, Apollinaire J, Crampe M (2005) The Pyrenean capercaillie is occupying also the ecological niche of the black grouse. In: 10th International Grouse sympsium, p. 42. Office National de la Chasse et de la Faune sauvage, Luchon
44. Moritz C (1994) Defining 'evolutionarily significant units' for conservation. TREE 9:373-375
45. Moritz C (2002) Strategies to protect biological diversity and the evolutionary processes that sustain it. Syst Biol 51:238-254
46. Nagy L, Grabherr G, Körner C, Thompson DBA (2003) Alpine biodiversity in Europe. Springer, Berlin
47. Nappée C, Douhéret G (2004) Development of the reintroduced capercaillie population in the Parc National des C évennes. Grouse News 28:9-11
48. Nei M (1987). Molecular evolutionary genetics. Columbia University Press, New-York
49. Newton I (2003) The speciation and biogeography of birds. Academic Press, London
50. Obeso JR, Bañuelos MJ (2003) El urogallo (Tetrao urogallus cantabricus) en la Cordillera Cantabrica. Parques Nacionales, Ministerio del Medio Ambiante, Madrid
51. Ozenda P (1985) La végétation de la chaîne alpine dans l'espace montagnard européen. Masson, Paris
52. Pakkala T, Pellikka J, Lindén H (2003) Capercaillie Tetrao urogallus-a good candidate for an umbrella species in taiga forests. Wildl Biol 9:309-316
53. Petit RJ, Brewer S, Bordács S, Burg K, Cheddadi R, Coart E, Cottrell J, Csaikl UM, van Dam B, Deans JD, Espinel S, Fineschi S, Finkeldey R, Glaz I, Goicoechea PG, Svejgaard Jensen J, König AO, Lowe AJ, Flemming Madsen S, Mátyvs G, Munro RC, Popescu F, Slade D, Tabbener H, de Vries SGM, Ziegenhagen B, de Beaulieu J-L, Kremer A (2002) Identification of refugia and post-glacial colonisation routes of European white oaks based on chloroplast DNA and fossil pollen evidence. For Ecol Manag 156:49-74
54. Pitra C, Lieckfeldt D, Alonso JC (2000) Population subdivision in Europe's great bustard inferred from mitochondrial and nuclear DNA sequence variation. Mol Ecol 9:1165-1170
55. Pompanon F, Bonin A, Bellemain E, Taberlet P (2005) Geno-typing errors: causes, consequences and solutions. Nat Rev Genet 6:847-859
56. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818
57. Randi E, Lucchini V (1998) Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J Mol Evol 47:449-462
58. Randi E, Tabarroni C, Rimondi S, Lucchini V, Sfougaris A (2003) Phylogeography of the rock partridge (Alectoris graeca). Mol Ecol 12:2201-2214
59. Régnaut S (2004) Population genetics of Capercaillie (Tetrao urogallus) in the Jura and the Pyrenees: A non-invasive approach to avian conservation genetics. PhD thesis, University of Lausanne, Lausanne
60. Rocamora G, Yeatman-Berthelot D (1999) Oiseaux menacés et à surveiller en France. Société d'Etudes Ornithologiques de France / Ligue pour la Protection des Oiseaux, Paris, France
61. Rodriguez AE, Obeso JR (2000) Diet of the Cantabrian capercaillie: geographic variation and energetic content. Ardeola 47:77-83
62. Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497
63. Ryder OA (1986) Species conservation and systematics: the dilemna of subspecies. TREE 1:9-10
64. Salzburger W, Martens J, Sturmbauer C (2002) Paraphyly of the Blue Tit (Parus caeruleus) suggested from cytochrome b sequences. Mol Phyl Evol 24:19-25
65. Schlichting CD, Pigliucci M (1998) Phenotypic evolution: a reaction norm perspective. Sinauer Associates, Inc., Sunderland
66. Segelbacher G, Höglund J, Storch I (2003) From connectivity to isolation: genetic consequences of population fragmentation in capercaillies across Europe. Mol Ecol 12:1773-1780
67. Segelbacher G, Storch I (2002) Capercaillie in the Alps: genetic evidence of metapopulation structure and population decline. Mol Ecol 11:1669-1677
68. Steinfartz S, Veith M, Tautz D (2000) Mitochondrial sequence analysis of Salamandra taxa suggests old splits of major lineages and postglacial recolonizations of Central Europe from distinct source populations of Salamandra salamandra. Mol Ecol 9:397-410
69. Storch I (2000) Grouse status survey and conservation action plan 2000-2004. IUCN Switzerland
70. Suter W, Graf RF, Hess R (2002) Capercaillie (Tetrao urogallus) and avian biodiversity: testing the umbrella-species concept. Conserv Biol 16:778-788
71. Swofford DL (1998) PAUP*: phylogenetic analysis using parsimony (*and other methods). Sinauer Associates Inc., Sunderland, MA
72. Taberlet P, Bouvet J (1994) Mitochondrial DNA polymorphism, phylogeography, and conservation genetics of the brown bear (Ursus arctos) in Europe. Proc R Soc Lond B 255:195-200
73. Taberlet P, Fumagalli L, Wust-Saucy A-G, Cosson J-F (1998) Comparative phylogeography and postglacial colonization routes in Europe. Mol Ecol 7:453-464
74. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595
75. Tajima F (1996) The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites. Genetics 143:1457-1465
76. Via S, Gomulkiewicz R, De Jong G, Scheiner SM, Schlichting CD, Van Tienderen PH (1995) Adaptive phenotypic plasticity: consensus and controversy. TREE 10:212-217
77. Waples RS (1991) Pacific salmon, Oncorhynchus spp, and the definition of 'species' under the endangered species act. Mar Fish Rev 53:11-22