-
1
-
-
0038752617
-
Computational design of receptor and sensor proteins with novel functions
-
Looger L L, Dwyer M A, Smith J J and Hellinga H W 2003 Computational design of receptor and sensor proteins with novel functions Nature 423 185-90
-
(2003)
Nature
, vol.423
, Issue.6936
, pp. 185-190
-
-
Looger, L.L.1
Dwyer, M.A.2
Smith, J.J.3
Hellinga, H.W.4
-
2
-
-
22644442838
-
Regulatable gene expression systems for gene therapy applications: Progress and future challenges
-
Goverdhana S, Puntel M, Xiong W, Zirger J M, Barcia C, Curtin J F, Soffer E B, Mondkar S, King G D and Hu J 2005 Regulatable gene expression systems for gene therapy applications: progress and future challenges Mol. Ther. 12 189-211
-
(2005)
Mol. Ther.
, vol.12
, Issue.2
, pp. 189-211
-
-
Goverdhana, S.1
Puntel, M.2
Xiong, W.3
Zirger, J.M.4
Barcia, C.5
Curtin, J.F.6
Soffer, E.B.7
Mondkar, S.8
King, G.D.9
Hu, J.10
-
5
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
Gardner T S, Cantor C R and Collins J J 2000 Construction of a genetic toggle switch in Escherichia coli Nature 403 339-42
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
6
-
-
3042741121
-
Engineered riboregulators enable post-transcriptional control of gene expression
-
Isaacs F J, Dwyer D J, Ding C, Pervouchine D D, Cantor C R and Collins J J 2004 Engineered riboregulators enable post-transcriptional control of gene expression Nat. Biotechnol. 22 841-7
-
(2004)
Nat. Biotechnol.
, vol.22
, Issue.7
, pp. 841-847
-
-
Isaacs, F.J.1
Dwyer, D.J.2
Ding, C.3
Pervouchine, D.D.4
Cantor, C.R.5
Collins, J.J.6
-
7
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz M B and Leibler S 2000 A synthetic oscillatory network of transcriptional regulators Nature 403 335-8
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
8
-
-
18344381476
-
A synthetic gene-metabolic oscillator
-
Fung E, Wong W W, Suen J K, Bulter T, Lee S G and Liao J C 2005 A synthetic gene-metabolic oscillator Nature 435 118-22
-
(2005)
Nature
, vol.435
, Issue.7038
, pp. 118-122
-
-
Fung, E.1
Wong, W.W.2
Suen, J.K.3
Bulter, T.4
Lee, S.G.5
Liao, J.C.6
-
9
-
-
0038241770
-
Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli
-
Atkinson M R, Savageau M A, Myers J T and Ninfa A J 2003 Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli Cell 113 597-607
-
(2003)
Cell
, vol.113
, Issue.5
, pp. 597-607
-
-
Atkinson, M.R.1
Savageau, M.A.2
Myers, J.T.3
Ninfa, A.J.4
-
10
-
-
14844358192
-
Ultrasensitivity and noise propagation in a synthetic transcriptional cascade
-
Hooshangi S, Thiberge S and Weiss R 2005 Ultrasensitivity and noise propagation in a synthetic transcriptional cascade Proc. Natl Acad. Sci. USA 102 3581-6
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, Issue.10
, pp. 3581-3586
-
-
Hooshangi, S.1
Thiberge, S.2
Weiss, R.3
-
11
-
-
0034212551
-
Engineering stability in gene networks by autoregulation
-
Becskei A and Serrano L 2000 Engineering stability in gene networks by autoregulation Nature 405 590-3
-
(2000)
Nature
, vol.405
, Issue.6786
, pp. 590-593
-
-
Becskei, A.1
Serrano, L.2
-
12
-
-
1942467023
-
Programmed population control by cell-cell communication and regulated killing
-
You L, Cox R S 3rd, Weiss R and Arnold F H 2004 Programmed population control by cell-cell communication and regulated killing Nature 428 868-71
-
(2004)
Nature
, vol.428
, Issue.6985
, pp. 868-871
-
-
You, L.1
Cox, R.S.2
Weiss, R.3
Arnold, F.H.4
-
13
-
-
17844374314
-
A synthetic multicellular system for programmed pattern formation
-
Basu S, Gerchman Y, Collins C H, Arnold F H and Weiss R 2005 A synthetic multicellular system for programmed pattern formation Nature 434 1130-4
-
(2005)
Nature
, vol.434
, Issue.7037
, pp. 1130-1134
-
-
Basu, S.1
Gerchman, Y.2
Collins, C.H.3
Arnold, F.H.4
Weiss, R.5
-
14
-
-
28644440579
-
Artificial cell-cell communication in yeast saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana
-
Chen M T and Weiss R 2005 Artificial cell-cell communication in yeast saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana Nat. Biotechnol. 23 1551-5
-
(2005)
Nat. Biotechnol.
