Modeling treatment processes using information extraction

Studies in Computational Intelligence

Volumn 48, Issue , 2007, Pages 189-224

  Kaiser, Katharina ^a   Miksch, Silvia ^b  

^a VIENNA UNIVERSITY OF TECHNOLOGY   (Austria)

^b DANUBE UNIVERSITY KREMS   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 34247602699     PISSN: 1860949X     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-3-540-47527-9_8     Document Type: Article

References (46)

1. Kohn L.T., Corrigan J.M., and Donaldson M.S., editors. To Err Is Human: Building a Safer Health System. National Academy Press, Washington, DC, 2000
2. Field M.J. and Lohr K.N., editors. Clinical Practice Guidelines: Directions for a New Program. National Academies Press, Institute of Medicine, Washington DC, 1990
3. de Clercq P.A., Blom J.A., Korsten H.H.M., and Hasman A. Approaches for creating computer-interpretable guidelines that facilitate decision support. Artificial Intelligence in Medicine, 31(1):1-27, 2004
4. Peleg M., Tu S.W., Bury J., Ciccarese P., Fox J., Greenes R.A., Hall R., Johnson P.D., Jones N., Kumar A., Miksch S., Quaglini S., Seyfang A., Shortliffe E.H., and Stefanelli M. Comparing Computer-Interpretable Guideline Models: A Case-Study Approach. Journal of the American Medical Informatics Association (JAMIA), 10(1):52-68, 2003
5. Svátek V. and Růžička M. Step-by-step mark-up of medical guideline documents. International Journal of Medical Informatics, 70(2-3):319-335, 2003
6. Polvani K.-A., Agrawal A., Karras B., Deshpande A., and Shiffman R. GEM Cutter Manual. Yale Center for Medical Informatics, 2000
7. Shiffman R.N., Karras B.T., Agrawal A., Chen R., Marenco L., and Nath S. GEM: A proposal for a more comprehensive guideline document model using XML. Journal of the American Medical Informatics Association (JAMIA) 7(5):488-498, 2000
8. Gem cutter: Screenshot. http://gem.med.yale.edu/GEM_Cutter/ gem_cutter.htm, 2005. [retrieved: Oct. 20, 2005]
9. Votruba P., Miksch S., and Kosara R. Facilitating knowledge maintenance of clinical guidelines and protocols. In Fieschi M., Coiera E., and Li Y.-C.J., editors, Proceedings from the Medinfo 2004 World Congress on Medical Informatics, pp. 57-61. IOS Press, 2004
10. Shahar Y., Young O., Shalom E., Mayaffit A., Moskovitch R., Hessing A., and Galperin M. DEGEL: A hybrid, multiple-ontology framework for specification and retrieval of clinical guidelines. In Dojat M., Keravnou E., and Barahona P., editors, Proceedings of the 9th Conference on Artificial Intelligence in Medicine in Europe, AIME 2003 volume 2780 of LNAI, pp. 122-131, Protaras, Cyprus, Springer, Berlin Heidelberg New York, 2003
11. Kosara R. and Miksch S. Metaphors of movement: A visualization and user interface for time-oriented, skeletal plans. Artificial Intelligence in Medicine, Special Issue: Information Visualization in Medicine, 22(2):111-131, 2001
12. Gennari J.H., Musen M.A., Fergerson R.W., Grosso W.E., Crubézy M., Eriksson H., Noy N.F., and Tu S.W. The evolution of protégé: An environment for knowledge-based systems development. International Journal of Human Computer Studies, 58(1):89-123, 2003
13. Sutton D.R. and Fox J. The syntax and semantics of the PRO forma guideline modeling language. Journal of the American Medical Informatics Association (JAMIA), 10(5):433-443, 2003
14. Arezzo overview. http://www.infermed.com/arezzo/arezzo-components/, 2006. [retrieved: March 22, 2006]
15. Arezzo composer. http://www.infermed.com/arezzo/arezzo-create-guideline/ 2006. [retrieved: March 22, 2006]
16. R. Steele and Fox J. Tallis PROforma primer - introduction to PROforma language and software with worked examples. Technical report, Advanced Computation Laboratory, Cancer Research, London, UK, 2002
17. Balser M., Coltell O., van Croonenborg J., Duelli C., van Harmelen F., Jovell A., Lucas P., Marcos M., Miksch S., Reif W., Rosenbrand K., Seyfang A., and ten Teije A. Protocure: Integrating formal methods in the development process of medical guidelines and protocols. In Kaiser K., Mikschc S., and Tu S.W., editors, Computer-based Support for Clinical Guidelines and Protocols. Proceedings of the Symposium on Computerized Guidelines and Protocols (CGP 2004), volume 101 of Studies in Health Technology and Informatics, pp. 103-107, Prague, Czech Republic, IOS Press, 2004
18. Seyfang A., Miksch S., Polo-Conde C., Wittenberg J., Marcos M., and Rosenbrand K. MHB - a many-headed bridge between informal and formal guideline representations. In Proceedings of the 10th Conference on Artificial Intelligence in Medicine in Europe, AIME 2005, volume 3581 of LNAI, pp. 146-150, Aberdeen, UK, Springer, Berlin Heidelberg New York, 2005
19. Campbell J.R., Tu S.W., Mansfield J.G., Boyer J.I., McClay J., Parker C., Ram P., Scheitel S.M., and McDonald K. The SAGE guideline model: A knowledge representation framework for encoding interoperable clinical practice guidelines. In Proceedings of the AMIA Annual Symposium, November 2003
20. Seyfang A., Miksch S., Marcos M., Wittenberg J., Polo-Conde C., and Rosenbrand K. Bridging the gap between informal and formal guideline representations. In European Conference on Artificial Intelligence (ECAI-2006), 2006, forthcoming
