Insights into the structure of plant α-type phospholipase D

FEBS Journal

Volumn 274, Issue 10, 2007, Pages 2630-2640

  Stumpe, Susanne ^a   König, Stephan ^a   Ulbrich Hofmann, Renate ^a  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

Author keywords

Calcium binding; Phospholipase D; Small angle X ray scattering; Stability; Structure

Indexed keywords

CALCIUM ION; PHOSPHOLIPASE D; PHOSPHOLIPASE D ALPHA; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; BETA SHEET; BIOCATALYST; CABBAGE; CALCIUM BINDING; CIRCULAR DICHROISM; DISSOCIATION CONSTANT; ENZYME ACTIVITY; ENZYME BINDING; ENZYME STABILITY; ENZYME STRUCTURE; FLUORESCENCE; PRIORITY JOURNAL; RADIATION SCATTERING; ULTRAVIOLET SPECTROSCOPY;

BRASSICA; CALCIUM; ENZYME STABILITY; MODELS, MOLECULAR; OSMOLAR CONCENTRATION; PHOSPHOLIPASE D; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY; SPECTROMETRY, FLUORESCENCE; SPECTROPHOTOMETRY, ULTRAVIOLET;

BRASSICA OLERACEA VAR. CAPITATA; EUKARYOTA; MAMMALIA;

EID: 34247646572     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2007.05798.x     Document Type: Article

References (44)