, vol.23
, Issue.12
, pp. 1551-1555
-
-
Chen, M.T.1
Weiss, R.2
-
15
-
-
1442306167
-
Design of artificial cell-cell communication using gene and metabolic networks
-
Bulter T, Lee S G, Wong W W, Fung E, Connor M R and Liao J C 2004 Design of artificial cell-cell communication using gene and metabolic networks Proc. Natl Acad. Sci. USA 101 2299-304
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, Issue.8
, pp. 2299-2304
-
-
Bulter, T.1
Lee, S.G.2
Wong, W.W.3
Fung, E.4
Connor, M.R.5
Liao, J.C.6
-
16
-
-
28544442417
-
Synthetic biology: Engineering Escherichia coli to see light
-
Levskaya A et al 2005 Synthetic biology: engineering Escherichia coli to see light Nature 438 441-2
-
(2005)
Nature
, vol.438
, Issue.7067
, pp. 441-442
-
-
Levskaya, A.1
Al, E.2
-
17
-
-
33645027986
-
Stochastic protein expression in individual cells at the single molecule level
-
Cai L, Friedman N and Xie X S 2006 Stochastic protein expression in individual cells at the single molecule level Nature 440 358-62
-
(2006)
Nature
, vol.440
, Issue.7082
, pp. 358-362
-
-
Cai, L.1
Friedman, N.2
Xie, X.S.3
-
18
-
-
21644441288
-
Long-term monitoring of bacteria undergoing programmed population control in a microchemostat
-
Balagadde F K, You L, Hansen C L, Arnold F H and Quake S R 2005 Long-term monitoring of bacteria undergoing programmed population control in a microchemostat Science 309 137-40
-
(2005)
Science
, vol.309
, Issue.5731
, pp. 137-140
-
-
Balagadde, F.K.1
You, L.2
Hansen, C.L.3
Arnold, F.H.4
Quake, S.R.5
-
19
-
-
33745504892
-
Microchemostat-microbial continuous culture in a polymer-based, instrumented microbioreactor
-
Zhang Z, Boccazzi P, Choi H G, Perozziello G, Sinskey A J and Jensen K F 2006 Microchemostat-microbial continuous culture in a polymer-based, instrumented microbioreactor Lab. Chip 6 906-13
-
(2006)
Lab. Chip
, vol.6
, Issue.7
, pp. 906-913
-
-
Zhang, Z.1
Boccazzi, P.2
Choi, H.G.3
Perozziello, G.4
Sinskey, A.J.5
Jensen, K.F.6
-
21
-
-
31944440023
-
Making bio-sense of toxicity: New developments in whole-cell biosensors
-
Sorensen S J, Burmolle M and Hansen L H 2006 Making bio-sense of toxicity: new developments in whole-cell biosensors Curr. Opin. Biotechnol. 17 11-6
-
(2006)
Curr. Opin. Biotechnol.
