메뉴 건너뛰기




Volumn 40, Issue 1, 2007, Pages 29-44

Selection of relevant genes in cancer diagnosis based on their prediction accuracy

Author keywords

Cancer diagnosis; Classification; DNA microarray; Gene selection; Supervised learning

Indexed keywords

COMPUTER SIMULATION; DIAGNOSIS; DNA; PATHOLOGY; SUPERVISED LEARNING; TUMORS;

EID: 34247535444     PISSN: 09333657     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.artmed.2006.06.002     Document Type: Article
Times cited : (28)

References (38)
  • 1
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene-expression patterns with a complementary-DNA microarray
    • Schena M., Shalon D., Davis R.W., and Brown P.O. Quantitative monitoring of gene-expression patterns with a complementary-DNA microarray. Science 270 (1995) 467-470
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 2
    • 20144376345 scopus 로고    scopus 로고
    • Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
    • Yanai I., Benjamin H., Shmoish M., Chalifa-Caspi V., Shklar M., Ophir R., et al. Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics 21 5 (2005) 650-659
    • (2005) Bioinformatics , vol.21 , Issue.5 , pp. 650-659
    • Yanai, I.1    Benjamin, H.2    Shmoish, M.3    Chalifa-Caspi, V.4    Shklar, M.5    Ophir, R.6
  • 3
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
    • Golub T.R., Slonim D.K., Tamayo P., Huard C., Gaasenbeek M., Mesirov J.P., et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286 (1999) 531-537
    • (1999) Science , vol.286 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3    Huard, C.4    Gaasenbeek, M.5    Mesirov, J.P.6
  • 4
    • 0036534202 scopus 로고    scopus 로고
    • DNA microarrays in clinical oncology
    • Ramaswamy S., and Golub T.R. DNA microarrays in clinical oncology. J Clin Oncol 20 (2001) 1932-1941
    • (2001) J Clin Oncol , vol.20 , pp. 1932-1941
    • Ramaswamy, S.1    Golub, T.R.2
  • 5
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    • Alon U., Barkai N., Notterman D.A., Gish K., Ybarra S., Mack D., et al. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc Natl Acad Sci 96 (1999) 6745-6750
    • (1999) Proc Natl Acad Sci , vol.96 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3    Gish, K.4    Ybarra, S.5    Mack, D.6
  • 8
    • 2442684455 scopus 로고    scopus 로고
    • Gene expression profiles and molecular markers to predict recurrence of Dukes' B colon cancer
    • Wang Y., Jatkoe T., Zhang Y., Mutch M.G., Talantov D., Jiang J., et al. Gene expression profiles and molecular markers to predict recurrence of Dukes' B colon cancer. J Clin Oncol 22 9 (2004) 1564-1571
    • (2004) J Clin Oncol , vol.22 , Issue.9 , pp. 1564-1571
    • Wang, Y.1    Jatkoe, T.2    Zhang, Y.3    Mutch, M.G.4    Talantov, D.5    Jiang, J.6
  • 9
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using support vector machines
    • Guyon I., Weston J., Barnhill S., and Vapnik V. Gene selection for cancer classification using support vector machines. Mach Learn 46 (2002) 389-422
    • (2002) Mach Learn , vol.46 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 11
    • 2942602999 scopus 로고    scopus 로고
    • Entropy-based gene ranking without selection bias for the predictive classification of microarray data
    • Furlanello C., Serafini M., Merler S., and Jurman G. Entropy-based gene ranking without selection bias for the predictive classification of microarray data. BMC Bioinformatics 4 1 (2003) 54
    • (2003) BMC Bioinformatics , vol.4 , Issue.1 , pp. 54
    • Furlanello, C.1    Serafini, M.2    Merler, S.3    Jurman, G.4
  • 12
    • 25444500985 scopus 로고    scopus 로고
    • Evaluation of gene importance in microarray data based upon probability of selection
    • Fu L.M., and Fu-Liu C.S. Evaluation of gene importance in microarray data based upon probability of selection. BMC Bioinformatics 6 (2005) 67