1. Wang X (2005) Regulatory functions of phospholipase D and phosphatidic acid in plant growth, development, and stress responses. Plant Physiol 139, 566 573.
2. Munnik T (2001) Phosphatidic acid: an emerging plant lipid second messenger. Trends Plant Sci 6, 227 233.
3. McDermott M, Wakelam MJ Morris AJ (2004) Phospholipase D. Biochem Cell Biol 82, 225 253.
4. Ulbrich-Hofmann R (2000) Phospholipases used in lipid transformations. In Enzymes in Lipid Modification (Bornscheuer U, ed.), pp. 219 262. Wiley-VCH, Weinheim.
5. Qin C Wang X (2002) The Arabidopsis phospholipase D family. Characterization of a calcium-independent and phosphatidylcholine-selective PLDζ1 with distinct regulatory domains. Plant Physiol 128, 1057 1068.
6. Eliáš M, Potocký M, Cvrčková F Žárský VV (2002) Molecular diversity of phospholipase D in angiosperms. BMC Genomics 3.
7. Sharma S Gupta MN (2001) Purification of phospholipase D from Dacus carota by three-phase partitioning and its characterization. Protein Expr Purif 21, 310 316.
8. Schäffner I, Rücknagel KP, Mansfeld J Ulbrich-Hofmann R (2002) Genomic structure, cloning and expression of two phospholipase D isoenzymes from white cabbage. Eur J Lipid Sci Technol 104, 79 87.
9. Schöps R, Schierhorn A, Schäffner I, Mansfeld J Ulbrich-Hofmann R (2002) Identification of phospholipase D from cabbage as N-terminally acetylated PLD2. J Protein Chem 21, 407 411.
10. Ponting CP Kerr ID (1996) A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases: identification of duplicated repeats and potential active site residues. Protein Sci 5, 914 922.
11. Sung TC, Roper RL, Zhang Y, Rudge SA, Temel R, Hammond SM, Morris AJ, Moss B, Engebrecht J Frohman MA (1997) Mutagenesis of phospholipase D defines a superfamily including a trans-Golgi viral protein required for poxvirus pathogenicity. EMBO J 16, 4519 4530.
12. Leiros I, McSweeney S Hough E (2004) The reaction mechanism of phospholipase D from Streptomyces sp. strain PMF. Snapshots along the reaction pathway reveal a pentacoordinate reaction intermediate and an unexpected final product. J Mol Biol 339, 805 820.
13. Abergel C, Abousalham A, Chenivesse S, Rivière M, Moustacas-Gardies AM Verger R (2001) Crystallization and preliminary crystallographic study of a recombinant phospholipase D from cowpea (Vigna unguiculata L. Walp). Acta Crystallogr D Biol Crystallogr 57, 320 322.
14. Allgyer TT Wells MA (1979) Phospholipase D from savoy cabbage: purification and preliminary kinetic characterization. Biochemistry 18, 5348 5353.
15. Abousalham A, Nari J Noat G (1999) Phospholipase D from plants: purification, enzymology and structural analysis. Current Topics Plant Biol 1, 123 132.
16. Wang X, Xu L Zheng L (1994) Cloning and expression of phosphatidylcholine-hydrolyzing phospholipase D from Ricinus communis L. J Biol Chem 269, 20312 20317.
17. Lambrecht R Ulbrich-Hofmann R (1992) A facile purification procedure of phospholipase D from cabbage and its characterization. Biol Chem Hoppe Seyler 373, 81 88.
18. Abousalham A, Teissere M, Gardies AM, Verger R Noat G (1995) Phospholipase D from soybean (Glycine max L.) suspension-cultured cells: purification, structural and enzymatic properties. Plant Cell Physiol 36, 989 996.
19. El Maarouf H, Carrière F, Rivière M Abousalham A (2000) Functional expression in insect cells, one-step purification and characterization of a recombinant phospholipase D from cowpea (Vigna unguiculata L. Walp). Protein Eng 13, 811 817.
20. Lerchner A, Mansfeld J, Schäffner I, Schöps R, Beer HK Ulbrich-Hofmann R (2005) Two highly homologous phospholipase D isoenzymes from Papaver somniferum L. with different transphosphatidylation potential. Biochim Biophys Acta 1737, 94 101.
21. Oblozinsky M, Schoeps R, Ulbrich-Hofmann R Bezakova L (2003) Two uncommon phospholipase D isoenzymes from poppy seedlings (Papaver somniferum L.). Biochim Biophys Acta 1631, 153 159.
22. Svergun DI (1992) Determination of the regularization parameter in indirect-transform methods using perceptual criteria. J Appl Crystallogr 25, 495 503.
23. Konarev PV, Volkov VV, Sokolova AV, Koch MHJ Svergun DI (2003) PRIMUS: a Windows PC-based system for small-angle scattering data analysis. J Appl Crystallogr 36, 1277 1282.
24. Svergun DI (1999) Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. Biophys J 76, 2879 2886.
25. Whitmore L Wallace BA (2004) DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data. Nucleic Acids Res 32, W668 W673.
26. Andrade MA, Chacon P, Merelo JJ Moran F (1993) Evaluation of secondary structure of proteins from UV circular dichroism spectra using an unsupervised learning neural network. Protein Eng 6, 383 390.
27. Fersht A (1999) Structure and Mechanism in Protein Science: a Guide to Enzyme Catalysis and Protein Folding, p. 208. W.H. Freeman, New York.
28. Stuckey JA Dixon JE (1999) Crystal structure of a phospholipase D family member. Nat Struct Biol 6, 278 284.
29. Leiros I, Secundo F, Zambonelli C, Servi S Hough E (2000) The first crystal structure of a phospholipase D. Structure Fold Des 8, 655 667.
30. Harding SE (1997) Hydrodynamic properties of proteins. In Protein Structure: a Practical Approach (Creighton TE, ed.), pp. 219 251. Oxford University Press, New York, NY.
31. Zheng L, Shan J, Krishnamoorthi R Wang X (2002) Activation of plant phospholipase Dβ by phosphatidylinositol 4,5-bisphosphate: characterization of binding site and mode of action. Biochemistry 41, 4546 4553.
32. Johnson WC Jr. (1990) Protein secondary structure and circular dichroism: a practical guide. Proteins 7, 205 214.
33. Hwang IS, Park SJ, Roh T, Choi M Kim HJ (2001) Investigation of sulfhydryl groups in cabbage phospholipase D by combination of derivatization methods and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 15, 110 115.
34. Younus H, Schöps R, Lerchner A, Rücknagel KP, Schierhorn A, Saleemuddin M Ulbrich-Hofmann R (2003) Proteolytic sensitivity of a recombinant phospholipase D from cabbage: identification of loop regions and conformational changes. J Protein Chem 22, 499 508.
35. del Valle LJ, Escribano C, Pérez JJ Garriga P (2002) Calcium-induced decrease of the thermal stability and chaperone activity of alpha-crystallin. Biochim Biophys Acta 1601, 100 109.
36. Zheng L, Krishnamoorthi R, Zolkiewski M Wang X (2000) Distinct Ca2+ binding properties of novel C2 domains of plant phospholipase Dα and β. J Biol Chem 275, 19700 19706.
37. Bittova L, Sumandea M Cho W (1999) A structure-function study of the C2 domain of cytosolic phospholipase A2. Identification of essential calcium ligands and hydrophobic membrane binding residues. J Biol Chem 274, 9665 9672.
38. Nalefski EA, Wisner MA, Chen JZ, Sprang SR, Fukuda M, Mikoshiba K Falke JJ (2001) C2 domains from different Ca2+ signaling pathways display functional and mechanistic diversity. Biochemistry 40, 3089 3100.
39. Pappan K, Zheng L, Krishnamoorthi R Wang X (2004) Evidence for and characterization of Ca2+ binding to the catalytic region of Arabidopsis thaliana phospholipase Dβ. J Biol Chem 279, 47833 47839.
40. Gill SC von Hippel PH (1989) Calculation of protein extinction coefficients from amino acid sequence data. Anal Biochem 182, 319 326.
41. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680 685.
42. Volkov VV Svergun DI (2003) Uniqueness of ab initio shape determination in small-angle scattering. J Appl Crystallogr 36, 860 864.
43. Kelly SM, Jess TJ Price NC (2005) How to study proteins by circular dichroism. Biochim Biophys Acta 1751, 119 139.
44. D'Arrigo P, Piergianni V, Scarcelli D Servi S (1995) A spectrophotometric assay for phospholipase D. Anal Chimica Acta 304, 249 254.