, vol.17
, Issue.1
, pp. 11-16
-
-
Sorensen, S.J.1
Burmolle, M.2
Hansen, L.H.3
-
22
-
-
29144482539
-
Environmentally controlled invasion of cancer cells by engineered bacteria
-
Anderson J C, Clarke E J, Arkin A P and Voigt C A 2006 Environmentally controlled invasion of cancer cells by engineered bacteria J. Mol. Biol. 355 619-27
-
(2006)
J. Mol. Biol.
, vol.355
, Issue.4
, pp. 619-627
-
-
Anderson, J.C.1
Clarke, E.J.2
Arkin, A.P.3
Voigt, C.A.4
-
23
-
-
0028129315
-
Computational functions in biochemical reaction networks
-
Arkin A and Ross J 1994 Computational functions in biochemical reaction networks Biophys. J. 67 560-78
-
(1994)
Biophys. J.
, vol.67
, pp. 560-578
-
-
Arkin, A.1
Ross, J.2
-
25
-
-
1042282182
-
Genetic circuit building blocks for cellular computation, communications, and signal processing
-
Weiss R, Basu S, Hooshangi S, Kalmbach A, Karig D, Mehreja R and Netravali I 2003 Genetic circuit building blocks for cellular computation, communications, and signal processing Nat. Comput. 2 47-84
-
(2003)
Nat. Comput.
, vol.2
, Issue.1
, pp. 47-84
-
-
Weiss, R.1
Basu, S.2
Hooshangi, S.3
Kalmbach, A.4
Karig, D.5
Mehreja, R.6
Netravali, I.7
-
26
-
-
33646167129
-
Plasticity of the cis-regulatory input function of a gene
-
Mayo A E, Setty Y, Shavit S, Zaslaver A and Alon U 2006 Plasticity of the cis-regulatory input function of a gene PLoS Biol. 4 e45
-
(2006)
PLoS Biol.
, vol.4
, Issue.4
, pp. 45
-
-
Mayo, A.E.1
Setty, Y.2
Shavit, S.3
Zaslaver, A.4
Alon, U.5
-
27
-
-
4344703213
-
BioLogic gates enable logical transcription control in mammalian cells
-
Kramer B P, Fischer C and Fussenegger M 2004 BioLogic gates enable logical transcription control in mammalian cells Biotechnol. Bioeng. 87 478-84
-
(2004)
Biotechnol. Bioeng.
, vol.87
, Issue.4
, pp. 478-484
-
-
Kramer, B.P.1
Fischer, C.2
Fussenegger, M.3
-
28
-
-
33746363486
-
DOMAINS, MOTIFS, and SCAFFOLDS: The role of modular interactions in the evolution and wiring of cell signaling circuits
-
Bhattacharyya R P, Remenyi A, Yeh B J and Lim W A 2006 DOMAINS, MOTIFS, AND SCAFFOLDS: the role of modular interactions in the evolution and wiring of cell signaling circuits Annu. Rev. Biochem. 75 655-80
-
(2006)
Annu. Rev. Biochem.
, vol.75
, Issue.1
, pp. 655-680
-
-
Bhattacharyya, R.P.1
Remenyi, A.2
Yeh, B.J.3
Lim, W.A.4
-
29
-
-
0037436155
-
Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms
-
Park S H, Zarrinpar A and Lim W A 2003 Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms Science 299 1061-4
-
(2003)
Science
, vol.299
, Issue.5609
, pp. 1061-1064
-
-
Park, S.H.1
Zarrinpar, A.2
Lim, W.A.3
-
30
-
-
0141757323
-
Reprogramming control of an allosteric signaling switch through modular recombination
-
Dueber J E, Yeh B J, Chak K and Lim W A 2003 Reprogramming control of an allosteric signaling switch through modular recombination Science 301 1904-8
-
(2003)
Science
, vol.301
, Issue.5641
, pp. 1904-1908
-
-
Dueber, J.E.1
Yeh, B.J.2
Chak, K.3
Lim, W.A.4
-
31
-
-
2542463049
-
Selectivity and promiscuity in the interaction network mediated by protein recognition modules
-
Castagnoli L, Costantini A, Dall'Armi C, Gonfloni S, Montecchi-Palazzi L, Panni S, Paoluzi S, Santonico E and Cesareni G 2004 Selectivity and promiscuity in the interaction network mediated by protein recognition modules FEBS Lett. 567 74-9
-
(2004)
FEBS Lett.