    • (2005) BMC Bioinformatics , vol.6 , pp. 67
    • Fu, L.M.1    Fu-Liu, C.S.2
  • 14
    • 0038237368 scopus 로고    scopus 로고
    • Estimating dataset size requirements for classifying dna microarray data
    • Mukherjee S., Tamayo P., Rogers S., Rifkin R., Engle A., Campbell C., et al. Estimating dataset size requirements for classifying dna microarray data. J Comp Biol 10 (2003) 119-142
    • (2003) J Comp Biol , vol.10 , pp. 119-142
    • Mukherjee, S.1    Tamayo, P.2    Rogers, S.3    Rifkin, R.4    Engle, A.5    Campbell, C.6
  • 15
    • 12744260155 scopus 로고    scopus 로고
    • How many samples are needed to build a classifier: a general sequential approach
    • Fu W.J., Dougherty E.R., Mallick B., and Carroll R.J. How many samples are needed to build a classifier: a general sequential approach. Bioinformatics 21 1 (2005) 63-70
    • (2005) Bioinformatics , vol.21 , Issue.1 , pp. 63-70
    • Fu, W.J.1    Dougherty, E.R.2    Mallick, B.3    Carroll, R.J.4
  • 16
    • 3142592326 scopus 로고    scopus 로고
    • Extreme value distribution based gene selection criteria for discriminant microarray data analysis using logistic regression
    • Li W., Sun F., and Grosse I. Extreme value distribution based gene selection criteria for discriminant microarray data analysis using logistic regression. J Comp Biol 11 2-3 (2004) 215-226
    • (2004) J Comp Biol , vol.11 , Issue.2-3 , pp. 215-226
    • Li, W.1    Sun, F.2    Grosse, I.3
  • 19
    • 0034419669 scopus 로고    scopus 로고
    • Regularization networks and support vector machines
    • Evgeniou T., Pontil M., and Poggio T. Regularization networks and support vector machines. Adv Comp Math 13 1 (2000) 1-50
    • (2000) Adv Comp Math , vol.13 , Issue.1 , pp. 1-50
    • Evgeniou, T.1    Pontil, M.2    Poggio, T.3
  • 20
    • 0037076322 scopus 로고    scopus 로고
    • Selection bias in gene extraction on the basis of microarray gene-expression data
    • Ambroise C., and McLachlan G.J. Selection bias in gene extraction on the basis of microarray gene-expression data. Proc Natl Acad Sci 99 (2002) 6562-6566
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 6562-6566
    • Ambroise, C.1    McLachlan, G.J.2
  • 22
    • 10044277812 scopus 로고    scopus 로고
    • Svm vs regularized least squares classification
    • Kittler J., Petrou M., and Nixon M. (Eds), IEEE Computer Society, Los Alamitos, CA, USA
    • Zhang P., and Peng J. Svm vs regularized least squares classification. In: Kittler J., Petrou M., and Nixon M. (Eds). Proceedings of the 17th international conference on pattern recognition (ICPR '04) (2004), IEEE Computer Society, Los Alamitos, CA, USA 176-179
    • (2004) Proceedings of the 17th international conference on pattern recognition (ICPR '04) , pp. 176-179
    • Zhang, P.1    Peng, J.2
  • 23
  • 24
    • 26944451288 scopus 로고    scopus 로고
    • Permutation tests for classification
    • Auer P., and Meir P. (Eds), Springer Berlin, Heidelberg
    • Golland P., Liang F., Mukherjee S., and Panchenko D. Permutation tests for classification. In: Auer P., and Meir P. (Eds). Lecture notes in computer science vol. 3559 (2005), Springer Berlin, Heidelberg 501-515
    • (2005) Lecture notes in computer science , vol.3559 , pp. 501-515
    • Golland, P.1    Liang, F.2    Mukherjee, S.3    Panchenko, D.4
  • 26
    • 0036136472 scopus 로고    scopus 로고
    • Non-parametric permutation tests for functional neuroimaging: a primer with examples
    • Nichols T.E., and Holmes A.P. Non-parametric permutation tests for functional neuroimaging: a primer with examples. Hum Brain Mapp 15 (2001) 1-25
    • (2001) Hum Brain Mapp , vol.15 , pp. 1-25
    • Nichols, T.E.1    Holmes, A.P.2
  • 29
    • 0003281852 scopus 로고
    • On estimation of characters obtained in statistical procedure of recognition