21. Tu S.W., Musen M.A., Shankar R., Campbell J., Hrabak K., McClay J., Huff S.M., McClure R., Parker C., Rocha R., Abarbanel R., Beard N., Glasgow J., Mansfield G., Ram P., Ye Q., Mays E., Weida T., Chute C.G., McDonald K., Mohr D., Nyman M.A., Scheital S., Solbrig H., Zill D.A., and Goldstein M.K. Modeling guidelines for integration into clinical workflow. In Fieschi M., Coiera E., and Li Y.-C.J., editors, Proceedings from the Medinfo 2004 World Congress on Medical Informatics pp. 174-178. IOS Press, 2004
22. Kaiser K., Akkaya C., and Miksch S. How can information extraction ease formalizing treatment processes in clinical practice guidelines? A method and its evaluation. Artificial Intelligence in Medicine, 2006 doi:10.1016/j.artmed. 2006.07.011
23. Appelt D.E. Introduction to information extraction. AI Communications 12:161-172, 1999
24. Cowie J. and Lehnert W. Information extraction. Communications of the ACM, 39(1):80-91, 1996
25. Yangarber R. Scenario Customization for Information Extraction. PhD thesis, New York University, New York, January 2001
26. Kushmerick N., Weld D.S., and Doorenbos R.B. Wrapper induction for information extraction. In International Joint Conference on Artificial Intelligence, Nagoya, 1997
27. Hobbs J.R., Appelt D., Tyson M., Bear J., and Islael D. SRI international: Description of the FASTUS system used for MUC-4. In Proceedings of the 4th Message Understanding Conference (MUC-4), pp. 268-275, 1992
28. Ayuso D., Boisen S., Fox H., Gish H., Ingria R., and Weischedel R. BBN: Description of the PLUM system as used for MUC-4. In Proceedings of the Fourth Message Understanding Conference (MUC-4), pp. 169-176, 1992
29. Yangarber R. and Grishman R. NYU: Description of the Proteus/PET system as used for MUC-7 ST. In Proceedings of the 7th Message Understanding Conference: MUC-7, Washington, DC, 1998
30. Riloff E. Automatically constructing a dictionary for information extraction tasks. In Proceedings of the National Conference on Artificial Intelligence (AAAI), pp. 811-816, 1993
31. Soderland S. Learning information extraction rules for semi-structured and free text. Machine Learning, 34(1-3):233-272, 1999
32. Cunningham H., Maynard D., Bontcheva K., and Tablan V. GATE: A framework and graphical development environment for robust NLP tools and applications. In Proceedings of the 40th Anniversary Meeting of the Association for Computational Linguistics (ACL'02), Philadelphia, July 2002
33. Riloff E. and Jones R. Learning dictionaries for information extraction by multi-level bootstrapping. In Proceedings of the National Conference on Artificial Intelligence (AAAI), pp. 474-479. AAAI/MIT, 1999
34. Agichtein E. and Gravano L. Snowball: Extracting relations from large plaintext collections. In Proceedings of the 5th ACM International Conference on Digital Libraries, 2000
35. Riloff E. An empirical study of automated dictionary construction for information extraction in three domains. Artificial Intelligence, 85(1-2):101-134, 1996
36. Yangarber R., Grishman R., Tapanainen P., and Huttunen S. Automatic acquisition of domain knowledge for information extraction. In Proceedings of the 18th International Conference on Computational Linguistics (COLING 2000), Saarbrücken, Germany, August 2000
37. Muslea I., Minton S., and Knoblock C. A hierarchical approach to wrapper induction. In Etzioni O., Müller J.P., and Bradshaw J.M., editors, Proceedings of the International Conference on Autonomous Agents, pp. 190-197, Seattle, WA, USA, ACM, 1999
38. Kushmerick N. Wrapper induction: Efficiency and expressiveness. Artificial Intelligence, 118(1-2):15-68, 2000
39. Baumgartner R., Flesca S., and Gottlob G. Visual Web information extraction with lixto. In Proceedings of the Conference on Very Large Databases (VLDB), 2001
40. Doorenbos R.B., Etzioni O., and Weld D.S. A scalable comparison-shopping agent for the world-wide web. In Johnson W.L. and Hayes-Roth B., editors, Proceedings of the International Conference on Autonomous Agents, pp. 39-48, Marina del Rey, CA, USA, ACM, 1997
41. Crescenzi V., Mecca G., and Merialdo P. Roadrunner: Towards automatic data extraction from large web sites. In Proceedings of the Conference on Very Large Databases (VLDB), pp. 109-118, 2001
42. Van Bemmel J.H. and Musen M.A., editors. Handbook of Medical Informatics. Springer, Berlin Heidelberg New York, 1997
43. Cincinnati Children's Hospital Medical Center. Evidence based clinical practice guideline for children with acute bacterial sinusitis in children 1 to 18 years of age. Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 2001
44. Kaiser K. LASSIE - Modeling Treatment Processes Using Information Extraction. PhD thesis, Institute of Software Technology & Interactive Systems, Vienna University of Technology, 2005
45. Seyfang A., Kosara R., and Miksch S. Asbru 7.3 Reference Manual. Technical Report Asgaard-TR-2002-1, Institute of Software Technology & Interactive Systems, Vienna University of Technology, Vienna, Austria, Europe, 2002
46. Lehnert W., Cardie C., Fisher D., McCarthy J., Riloff E., and Soderland S. Evaluating an information extraction system. Journal of Integrated Computer- Aided Engineering, 1(6), 1994