Species-specific evolution of the FcR family in endothermic vertebrates

Immunogenetics

Volumn 59, Issue 6, 2007, Pages 493-506

  Fayngerts, Svetlana A ^a   Najakshin, Alexander M ^a   Taranin, Alexander V ^a  

^a INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

Author keywords

Domain shuffling; FcR family; Species specific evolution

Indexed keywords

CELL SURFACE RECEPTOR; FC RECEPTOR;

ARTICLE; BIOINFORMATICS; CHICKEN; COMPUTER MODEL; DOG; EXON; GENE; GENE EXPRESSION; GENETIC RECOMBINATION; GENOME; HUMAN; LYMPHOID TISSUE; MAMMAL; MARSUPIAL; MOLECULAR CLONING; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPOSSUM; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FAMILY; SOUTHERN BLOTTING; SPECIES DIFFERENCE; VERTEBRATE;

ANIMALS; CHICKENS; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; DOGS; EVOLUTION; HUMANS; OPOSSUMS; PHYLOGENY; RECEPTORS, FC; SEQUENCE ALIGNMENT; SPECIES SPECIFICITY; VARIATION (GENETICS);

AVES; CANIS FAMILIARIS; EUTHERIA; MAMMALIA; METATHERIA; MONODELPHIS; PRIMATES; RODENTIA; VERTEBRATA;

EID: 34247560701     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00251-007-0208-8     Document Type: Article

