Phylogeny of primate T lymphotropic virus type 1 (PTLV-1) including various new Asian and African non-human primate strains

Infection, Genetics and Evolution

Volumn 7, Issue 3, 2007, Pages 374-381

  Van Dooren, Sonia ^a   Verschoor, Ernst J ^b   Fagrouch, Zahra ^b   Vandamme, Anne Mieke ^a  

^a REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

^b BIOMEDICAL PRIMATE RESEARCH CENTRE   (Netherlands)

Author keywords

Chimpanzee; Gorilla; Macaque; Orang utan; Phylogeny; PTLV; Red tailed guenon; Siamang; STLV 1

Indexed keywords

AFRICA; ARTICLE; ASIA; CERCOPITHECUS; CHIMPANZEE; CLADISTICS; CONTROLLED STUDY; GENE CLUSTER; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC ASSOCIATION; GEOGRAPHICAL VARIATION (SPECIES); GORILLA; MACACA; NONHUMAN; NUCLEOTIDE SEQUENCE; ORANG UTAN; PHYLOGENY; PRIMATE DISEASE; PRIORITY JOURNAL; RETROVIRUS; RETROVIRUS INFECTION; VIRUS GENE; VIRUS IDENTIFICATION; VIRUS STRAIN; VIRUS TRANSMISSION; ZOONOSIS;

AFRICA; ANIMALS; ASIA; DELTARETROVIRUS INFECTIONS; GENES, ENV; HUMAN T-LYMPHOTROPIC VIRUS 1; MOLECULAR SEQUENCE DATA; PHYLOGENY; PRIMATE DISEASES; PRIMATE T-LYMPHOTROPIC VIRUS 1; PRIMATES; SIMIAN T-LYMPHOTROPIC VIRUS 1; TERMINAL REPEAT SEQUENCES; ZOONOSES;

CERCOPITHECUS ASCANIUS; GORILLA GORILLA GORILLA; HUMAN T-LYMPHOTROPIC VIRUS 1; MACACA MAURA; MACACA NIGRA; MACACA SYLVANUS; PAN; PONGO PYGMAEUS; PRIMATES; SIMIAN T-LYMPHOTROPIC VIRUS 1; SIMIAN T-LYMPHOTROPIC VIRUS 3; SYMPHALANGUS SYNDACTYLUS;

EID: 34247555969     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2006.06.003     Document Type: Article

References (39)

