A user's guide to key genetic resources for plant pathology

Plant Disease

Volumn 91, Issue 5, 2007, Pages 476-484

  Babcock, Carolyn ^a   Chen, Xianming ^b   Crous, Pedro W ^c   Dugan, Frank M ^b   Goates, Blair ^b   Green, Peter N ^d  

^a AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^b U S DEPARTMENT OF AGRICULTURE   (United States)

^c CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

^d NCIMB Ltd   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 34247501200     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PDIS-91-5-0476     Document Type: Review

References (88)

1. Anonymous. 1998. The National Plant Germplasm System: A sum greater than its parts. Diversity 14:6-7.
2. APS Collections and Germplasm Committee. 2005. Is your favorite pathogen collection endangered? (Abstr.) Phytopathology 95:S4.
3. APS Committee on Standardization of Common Names for Plant Diseases. 2005. Common Names of Plant Diseases. APSnet. American Phytopathological Society. Online publication.
4. Bass, S. P., and Muller, M. R. 2000. Protecting Biodiversity: National Laws Regulating Access to Genetic Resources in the Americas. International Development Research Centre, Ottawa.
5. Bonman, J. M., Bockelman, H. E., Goates, B. J., Obert, D. E., McGuire, P. E., Qualset, C. O., and Hijmans, R. J. 2006. Geographic distribution of common and dwarf bunt resistance in landraces of Triticum aestivum subsp. aestivum. Crop Sci. 46:1622-1629.
6. Bridge, P. D., Roberts, P. J., Spooner, B. M., and Panchal, G. 2003. On the unreliability of published DNA sequences. New Phytol. 160:43-48.
7. Brown, A. H. D., Frankel, O. H., Marshall, D. R., and Williams, J. T., eds. 1980. The Use of Plant Genetic Resources. Cambridge University Press, Cambridge, UK.
8. Buchwaldt, L., and Richards, K. W. 2004. Plant gene resources of Canada and the Canadian plant germplasm system. Can. J. Plant Pathol. 26:48-51.
9. Chang, T. T., Goodman, M. M., and Krugman, S. L. 1989. Plant genetic resources - key to future plant production: Plant science lecture series, 1984. Iowa State J. Res. 59:323-539.
10. Clark, R. L. 1989. Seed maintenance and storage. Pages 95-110 in: Plant Breeding Reviews 7. J. Janick, ed. Timber Press, Portland, OR.
11. Colwell, R. R. 1992. Endangered Culture Collections: Proceedings of the First and Second International Symposia. World Federation for Culture Collections and Maryland Biotechnology Institute, MD.
12. Copeland, L. O., and McDonald, M. B. 2001. Principles of Seed Science and Technology, 4th ed. Kluwer, Boston.
13. Crous, P. W. 2003. Fungi and research collaborations with the Centraalbureau voor Schimmelcultures (CBS) in the Netherlands. Inoculum 54:11-13.
14. Crous, P. W., Gams, W., Stalpers, J. A., Robert, V., and Stegehuis, G. 2004. MycoBank: An online initiative to launch mycology into the 21st century. Stud. Mycol. 50:19-22.
15. Crous, P. W., Phillips, A. J. L., and Baxter, A. P. 2000. Phytopathogenic fungi from South Africa. University of Stellenbosch, Dept. of Plant Pathology Press, Stellenbosch, South Africa.
16. Day, P. R. (chair) 1991. Managing Global Genetic Resources: The U.S. National Plant Germplasm System. Board on Agriculture, National Research Council, National Academy Press, Washington, DC.
17. De Clerke-Floate, R., Plue, P., and Lee, T., eds. 2005. A tour of the Lethbridge Research Centre Insect-Microbial Containment Facility. Agriculture and Agri-Food Canada, Lethbridge, Catalogue No. A42-102/2005E.
18. de Hoog, G. S. 1996. Risk assessment of fungi reported from humans and animals. Mycoses 39:407-417.
19. de Hoog, G. S., Guarro, J., Gené, J., and Figueras, M. J. 2000. Atlas of Clinical Fungi, 2nd ed. Centraalbureau voor Schimmelcultures, Utrecht, Netherlands, and Universitat Rovira i Virgili, Rues, Spain (CD ROM version September 2005).
20. de Hoog, G. S., and Horré, R. 2002. Molecular taxonomy of the Alternaria and Ulocladium species from humans, and their identification in the routine laboratory. Mycoses 45:259-276.
21. Desai, B. B. 2004. Seeds Handbook: Biology, Production, Processing, and Storage, 2nd ed. Marcel Dekker, New York.
22. Dhingra, O. K., and Sinclair, J. B. 1994. Basic Plant Pathology Methods. CRC, Boca Raton, FL.