References (49)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Burge C, Karlin S (1997) Prediction of complete gene structures in human genomic DNA. J Mol Biol 268:78-94
3. Chikaev NA, Bykova EA, Najakshin AM, Mechetina LV, Volkova OY, Peklo MM, Shevelev AY, Vlasik TN, Roesch A, Vogt T, Taranin AV (2005) Cloning and characterization of the human FCRL2 gene. Genomics 85:264-272
4. Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156-159
5. Daeron M (1997) Fc receptor biology. Annu Rev Immunol 5:203-234
6. Davis RS, Wang YH, Kubagawa H, Cooper MD (2001) Identification of a family of Fc receptor homologs with preferential B cell expression. Proc Natl Acad Sci USA 98:9772-9777
7. Davis RS, Dennis G Jr, Odom MR, Gibson AW, Kimberly RP, Burrows PD, Cooper MD (2002a) Fc receptor homologs: newest members of a remarkably diverse Fc receptor gene family. Immunol Rev 190:123-136
8. Davis RS, Li H, Chen CC, Wang YH, Cooper MD, Burrows PD (2002b) Definition of an Fc receptor-related gene (FcRX) expressed in human and mouse B cells. Int Immunol 14:1075-1083
9. Davis RS, Stephan RP, Chen C-C, Dennis G Jr, Cooper MD (2004) Differential B cell expression of mouse Fc receptor homologs. Int Immunol 16:1343-1353
10. Davis RS, Ehrhardt GR, Leu CM, Hirano M, Cooper MD (2005) An extended family of Fc receptor relatives. Eur J Immunol 35:674-680
11. Ehrhardt GR, Davis RS, Hsu JT, Leu CM, Ehrhardt A, Cooper MD (2003) The inhibitory potential of Fc receptor homolog 4 on memory B cells. Proc Natl Acad Sci USA 100:13489-13494
12. Ehrhardt GR, Hsu JT, Gartland L, Leu CM, Zhang S, Davis RS, Cooper MD (2005) Expression of the immunoregulatory molecule FcRH4 defines a distinctive tissue-based population of memory B cells. J Exp Med 202:783-791
13. Ershova SA, Peklo MM, Shevelev AY, Najakshim AM, Mechetina LV, Volkova OY, Chikaev NA, Vlasik TN, Taranin AV (2004) IFGPG: a novel human member of the IFGP/IRTA/FcRH family that is selectively expressed by CD8 T and NK cells. Clin Invest Med Proceedings of the 12th International Congress of Immunology, July 18-23, 2004, Montreal, Canada 27(4):10C
14. Ewald S, Freedman L, Sanders BG (1976) EA rosette-forming lymphoid cells in chickens: specificity of the Fc receptor and its relationship to other surface antigens. Immunology 31:847-854
15. Facchetti F, Cella M, Festa S, Fremont DH, Colonna M (2002) An unusual Fc receptor-related protein expressed in human centroblasts. Proc Natl Acad Sci USA 99:3776-3781
16. Falini B, Tiacci E, Pucciarini A, Bigerna B, Kurth J, Hatzivassiliou G, Droetto S, Galletti BV, Gambacorta M, Orazi A, Pasqualucci L, Miller I, Kuppers R, Dalla-Favera R, Cattoretti G (2003) Expression of the IRTA1 receptor identifies intraepithelial and subepithelial marginal zone B cells of the mucosa-associated lymphoid tissue (MALT). Blood 102:3684-3692
17. Guselnikov SV, Ershova SA, Mechetina LV, Najakshin AM, Volkova OY, Alabyev BY, Taranin AV (2002) A family of highly diverse human and mouse genes structurally links leukocyte FcR, gp42 and PECAM-1. Immunogenetics 54:87-95
18. Guselnikov SV, Erilova AY, Najakshin AM, Cohen N, Rober J, Taranin AV (2004) FcR-like genes in the amphibian Xenopus: species-specific expansion, structure diversity, and developmental expression. Clin Invest Med. Proceedings of the 12th International Congress of Immunology, July 18-23, 2004, Montreal, Canada 27(4):82C
19. Hatzivassiliou G, Miller I, Takizawa J, Palanisamy N, Rao PH, Iida S, Tagawa S, Taniwaki M, Russo J, Neri A, Cattoretti G, Clynes R, Mendelsohn C, Chaganti RS, Dalla-Favera R (2001) IRTA1 and IRTA2, novel immunoglobulin superfamily receptors expressed in B cells and involved in chromosome 1q21 abnormalities in B cell malignancy. Immunity 14:277-289
20. Hillier LW et al. (2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432:695-716
21. Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, Durbin R, Eyras E, Gilbert J, Hammond M, Huminiecki L, Kasprzyk A, Lehvaslaiho H, Lijnzaad P, Melsopp C, Mongin E, Pettett R, Pocock M, Potter S, Rust A, Schmidt E, Searle S, Slater G, Smith J, Spooner W, Stabenau A, Stalker J, Stupka E, Ureta-Vidal A, Vastrik I, Clamp M (2002) The Ensembl genome database project. Nucleic Acids Res 30:38-41
22. Hughes AL (1996) Gene duplication and recombination in the evolution of mammalian Fc receptors. J Mol Evol 43:4-10