1. Cavalli-Sforza L.L., Menozzi P., and Piazza A. The History and Geography of Human Genes (1994), Princeton University Press, Princeton, NJ
2. Courgnaud V., Van Dooren S., Liegeois F., Pourrut X., Abela B., Loul S., Mpoudi-Ngole E., Vandamme A., Delaporte E., and Peeters M. Simian T-cell leukemia virus (STLV) infection in wild primate populations in Cameroon: evidence for dual STLV type 1 and type 3 infection in agile mangabeys (Cercocebus agilis). J. Virol. 78 (2004) 4700-4709
3. Delson E. Fossil macaques, phyletic relationships and a scenario of deployment. The Macaques: Studies in Ecology, Bahaviour, and Evolution (1980), Van Nostrand Reinhold Co., New York pp. 10-30
4. Delson E. The oldest monkeys in Asia. Proceedings of the International Symposium: Evolution of Asian Primates (1996), Freude & Kyoto University Primate Research Institute, Inuyama, Aichi, Japan 40 (abstract)
5. Fa J.E. The genus Macaca-a review of taxonomy and evolution. Mammal Rev. 19 (1989) 45-81
6. Gessain A., and Mahieux R. Epidemiology, origins and genetic diversity of HTLV-1 retrovirus and STLV-1 simian affiliated retroviruses. Bull. Soc. Pathol. Exot. 93 (2000) 163-171
7. Gessain A., Yanagihara R., Franchini G., Garruto R.M., Jenkins C.L., Ajdukiewicz A.B., Gallo R.C., and Gajdusek D.C. Highly divergent molecular variants of human T-lymphotropic virus type-I from isolated populations in Papua-New-Guinea and the Solomon-Islands. Proc. Natl. Acad. Sci. U.S.A. 88 (1991) 7694-7698
8. Groves C.P. Speciation in Macaca: the view from Sulawesi. The Macacques: Studies in Ecology, Behavior and Evolution (1980), Van Nostrand Reinhold Co., New York pp. 84-124
9. Ibrahim F., Dethe G., and Gessain A. Isolation and characterization of a new simian T-cell leukemia-virus type-1 from naturally infected celebes macaques (Macaca tonkeana)-complete nucleotide-sequence and phylogenetic relationship with the Australo-Melanesian human T-cell leukemia-virus type-1. J. Virol. 69 (1995) 6980-6993
10. Ibuki K., Ido E., Setiyaningsih S., Yamashita M., Agus L.R.P., Takehisa J., Miura T., Dondin S., and Hayami M. Isolation of STLV-I from orangutan, a great ape species in southeast Asia, and its relation to other HTLV-Is/STLV-Is. Jpn. J. Cancer Res. 88 (1997) 1-4
11. Ishikawa K., Fukasawa M., Tsujimoto H., Else J.G., Isahakia M., Ubhi N.K., Ishida T., Takenaka O., Kawamoto Y., and Shotake T. Serological survey and virus isolation of simian T-cell leukemia/T-lymphotropic virus type I (STLV-I) in non-human primates in their native countries. Int. J. Cancer 40 (1987) 233-239
12. Koralnik I.J., Boeri E., Saxinger W.C., Lomonico A., Fullen J., Gessain A., Guo H.G., Gallo R.C., Markham P., Kalyanaraman V., Hirsch V., Allan J., Murthy K., Alford P., Slattery J.P., Obrien S.J., and Franchini G. Phylogenetic associations of human and simian T-cell leukemia/lymphotropic virus type-I strains-evidence for interspecies transmission. J. Virol. 68 (1994) 2693-2707
13. Leendertz F.H., Junglen S., Boesch C., Formenty P., Couacy-Hymann E., Courgnaud V., Pauli G., and Ellerbrok H. High variety of different simian T-cell leukemia virus type 1 strains in chimpanzees (Pan troglodytes verus) of the Tai National Park, Cote d'Ivoire. J. Virol. 78 (2004) 4352-4356
14. Liu H.F., Goubau P., Van Brussel M., Desmyter J., and Vandamme A.M. Phylogenetic analysis of a simian T lymphotropic virus type I from a hamadryas baboon. AIDS Res. Hum. Retroviruses 13 (1997) 1545-1548
15. Liu H.F., Goubau P., Van Brussel M., Van Laethem K., Chen Y.C., Desmyter J., and Vandamme A.M. The three human T-lymphotropic virus type I subtypes arose from three geographically distinct simian reservoirs. J. Gen. Virol. 77 Pt. 2 (1996) 359-368
16. Mahieux R., Chappey C., Georges-Courbot M.C., Dubreuil G., Mauclere P., Georges A., and Gessain A. Simian T-cell lymphotropic virus type 1 from Mandrillus sphinx as a simian counterpart of human T-cell lymphotropic virus type 1 subtype D. J. Virol. 72 (1998) 10316-10322
17. Mahieux R., Chappey C., Meertens L., Mauclere P., Lewis J., and Gessain A. Molecular characterization and phylogenetic analyses of a new simian T cell lymphotropic virus type 1 in a wild-caught African baboon (Papio anubis) with an indeterminate STLV type 2-like serology. AIDS Res. Hum. Retroviruses 16 (2000) 2043-2048
18. Mahieux R., PeconSlattery J., and Gessain A. Molecular characterization and phylogenetic analyses of a new, highly divergent simian T-cell lymphotropic virus type 1 (STLV-1marc1) in Macaca arctoides. J. Virol. 71 (1997) 6253-6258
19. Meertens L., Rigoulet J., Mauclere P., VanBeveren M., Chen G.M., Diop O., Dubreuil G., Georges-Goubot M.C., Berthier J.L., Lewis J., and Gessain A. Molecular and phylogenetic analyses of 16 novel simian T cell leukemia virus type 1 from Africa: close relationship of STLV-1 from Allenopithecus nigroviridis to HTLV-1 subtype B strains. Virology 287 (2001) 275-285