, vol.567
, Issue.1
, pp. 74-79
-
-
Castagnoli, L.1
Costantini, A.2
Dall'Armi, C.3
Gonfloni, S.4
Montecchi-Palazzi, L.5
Panni, S.6
Paoluzi, S.7
Santonico, E.8
Cesareni, G.9
-
32
-
-
3242664341
-
Scaffold proteins and assembly of multiprotein signaling complexes
-
Vondriska T M, Pass J M and Ping P 2004 Scaffold proteins and assembly of multiprotein signaling complexes J. Mol. Cell. Cardiol. 37 391-7
-
(2004)
J. Mol. Cell. Cardiol.
, vol.37
, Issue.2
, pp. 391-397
-
-
Vondriska, T.M.1
Pass, J.M.2
Ping, P.3
-
33
-
-
0037493100
-
Organization of signaling complexes by PDZ-domain scaffold proteins
-
Zhang M and Wang W 2003 Organization of signaling complexes by PDZ-domain scaffold proteins Acc. Chem. Res. 36 530-8
-
(2003)
Acc. Chem. Res.
, vol.36
, Issue.7
, pp. 530-538
-
-
Zhang, M.1
Wang, W.2
-
35
-
-
0033950079
-
The importance of being proline: The interaction of proline-rich motifs in signaling proteins with their cognate domains
-
Kay B K, Williamson M P and Sudol M 2000 The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains FASEB J. 14 231-41
-
(2000)
FASEB J.
, vol.14
, pp. 231-241
-
-
Kay, B.K.1
Williamson, M.P.2
Sudol, M.3
-
36
-
-
24044540256
-
Specificity and versatility of SH3 and other proline-recognition domains: Structural basis and implications for cellular signal transduction
-
Li S S 2005 Specificity and versatility of SH3 and other proline-recognition domains: structural basis and implications for cellular signal transduction Biochem. J. 390 641-53
-
(2005)
Biochem. J.
, vol.390
, pp. 641-653
-
-
Li, S.S.1
-
37
-
-
15944375458
-
PDZBase: A protein-protein interaction database for PDZ-domains
-
Beuming T, Skrabanek L, Niv M Y, Mukherjee P and Weinstein H 2005 PDZBase: a protein-protein interaction database for PDZ-domains Bioinformatics 21 827-8
-
(2005)
Bioinformatics
, vol.21
, Issue.6
, pp. 827-828
-
-
Beuming, T.1
Skrabanek, L.2
Niv, M.Y.3
Mukherjee, P.4
Weinstein, H.5
-
38
-
-
0037452950
-
Role of electrostatic interactions in PDZ domain ligand recognition
-
Harris B Z, Lau F W, Fujii N, Guy R K and Lim W A 2003 Role of electrostatic interactions in PDZ domain ligand recognition Biochemistry 42 2797-805
-
(2003)
Biochemistry
, vol.42
, Issue.10
, pp. 2797-2805
-
-
Harris, B.Z.1
Lau, F.W.2
Fujii, N.3
Guy, R.K.4
Lim, W.A.5
-
39
-
-
0035918517
-
Energetic determinants of internal motif recognition by PDZ domains
-
Harris B Z, Hillier B J and Lim W A 2001 Energetic determinants of internal motif recognition by PDZ domains Biochemistry 40 5921-30
-
(2001)
Biochemistry
, vol.40
, Issue.20
, pp. 5921-5930
-
-
Harris, B.Z.1
Hillier, B.J.2
Lim, W.A.3
-
40
-
-
0034789590
-
An analysis of the interactions between the sem-5 SH3 domain and its ligands using molecular dynamics, free energy calculations, and sequence analysis
-
Wang W, Lim W A, Jakalian A, Wang J, Wang J, Luo R, Bayly C I and Kollman P A 2001 An analysis of the interactions between the sem-5 SH3 domain and its ligands using molecular dynamics, free energy calculations, and sequence analysis J. Am. Chem. Soc. 123 3986-94
-
(2001)