23. Imboden JB, Eriksson EC, McCutcheon M, Reynolds CW, Seaman WE (1989) Identification and characterization of a cell-surface molecule that is selectively induced on rat lymphokine-activated killer cells. J Immunol 143:3100-3103
24. Kumar S, Tamura K, Nei M (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
25. Leu CM, Davis RS, Gartland LA, Fine WD, Cooper MD(2005) FcRH1: an activation coreceptor on human B cells. Blood 105:1121-1126
26. Maltais LJ, Lovering RC, Taranin AV, Colonna M, Ravetch JV, Dalla-Favera R, Burrows PD, Cooper MD, Davis RS (2006) New nomenclature for Fc receptor-likemolecules. Nat Immunol 7:431-432
27. Manghi MA, Venturiello SM, Gutierrez MI, Etchevierrigaray M, Margni RA (1987) Isolation and partial characterization of biologically active Fc receptor of chicken red cells. Biochim Biophys Acta 923:381-388
28. Masuda K, Davis RS, Maruyama T, Zhang J, He T, Cooper MD, O-Wang J, Burrows PD (2005) FcRY, an Fc receptor related gene differentially expressed during B lymphocyte development and activation. Gene 363:32-40
29. Mechetina LV, Najakshin AM, Alabyev BY, Chikaev NA, Taranin AV (2002a) Identification of CD16-2, a novel mouse receptor homologous to CD16/Fc gamma RIII. Immunogenetics 54:463-468
30. Mechetina LV, Najakshin AM, Volkova OY, Guselnikov SV, Faizulin RZ, Alabyev BY, Chikaev NA, Vinogradova MS, Taranin AV (2002b) FCRL, a novel member of the leukocyte Fc receptor family possesses unique structural features. Eur J Immunol 32:87-96
31. Milanesi L, D'Angelo D, Rogozin IB (1999) GeneBuilder: interactive in silico prediction of gene structure. Bioinformatics 15:612-621
32. Miller I, Hatzivassiliou G, Cattoretti G, Mendelsohn C, Dalla-Favera R (2002) IRTAs: a new family of immunoglobulin-like receptors differentially expressed in B cells. Blood 99:2662-2669
33. Nakamura R, Sato Y, Takagi K, Sasaki N, Sawada J, Kitani S, Teshima R (2003) Presence and primary sequence of a highaffinity IgG receptor on canine mastocytoma (CM-MC) cells. Immunogenetics 55:271-274
34. Nakayama Y, Weissman SM, Bothwell AL (2001) BXMAS1 identifies a cluster of homologous genes differentially expressed in B cells. Biochem Biophys Res Commun 285:830-837
35. Nimmerjahn F, Bruhns P, Horiuchi K, Ravetch JV (2005) FcgammaRIV: a novel FcR with distinct IgG subclass specificity. Immunity 23:41-51
36. Pearson WR (1990) Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol 183:63-98
37. Polson AG, Zheng B, Elkins K, Chang W, Du C, Dowd P, Yen L, Tan C, Hongo JA, Koeppen H, Ebens A (2006) Expression pattern of the human FcRH/IRTA receptors in normal tissue and in B-chronic lymphocytic leukemia. Int Immunol 18:1363-1373
38. Ravetch JV, Kinet J-P (1991) Fc receptors. Annu Rev Immunol 9:457-492
39. Sambrook T, Fritsch EF, Maniatis T (eds) (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Plainview, NY
40. Smith J, Speed D, Law AS, Glass EJ, Burt DW (2004) In-silico identification of chicken immune-related genes. Immunogenetics 56:122-33
41. Thanaraj TA, Robinson AJ (2000) Prediction of exact boundaries of exons. Brief Bioinform 1:343-356
42. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
43. Tressler RL, Roth TF (1987) IgG receptors on the embryonic chick yolk sac. J Biol Chem 262:15406-15412
44. Vernersson M, Aveskogh M, Munday B, Hellman L (2002) Evidence for an early appearance of modern post-switch immunoglobulin isotypes in mammalian evolution (II); cloning of IgE, IgG1 and IgG2 from a monotreme, the duck-billed platypus, Ornithorhynchus anatinus. Eur J Immunol 32:2145-2155
45. Warr GW, Magor KE, Higgins DA (1995) IgY: clues to the origins of modern antibodies. Immunol Today 16:392-398
46. West AP Jr, Herr AB, Bjorkman PJ (2004) The chicken yolk sac IgY receptor, a functional equivalent of the mammalian MHC-related Fc receptor, is a phospholipase A2 receptor homolog. Immunity 20:601-610
47. Wilson TJ, Colonna M (2005) A new Fc receptor homolog, FREB2, found in germinal center B cells. Genes Immun 6:341-346
48. Xu MJ, Zhao R, Zhao ZJ (2001) Molecular cloning and characterization of SPAP1, an inhibitory receptor. Biochem Biophys Res Commun 280:768-775
49. Xu MJ, Zhao R, Cao H, Zhao ZJ (2002) SPAP2, an Ig family receptor containing both ITIMs and ITAMs. Biochem Biophys Res Commun 293:1037-1046