23. Diekmann, M. 1997. FAO/IPGRI technical guidelines for the safe movement of germplasm. No. 18: Allium spp. Food and Agriculture Organization of the United Nations, Rome/International Plant Genetic Resources Institute, Rome.
24. Diekmann, M., and Putter, C. A. J. 1995. FAO/IPGRI technical guidelines for the safe movement of germplasm. No. 14: Small grain temperate cereals. Food and Agriculture Organization of the United Nations, Rome/International Plant Genetic Resources Institute, Rome.
25. Doijode, S. D. 2001. Seed Storage of Horticultural Crops. Haworth Press, New York.
26. Dugan, F. M., and Nakasone, K. K. 1998. Mapping the microbial universe: The importance of living collections for fungal systemat-ics. Diversity 14(3&4):35-39.
27. Dugan, F. M., and Tang, J. S. 2000. Culture collections. Pages 498-502 in: Encyclopedia of Food Microbiology, Vol. I. R. K. Robinson, C. A. Batt, and P. D. Patel, eds. Academic Press, London.
28. Ellis, R. H. et al., eds. 1985. Handbook of Seed Technology for Genebanks. Vol. 2, International Board for Plant Genetic Resources (1985). IBPGR, Rome.
29. Farr, D., and Paul, B. 2001. Protocols for handling living fungal cultures at the SBML. Inoculum 52:13.
30. Frison, E. A., Bos, L., Hamilton, R. I., Mathur, S. B., and Taylor, J. D., eds. FAO/IPGRI technical guidelines for the safe movement of legume germplasm. Food and Agriculture Organization of the United Nations, Rome/International Board for Plant Genetic Resources, Rome.
31. Goates, B. J. 1997. Host resistance to dwarf bunt. Pages 317-326 in: Proceedings, Bunts and Smuts of Wheat: An International Symposium. V. E. Malik and D. E. Mathre, eds. Raleigh, NC, August 17-20, 1997.
32. Green, P. N. Endangered culture collections: The baby or the bath water. WFCC Newsl. In press.
33. Greuter, W., McNeill, J., Barrie, F. R., Burdet, H. M., Demoulin, V., Filgueiras, T. S., Nicolson, D. H., Silva, P. C., Skog, J. E., Trehane, P., Turland, N. J., and Hawksworth, D. L., eds. 1999. International Code of Botanical Nomenclature (Saint Louis Code) adopted by the XVI International Botanical Congress, St. Louis, MO, July-August 1999. Regnum Veg. 138:1-474.
34. Hawksworth, D. L., Sastramihardja, I., Kokke, R., and Stevenson, R. 1990. WFCC Guidelines for the Establishment and Operation of collections of Cultures of Microorganisms. World Federation of Culture Collections, Simworth Press, Richmond, Surrey, UK.
35. Hawtin, G., and Reeves, T. 1998. Intellectual property rights and access to genetic resources in the Consultative Group on international Agricultural Research. Pages 41-58 in: Intellectual Property Rights III Global Genetic Resources: Access and Property Rights. S. A. Eberhardt, H. L. Shands, W. Collins, and R. L. Lower, eds. Crop Science Society of America and American Society of Agronomy, Madison, WI.
36. Hoagland, K. E., and Rossman, A. Y., eds. 1997. Global Genetic Resources: Access, Ownership, and Intellectual Property Rights. Beltsville Symposia in Agricultural Research. The Association of Systematics Collections, Washington, DC.
37. Holmgren, P. K., Holmgren, N. H., and Barnett, L. C. 1990. Index Herbariorum. Part I: The Herbaria of the World, 8th ed. Regnum Vegetabile, Vol. 120. For International Association for Plant Taxonomy by New York Botanical Garden, Bronx, NY
38. Hummer, K. E. 1998. First clonal germplasm repository reaches adolescence. Diversity 14:20-21.
39. Hunter-Cevera, J. C., and Belt, A. 1996. Maintaining Cultures for Biotechnology and Industry. Academic Press, New York.
40. Johnson, R. C., Johnston, W. J., Golob, C. T., Nelson, M. C., and Soreng, R. J. 2002. Characterization of the USDA Poa pratensis collection using RAPD markers and agronomic descriptors. Genet. Resour. Crop Evol. 49:349-361.
41. Jong, S. C., Dugan, F. M., Birmingham, J. M., and Cypess, R. H. 1998. Internal quality control audits for microbiology laboratories in culture collections. SIM News 48:66-69.
42. Kahn, R. P., and Mathur, S. B. 1999. Containment Facilities and Safeguards for Exotic Plant Pathogens and Pests. American Phytopathological Society, St. Paul, MN.
43. Kirk, P. M., Cannon, P. F., David, J. C., and Stalpers, J. A. 2001. Dictionary of the Fungi, 9th ed. CABI Bioscience, Wallingford, Oxon, UK.