20. Nerrienet E., Meertens L., Kfutwah A., Foupouapouognigni Y., Ayouba A., and Gessain A. Simian T cell leukaemia virus type I subtype B in a wild-caught gorilla (Gorilla gorilla gorilla) and chimpanzee (Pan troglodytes vellerosus) from Cameroon. J. Gen. Virol. 85 (2004) 25-29
21. Nerrienet E., Meertens L., Kfutwah A., Foupouapouognigni Y., and Gessain A. Molecular epidemiology of simian T-lymphotropic virus (STLV) in wild-caught monkeys and apes from Cameroon: a new STLV-1, related to human T-lymphotropic virus subtype F, in a Cercocebus agilis. J. Gen. Virol. 82 (2001) 2973-2977
22. Niphuis H., Verschoor E.J., Bontjer I., Peeters M., and Heeney J.L. Reduced transmission and prevalence of simian T-cell lymphotropic virus in a closed breeding colony of chimpanzees (Pan troglodytes verus). J. Gen. Virol. 84 (2003) 615-620
23. Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
24. Richards A.L., Giri A., Iskandriati D., Pamungkas J., Sie A., Rosen L., Anthony R.L., and Franchini G. Simian T-lymphotropic virus type I infection among wild-caught Indonesian pig-tailed macaques (Macaca nemestrina). J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 19 (1998) 542-545
25. Saksena N.K., Herve V., Durand J.P., Leguenno B., Diop O.M., Digoutte J.P., Mathiot C., Muller M.C., Love J.L., Dube S., Sherman M.P., Benz P.M., Erensoy S., Galatluong A., Galat G., Paul B., Dube D.K., Barresinoussi F., and Poiesz B.J. Seroepidemiologic, molecular, and phylogenetic analyses of simian T-cell leukemia viruses (Stlv-I) from various naturally infected monkey species from Central and Western Africa. Virology 198 (1994) 297-310
26. Salemi M., Van Dooren S., Audenaert E., Delaporte E., Goubau P., Desmyter J., and Vandamme A.M. Two new human T-lymphotropic virus type I phylogenetic subtypes in seroindeterminates, a Mbuti pygmy and a Gabonese, have closest relatives among African STLV-I strains. Virology 246 (1998) 277-287
27. Salemi M., Van Dooren S., and Vandamme A.-M. Origin and evolution of human and simian T-cell lymphotropic viruses. AIDS Rev. 1 (1999) 131-139
28. Slattery J.P., Franchini G., and Gessain A. Genomic evolution, patterns of global dissemination, and interspecies transmission of human and simian T-cell leukemia lymphotropic viruses. Genome Res. 9 (1999) 525-540
29. Swofford, D.L., 1998. PAUP*: phylogentic analysis using parsimony (*and other methods) (4.0beta 10). Sinauer Associates, Inc., Sunderland, Massachusetts.
30. Vandamme A.M., Salemi M., and Desmyter J. The simian origins of the pathogenic human T-cell lymphotropic virus type I. Trends Microbiol. 6 (1998) 477-483
31. Van Dooren S., Gotuzzo E., Salemi M., Watts D., Audenaert E., Duwe S., Ellerbrok H., Grassmann R., Hagelberg E., Desmyter J., and Vandamme A.M. Evidence for a post-Columbian introduction of human T-cell lymphotropic virus [type I] [corrected] in Latin America. J. Gen. Virol. 79 (1998) 2695-2708 (Erratum in: J. Gen. Virol. 80 (1999) 1087)
32. Van Dooren S., Meertens L., Lemey P., Gessain A., and Vandamme A. Full genome analysis of a highly divergent simian T-cell lymphotropic virus type-1 (STLV-1) strain in Macaca arctoides. J. Gen. Virol. 86 (2005) 1953-1959
33. Van Dooren S., Salemi M., and Vandamme A.M. Dating the origin of the African human T-cell lymphotropic virus type-I (HTLV-I) subtypes. Mol. Biol. Evol. 18 (2001) 661-671
34. Van Dooren S., Shanmugam V., Bhullar V., Parekh B., Vandamme A.M., Heneine W., and Switzer W.M. Identification in gelada baboons (Theropithecus gelada) of a distinct simian T-cell lymphotropic virus type 3 with a broad range of Western blot reactivity. J. Gen. Virol. 85 (2004) 507-519
35. Verschoor E.J., Warren K.S., Niphuis H., Heriyanto, Swan R.A., and Heeney J.L. Characterization of a simian T-lymphotropic virus from a wild-caught orangutan (Pongo pygmaeus) from Kalimantan, Indonesia. J. Gen. Virol. 79 (1998) 51-55
36. Voevodin A., Samilchuk E., Schatzl H., Boeri E., and Franchini G. Interspecies transmission of macaque simian T-cell leukemia/lymphoma virus type 1 in baboons resulted in an outbreak of malignant lymphoma. J. Virol. 70 (1996) 1633-1639
37. Voevodin A.F., Johnson B.K., Samilchuk E.I., Stone G.A., Druilhet W.J., Greer R., and Gibbs Jr. C.J. Phylogenetic analysis of simian T-lymphotropic virus type I (STLV-I) in common chimpanzees (Pan troglodytes): evidence for interspecies transmission of the virus between chimpanzees and humans in Central Africa. Virology 238 (1997) 212-220
38. Wolfe N.D., Switzer W.M., Carr J.K., Bhullar V.B., Shanmugam V., Tamoufe U., Prosser A.T., Torimiro J.N., Wright A., Mpoudi-Ngole E., McCutchan F.E., Birx D.L., Folks T.M., Burke D.S., and Heneine W. Naturally acquired simian retrovirus infections in central African hunters. Lancet 363 (2004) 932-937
39. Xia X., and Xie Z. DAMBE: data analysis in molecular biology and evolution. J. Hered. 92 (2001) 371-373