J. Am. Chem. Soc.
, vol.123
, Issue.17
, pp. 3986-3994
-
-
Wang, W.1
Lim, W.A.2
Jakalian, A.3
Wang, J.4
Wang, J.5
Luo, R.6
Bayly, C.I.7
Kollman, P.A.8
-
41
-
-
0346555269
-
Optimization of specificity in a cellular protein interaction network by negative selection
-
Zarrinpar A, Park S H and Lim W A 2003 Optimization of specificity in a cellular protein interaction network by negative selection Nature 426 676-80
-
(2003)
Nature
, vol.426
, Issue.6967
, pp. 676-680
-
-
Zarrinpar, A.1
Park, S.H.2
Lim, W.A.3
-
42
-
-
4744353840
-
Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides
-
Wiedemann U, Boisguerin P, Leben R, Leitner D, Krause G, Moelling K, Volkmer-Engert R and Oschkinat H 2004 Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides J. Mol. Biol. 343 703-18
-
(2004)
J. Mol. Biol.
, vol.343
, Issue.3
, pp. 703-718
-
-
Wiedemann, U.1
Boisguerin, P.2
Leben, R.3
Leitner, D.4
Krause, G.5
Moelling, K.6
Volkmer-Engert, R.7
Oschkinat, H.8
-
43
-
-
0037305940
-
Functional genomics of intracellular peptide recognition domains with combinatorial biology methods
-
Sidhu S S, Bader G D and Boone C 2003 Functional genomics of intracellular peptide recognition domains with combinatorial biology methods Curr. Opin. Chem. Biol. 7 97-102
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, Issue.1
, pp. 97-102
-
-
Sidhu, S.S.1
Bader, G.D.2
Boone, C.3
-
44
-
-
25644442464
-
Natural-like function in artificial WW domains
-
Russ W P, Lowery D M, Mishra P, Yaffe M B and Ranganathan R 2005 Natural-like function in artificial WW domains Nature 437 579-83
-
(2005)
Nature
, vol.437
, Issue.7058
, pp. 579-583
-
-
Russ, W.P.1
Lowery, D.M.2
Mishra, P.3
Yaffe, M.B.4
Ranganathan, R.5
-
45
-
-
24644500492
-
Decoding protein-protein interactions through combinatorial chemistry: Sequence specificity of SHP-1, SHP-2, and SHIP SH2 domains
-
Sweeney M C, Wavreille A S, Park J, Butchar J P, Tridandapani S and Pei D 2005 Decoding protein-protein interactions through combinatorial chemistry: sequence specificity of SHP-1, SHP-2, and SHIP SH2 domains Biochemistry 44 14932-47
-
(2005)
Biochemistry
, vol.44
, Issue.45
, pp. 14932-14947
-
-
Sweeney, M.C.1
Wavreille, A.S.2
Park, J.3
Butchar, J.P.4
Tridandapani, S.5
Pei, D.6
-
46
-
-
33646114301
-
Crystal structure of the SH3 domain of betaPIX in complex with a high affinity peptide from PAK2
-
Hoelz A, Janz J M, Lawrie S D, Corwin B, Lee A and Sakmar T P 2006 Crystal structure of the SH3 domain of betaPIX in complex with a high affinity peptide from PAK2 J. Mol. Biol.