44. Kristjansson, G., ed. 2005. Containment guidelines for plant pests: Draft for comment. Biohazard Containment and Safety Unit, Science Branch, Canadian Food Inspection Agency, Ottawa.
45. Lapage, S. P., Sneath, P. H. A., Lessel, E. F., Skerman, V. B. D., Seeliger, H. P. R., and Clark, W. A. 1992. International Code of Nomenclature for Bacteria. American Society for Microbiology, Washington, DC
46. Lichtenfels, J. R., Kirkbride, J. H., Jr., and Chitwood, D. J., eds. 1998. Systematic Collections of the Agricultural Research Service. U.S. Dep. Agric., Agric. Res. Serv., Misc. Pubi. 1343.
47. Ma, G., Gu, K. T., and Dugan, F. 1999. Filamentous fungi and yeasts: ATCC quality control and quality assurance. Inoculum 50:1-2.
48. Madden, L. V. 2001. What are the nonindigenous plant pathogens that threaten U.S. crops and forests? APSnet Feature. American Phytopathological Society. Online publication.
49. Mayo, M. A., Maniloff, J., van Regenmortel, M. H. V., and Fauquet, C. M. 2002. The type species in virus taxonomy. Arch. Virol. 147:1271-1274.
50. McCluskey, K. 2003. Fungal germplasm and databases. Pages 295-310 in: Applied Mycology & Biotechnology: Fungal Genomics. G. G. Khachatourians and D. K. Arora, eds. San Diego Technical Books, San Diego.
51. McCluskey, K. 2003. Plant pathology related culture collection resources. APSnet Feature, December. American Phytopathological Society. Online publication.
52. McDaniel, L. L., Jong, S. C., and Gherna, R. L. 1992. The American Type Culture Collection: Germplasm resources for plant pathologists. Plant Dis. 76:762-767.
53. Mowder, J. D., and Stoner, A. K. 1989. Information systems. Pages 57-65 in: Plant Breeding Reviews 7. J. Janick, ed. Timber Press, Portland, OR.
54. Nakasone, K. K., Peterson, S. W., and Jong, S. C. 2004. Preservation and distribution of fungal cultures. Pages 37-47 in: Biodiversity of Fungi: Inventory and Monitoring Methods. G. M. Mueller, G. F. Bills, and M. S. Foster, eds. Elsevier, Amsterdam.
55. Office of Technology Assessment, Congress of the United States. 1990. New Developments in Biotechnology: Patenting Life. Marcel Dekker, New York.
56. Padhye, A. A., Bennett, J. E., McGinnis, M. R., Sigler, L., Flis, A., and Salkin, I. F. 1998. Biosafety considerations in handling medically important fungi. Med. Mycol. 36(Suppl.):258-265.
57. Park, H. G., Managbanag, J. R., Stamenova, E. K., and Jong, S. C. 2004. Comparative analysis of common indoor Cladosporium species based on molecular data and conidial characters. Mycotaxon 89:441-451.
58. Perdue, R. E., Jr., and Christenson, G. M. 1989. Plant exploration. Pages 67-94 in: Plant Breeding Reviews 7. J. Janick, ed. Timber Press, Portland, OR.
59. Petersen, R. H. n.d. Glossary of "type" terminology. University of Tennessee, Division of Biology, BioComputing. Online publication.
60. Peterson, S. W. 2000. Phylogenese relationships in Aspergillus based on RDNA sequence analysis. Pages 323-355 in: Integration of Modern Taxonomic Methods for Penicillium and Aspergillus Classification. R. A. Samson and J. I. Pitt, eds. Harwood Academic Publishers, Amsterdam.
61. Raja, K., Selvaraju, P., and Palanisamy, V. 2003. Desiccation and cryopreservation of recalcitrant arecanut (Areca catechu L.) embryos. Plant Genet. Resour. Newsl. 133:16-18.
62. Rhode, C. 2005. Postal, quarantine and safety regulations: Activities, developments and concerns. World Federation of Culture Collections Committee on Postal, Quarantine and Safety Regulations Report 2000-2004. WFCC Newsl. Online publication.
63. Rhode, C. 2005. New Transport Regulations for Infectious Substances as of January 2005. WFCC Newsl. Online publication.
64. Richmond, J. Y., and McKinney, R. W., eds. 1999. Biosafety in Microbiological and Biomedical Laboratories, 4th ed. Centers for Disease Control and Prevention and National Institutes of Health, Washington, DC.
65. Roos, E. E. 1989. Long-term seed storage. Pages 129-182 in: Plant Breeding Reviews 7. J. Janick, ed. Timber Press, Portland, OR.
66. Ruff, A. M. 1998. One hundred years of solitude: U.S. National Plant Germplasm System celebrates centennial and looks to challenges of 2000. Diversity 14:8.