    • Luntz A., and Brailovsky V. On estimation of characters obtained in statistical procedure of recognition. Technicheskaya Kibernetica (1969) 3
    • (1969) Technicheskaya Kibernetica , pp. 3
    • Luntz, A.1    Brailovsky, V.2
  • 30
    • 0035300437 scopus 로고    scopus 로고
    • Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays
    • Notterman D.A., Alon U., Sierk A.J., and Levine A.J. Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays. Cancer Res 61 (2001) 3124-3130
    • (2001) Cancer Res , vol.61 , pp. 3124-3130
    • Notterman, D.A.1    Alon, U.2    Sierk, A.J.3    Levine, A.J.4
  • 31
    • 0036772522 scopus 로고    scopus 로고
    • Bayesian automatic relevance determination algorithms for classifying gene expression data
    • Li Y., Campbell C., and Tipping M. Bayesian automatic relevance determination algorithms for classifying gene expression data. Bioinformatics 18 (2002) 1332-1339
    • (2002) Bioinformatics , vol.18 , pp. 1332-1339
    • Li, Y.1    Campbell, C.2    Tipping, M.3
  • 32
    • 0034813673 scopus 로고    scopus 로고
    • Expression of cyclin e and cyclin-dependent kinase 2 correlates with metastasis and prognosis in colorectal carcinoma
    • Li J.Q., Miki H., Ohmori M., Wu F., and Funamoto Y. Expression of cyclin e and cyclin-dependent kinase 2 correlates with metastasis and prognosis in colorectal carcinoma. Hum Pathol 32 (2001) 945-953
    • (2001) Hum Pathol , vol.32 , pp. 945-953
    • Li, J.Q.1    Miki, H.2    Ohmori, M.3    Wu, F.4    Funamoto, Y.5
  • 33
    • 0030038519 scopus 로고    scopus 로고
    • Non-steroidal antiinflammatory drugs inhibit the proliferation of colon adenocarcinoma cells: effects on cell cycle and apoptosis
    • Shiff S.J., Koutsos M.I., Qiao L., and Rigas B. Non-steroidal antiinflammatory drugs inhibit the proliferation of colon adenocarcinoma cells: effects on cell cycle and apoptosis. Exp Cell Res 222 (1996) 179-188
    • (1996) Exp Cell Res , vol.222 , pp. 179-188
    • Shiff, S.J.1    Koutsos, M.I.2    Qiao, L.3    Rigas, B.4
  • 34
    • 18244407517 scopus 로고    scopus 로고
    • Cd44 promotes resistance to apoptosis in murine colonic epithelium
    • Lakshman M., Subramaniam V., Wong S., and Jothy S. Cd44 promotes resistance to apoptosis in murine colonic epithelium. J Cell Physiol 203 3 (2005) 583-588
    • (2005) J Cell Physiol , vol.203 , Issue.3 , pp. 583-588
    • Lakshman, M.1    Subramaniam, V.2    Wong, S.3    Jothy, S.4
  • 35
    • 0031870975 scopus 로고    scopus 로고
    • Down-regulation of the down-regulated in adenoma (dra) gene correlates with colon tumor progression
    • Antalis T.M., Reeder J.A., Gotley D.C., Byeon M.K., Walsh M.D., Henderson K.W., et al. Down-regulation of the down-regulated in adenoma (dra) gene correlates with colon tumor progression. Clin Cancer Res 4 (1998) 1857-1863
    • (1998) Clin Cancer Res , vol.4 , pp. 1857-1863
    • Antalis, T.M.1    Reeder, J.A.2    Gotley, D.C.3    Byeon, M.K.4    Walsh, M.D.5    Henderson, K.W.6
  • 36
    • 0033808421 scopus 로고    scopus 로고
    • Expression of carbonic anhydrase i or ii and correlation to clinical aspects of colorectal cancer
    • Bekku S., Mochizuki H., Yamamoto T., Ueno H., Takayama E., and Tadakuma T. Expression of carbonic anhydrase i or ii and correlation to clinical aspects of colorectal cancer. Hepatogastroenterology 47 (2000) 998-1001
    • (2000) Hepatogastroenterology , vol.47 , pp. 998-1001
    • Bekku, S.1    Mochizuki, H.2    Yamamoto, T.3    Ueno, H.4    Takayama, E.5    Tadakuma, T.6
  • 37
    • 0028836796 scopus 로고
    • Cell cycle regulation of metallothionein in human colonic cancer cells
    • Nagel W.W., and Vallee B.L. Cell cycle regulation of metallothionein in human colonic cancer cells. Proc Natl Acad Sci 17/92 2 (1995) 579-583
    • (1995) Proc Natl Acad Sci , vol.92 , Issue.2 , pp. 579-583
    • Nagel, W.W.1    Vallee, B.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.