-
(2006)
J. Mol. Biol.
-
-
Hoelz, A.1
Janz, J.M.2
Lawrie, S.D.3
Corwin, B.4
Lee, A.5
Sakmar, T.P.6
-
47
-
-
33644842485
-
Structural determinants for high-affinity binding in a Nedd4 WW3* domain-comm PY motif complex
-
Kanelis V, Bruce M C, Skrynnikov N R, Rotin D and Forman-Kay J D 2006 Structural determinants for high-affinity binding in a Nedd4 WW3* domain-comm PY motif complex Structure 14 543-53
-
(2006)
Structure
, vol.14
, Issue.3
, pp. 543-553
-
-
Kanelis, V.1
Bruce, M.C.2
Skrynnikov, N.R.3
Rotin, D.4
Forman-Kay, J.D.5
-
48
-
-
33745436961
-
Synthetic protein-protein interaction domains created by shuffling Cys2His2 zinc-fingers
-
Giesecke A V, Fang R and Joung J K 2006 Synthetic protein-protein interaction domains created by shuffling Cys2His2 zinc-fingers Mol. Syst. Biol. 2 2006.0011
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Giesecke, A.V.1
Fang, R.2
Joung, J.K.3
-
49
-
-
0026682657
-
Transcription factors: Structural families and principles of DNA recognition
-
Pabo C O and Sauer R T 1992 Transcription factors: structural families and principles of DNA recognition Annu. Rev. Biochem. 61 1053-95
-
(1992)
Annu. Rev. Biochem.
, vol.61
, Issue.1
, pp. 1053-1095
-
-
Pabo, C.O.1
Sauer, R.T.2
-
50
-
-
0034923498
-
Design and selection of novel Cys2His2 zinc finger proteins
-
Pabo C O, Peisach E and Grant R A 2001 Design and selection of novel Cys2His2 zinc finger proteins Annu. Rev. Biochem. 70 313-40
-
(2001)
Annu. Rev. Biochem.
, vol.70
, Issue.1
, pp. 313-340
-
-
Pabo, C.O.1
Peisach, E.2
Grant, R.A.3
-
51
-
-
0035852739
-
Improved DNA binding specificity from polyzinc finger peptides by using strings of two-finger units
-
Moore M, Klug A and Choo Y 2001 Improved DNA binding specificity from polyzinc finger peptides by using strings of two-finger units Proc. Natl Acad. Sci. USA 98 1437-41
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, Issue.4
, pp. 1437-1441
-
-
Moore, M.1
Klug, A.2
Choo, Y.3
-
52
-
-
0344839044
-
Evaluation of a modular strategy for the construction of novel polydactyl zinc finger DNA-binding proteins
-
Segal D J et al 2003 Evaluation of a modular strategy for the construction of novel polydactyl zinc finger DNA-binding proteins Biochemistry 42 2137-48
-
(2003)
Biochemistry
, vol.42
, Issue.7
, pp. 2137-2148
-
-
Segal, D.J.1
Al, E.2
-
53
-
-
32044458625
-
Designer zinc-finger proteins and their applications
-
Papworth M, Kolasinska P and Minczuk M 2006 Designer zinc-finger proteins and their applications Gene 366 27-38
-
(2006)
Gene
, vol.366
, Issue.1
, pp. 27-38
-
-
Papworth, M.1
Kolasinska, P.2
Minczuk, M.3
-
54
-
-
0034691202
-
A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions
-
Joung J K, Ramm E I and Pabo C O 2000 A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions Proc. Natl Acad. Sci. USA 97 7382-7
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, Issue.13
, pp. 7382-7387
-
-
Joung, J.K.1
Ramm, E.I.2
Pabo, C.O.3
-
55
-
-
0142165907
-
Engineered zinc finger proteins for controlling stem cell fate
-
Bartsevich V V, Miller J C, Case C C and Pabo C O 2003 Engineered zinc finger proteins for controlling stem cell fate Stem Cells 21 632-7
-
(2003)
Stem Cells
, vol.21
, Issue.6
, pp. 632-637
-
-
Bartsevich, V.V.1
Miller, J.C.2
Case, C.C.3
Pabo, C.O.4
-
56
-
-
23444446753
-
A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors
-
Meng X, Brodsky M H and Wolfe S A 2005 A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors Nat. Biotechnol. 23 988-94
-
(2005)
Nat. Biotechnol.