67. Ruff, A. M. 1998. Remarkable success of GRIN has greatly increased value of NPGS collections. Diversity 14:9.
68. Ryan, M. J., and Smith, D. 2004. Fungal genetic resource centres and the genomic challenge. Mycol. Res. 108:1351-1362.
69. Schopmeyer, C. S. 1974. Seeds of Woody Plants in the United States. U.S. Dep. Agric. For. Serv., Agric. Handb. 450, Washington, DC.
70. Secretariat of the International Plant Protection Convention. 2006. Official contact points and directory of national and regional plant protection organizations. International Plant Protection Convention. www.ippc.int.
71. Shands, H. L., and Wiesner, L. E., eds. 1991. Use of Plant Introductions in Cultivar Development, Part 1. Proceedings of a Symposium sponsored by Division C-1 of the Crop Science Society of America, Las Vegas, Nevada, 19 Oct. 1989. Crop Science Society of America, Madison, WI.
72. Shands, H. L., and Wiesner, L. E., eds. 1992. Use of Plant Introductions in Cultivar Development, Part 2. Proceedings of a Symposium sponsored by Division C-1 of the Crop Science Society of America, Las Vegas, Nevada, 19 Oct. 1989. Crop Science Society of America, Madison, WI.
73. Sigler, L. 2004. Culture collections in Canada: Perspectives and problems. Can. J. Plant Pathol. 26:39-47.
74. Simione, F., and Brown, E. M. 1991. ATCC Preservation Methods: Freezing and Freeze-Drying, 2nd ed. ATCC, Rockville, MD.
75. Smale, M., Day-Rubenstein, K., Zohrabian, A., and Hodgkin, T. 2001. The demand for crop genetic resources: International use of the U.S. National Plant Germplasm System. International Food Policy Research Institute, Washington, DC, and International Plant Genetic Resources Institute, Maccarese, Italy.
76. Smith, D., and Onions, A. H. S. 1994. The Preservation and Maintenance of Living Fungi, 2nd ed. CAB International, Wallingford, Oxon, UK.
77. Smith, D., Ryan, M. J., and Day, J. G., eds. 2001. The UK National Culture Collection (UKNCC) Biological Resource: Properties, Maintenance and Management. UKNCC, Surrey, UK.
78. Trappe, J. 2004. The ways of herbaria: A cautionary note for users of herbarium collections. Inoculum 55:3-4.
79. U.S. Department of Transportation (n.d.) Infectious substances: What you need to know. U.S. Department of Transportation Research and Special Programs Administration, Hazardous Materials Safety, Washington, DC.
80. van Regenmortel, M. H. V., Fauquet, C. M., Bishop, D. H. L., Carstens, E. B., Estes, M. K., Lemon, S. M., Maniloff, J., Mayo, M. A., McGeoch, D. J., Pringle, C. R., and Wickner, R. B. 2000. Virus Taxonomy: Classification and Nomenclature of Viruses: Seventh Report of the International Committee on Taxonomy of Viruses, Academic Press, San Diego.
81. Waller, J. M., Lenné, J. M., and Waller, S. J. 2001. Plant Pathologist's Pocketbook, 3rd ed. CABI, New York.
82. Westwood, M. N. 1989. Maintenance and storage: Clonal germplasm. Pages 111-128 in: Plant Breeding Reviews 7. J. Janick, ed. Timber Press, Portland, OR.
83. White, G. A., Shands, H. L., and Lovell, G. R. 1989. History and operation of the National Plant Germplasm System. Pages 5-56 in: Plant Breeding Reviews 7. J. Janick, ed. Timber Press, Portland, OR.
84. Williams, K. A. 1998. Plant exchange office leads way in establishing non-monetary benefit-sharing regimes. Diversity 14:23-24.
85. World Health Organization. 1997. Guidelines for the safe transport of infectious substances and diagnostic specimens. WHO/EMC?97.3, World Health Organization, Division of Emerging and Other Communicable Diseases Surveillance and Control, Geneva.
86. Worthington, L. F. 1998. National Genetic Resources Advisory Council seeks to improve NGRP through far-reaching activities in germ-plasm and genomic research. Diversity 14:12-15.
87. Wu, (F.) W., Thiers, B. M., and Pfister, D. H. 2004. Preparation, preservation, and use of fungal specimens in herbaria. Pages 23-36 in: Biodiversity of Fungi: Inventory and Monitoring Methods. G. M. Mueller, G. F. Bills, and M. S. Foster, eds. Elsevier, Amsterdam.
88. Zentral Kommission für die Biologische Sicherheit, n.d. Liste risikobewerteter Spender-und Embfängerorganismen für gentechnischen Arbeiten. www.verwaltung.uni-hamburg.de/k/9/handbuch/3/11-06aa.pdf.