, vol.23
, Issue.8
, pp. 988-994
-
-
Meng, X.1
Brodsky, M.H.2
Wolfe, S.A.3
-
57
-
-
3242655757
-
A bacterial two-hybrid system based on transcription activation
-
Dove S L and Hochschild A 2004 A bacterial two-hybrid system based on transcription activation Methods Mol. Biol. 261 231-46
-
(2004)
Methods Mol. Biol.
, vol.261
, pp. 231-246
-
-
Dove, S.L.1
Hochschild, A.2
-
58
-
-
23644461212
-
Artificial transcriptional activation domains
-
Lum J K and Mapp A K 2005 Artificial transcriptional activation domains Chembiochem 6 1311-5
-
(2005)
Chembiochem
, vol.6
, Issue.8
, pp. 1311-1315
-
-
Lum, J.K.1
Mapp, A.K.2
-
59
-
-
15744378289
-
Numerical simulation of stochastic gene circuits
-
Salis H and Kaznessis Y 2005 Numerical simulation of stochastic gene circuits Comput. Chem. Eng. 29 577-88
-
(2005)
Comput. Chem. Eng.
, vol.29
, Issue.3
, pp. 577-588
-
-
Salis, H.1
Kaznessis, Y.2
-
61
-
-
15744387380
-
Transcriptional regulation by the numbers: Models
-
Bintu L, Buchler N E, Garcia H G, Gerland U, Hwa T, Kondev J and Phillips R 2005 Transcriptional regulation by the numbers: models Curr. Opin. Genet. Dev. 15 116-24
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, Issue.2
, pp. 116-124
-
-
Bintu, L.1
Buchler, N.E.2
Garcia, H.G.3
Gerland, U.4
Hwa, T.5
Kondev, J.6
Phillips, R.7
-
62
-
-
0022429106
-
The or control system of bacteriophage lambda: A physical-chemical model for gene regulation
-
Shea M A and Ackers G K 1985 The OR control system of bacteriophage lambda: a physical-chemical model for gene regulation J. Mol. Biol. 181 211-30
-
(1985)
J. Mol. Biol.
, vol.181
, Issue.2
, pp. 211-230
-
-
Shea, M.A.1
Ackers, G.K.2
-
63
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage lamda infected Escherichia coli cells
-
Arkin A P and McAdams H H 1998 Stochastic kinetic analysis of developmental pathway bifurcation in phage lamda infected Escherichia coli cells Genetics 149 1633-48
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A.P.1
McAdams, H.H.2
-
65
-
-
33645465102
-
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
-
Salis H, Sotiropoulos V and Kaznessis Y N 2006 Multiscale Hy3S: hybrid stochastic simulation for supercomputers BMC Bioinformatics 7 93
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.1
, pp. 93
-
-
Salis, H.1
Sotiropoulos, V.2
Kaznessis, Y.N.3
-
66
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
Gillespie D T 1976 A general method for numerically simulating the stochastic time evolution of coupled chemical reactions J. Comput. Phys. 22 403-34
-
(1976)
J. Comput. Phys.
, vol.22
, Issue.4
, pp. 403-434
-
-
Gillespie, D.T.1
-
67
-
-
22944451159
-
Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions
-
Salis H and Kaznessis Y 2005 Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions J. Chem. Phys. 122 054103
-
(2005)
J. Chem. Phys.
, vol.122
, pp. 054103
-
-
Salis, H.1
Kaznessis, Y.2
-
68
-
-
0016376109
-
Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. the lac operon: Equilibrium aspects
-
von Hippel P H, Revzin A, Gross C A and Wang A C 1974 Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects Proc. Natl Acad. Sci. USA 71 4808-12
-
(1974)
Proc. Natl Acad. Sci. USA
, vol.71
, Issue.12
, pp. 4808-4812
-
-
Von Hippel, P.H.1
Revzin, A.2
Gross, C.A.3
Wang, A.C.4
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