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Volumn 64, Issue 3, 2007, Pages 807-821

Cold-shock-induced de novo transcription and translation of infA and role of IF1 during cold adaptation

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; INITIATION FACTOR 1; MESSENGER RNA;

EID: 34247470279     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2007.05699.x     Document Type: Article
Times cited : (33)

References (50)
  • 1
    • 0030972952 scopus 로고    scopus 로고
    • H-NS: A modulator of environmentally regulated gene expression
    • Atlung, T. Ingmer, H. (1997) H-NS: a modulator of environmentally regulated gene expression. Mol Microbiol 24 : 7 17.
    • (1997) Mol Microbiol , vol.24 , pp. 7-17
    • Atlung, T.1    Ingmer, H.2
  • 2
    • 0027391014 scopus 로고
    • Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III
    • Babitzke, P., Granger, L., Olszewski, J. Kushner, S.R. (1993) Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III. J Bacteriol 175 : 229 239.
    • (1993) J Bacteriol , vol.175 , pp. 229-239
    • Babitzke, P.1    Granger, L.2    Olszewski, J.3    Kushner, S.R.4
  • 3
    • 0035176037 scopus 로고    scopus 로고
    • Cold-temperature induction of Escherichia coli polynucleotide phosphorylase occurs by reversal of its autoregulation
    • Beran, R.K. Simons, R.W. (2001) Cold-temperature induction of Escherichia coli polynucleotide phosphorylase occurs by reversal of its autoregulation. Mol Microbiol 39 : 112 125.
    • (2001) Mol Microbiol , vol.39 , pp. 112-125
    • Beran, R.K.1    Simons, R.W.2
  • 5
    • 0035999793 scopus 로고    scopus 로고
    • Structure and function of bacterial initiation factors
    • Boelens, R. Gualerzi, C.O. (2002) Structure and function of bacterial initiation factors. Curr Protein Pept Sci 3 : 107 119.
    • (2002) Curr Protein Pept Sci , vol.3 , pp. 107-119
    • Boelens, R.1    Gualerzi, C.O.2
  • 6
    • 0030051047 scopus 로고    scopus 로고
    • Post-transcriptional regulation of CspA expression in Escherichia coli
    • Brandi, A., Pietroni, P., Gualerzi, C.O. Pon, C.L. (1996) Post-transcriptional regulation of CspA expression in Escherichia coli. Mol Microbiol 19 : 231 240.
    • (1996) Mol Microbiol , vol.19 , pp. 231-240
    • Brandi, A.1    Pietroni, P.2    Gualerzi, C.O.3    Pon, C.L.4
  • 7
    • 0033559269 scopus 로고    scopus 로고
    • Massive presence of the Escherichia coli'major cold-shock protein' CspA under non-stress conditions
    • Brandi, A., Spurio, R., Gualerzi, C.O. Pon, C.L. (1999) Massive presence of the Escherichia coli'major cold-shock protein' CspA under non-stress conditions. EMBO J 18 : 1653 1659.
    • (1999) EMBO J , vol.18 , pp. 1653-1659
    • Brandi, A.1    Spurio, R.2    Gualerzi, C.O.3    Pon, C.L.4
  • 9
    • 0013800442 scopus 로고
    • The sedimentation behaviour of ribonuclease-active and - Inactive ribosomes from bacteria
    • Cammack, K.A. Wade, H.E. (1965) The sedimentation behaviour of ribonuclease-active and - inactive ribosomes from bacteria. Biochem J 96 : 671 680.
    • (1965) Biochem J , vol.96 , pp. 671-680
    • Cammack, K.A.1    Wade, H.E.2
  • 11
    • 33748314478 scopus 로고    scopus 로고
    • Translation initiation factor IF2 interacts with the 30S ribosomal subunit via two separate binding sites
    • Caserta, E., Tomsic, J., Spurio, R., La Teana, A., Pon, C.L. Gualerzi, C.O. (2006) Translation initiation factor IF2 interacts with the 30S ribosomal subunit via two separate binding sites. J Mol Biol 362 : 787 799.
    • (2006) J Mol Biol , vol.362 , pp. 787-799
    • Caserta, E.1    Tomsic, J.2    Spurio, R.3    La Teana, A.4    Pon, C.L.5    Gualerzi, C.O.6
  • 12
    • 0036069537 scopus 로고    scopus 로고
    • Gene expression profiling of Escherichia coli growth transitions: An expanded stringent response model
    • Chang, D.E., Smalley, D.J. Conway, T. (2002) Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model. Mol Microbiol 45 : 289 306.
    • (2002) Mol Microbiol , vol.45 , pp. 289-306
    • Chang, D.E.1    Smalley, D.J.2    Conway, T.3
  • 13
    • 0028121106 scopus 로고
    • Translation initiation factor IF1 is essential for cell viability in Escherichia coli
    • Cummings, H.S. Hershey, J.W. (1994) Translation initiation factor IF1 is essential for cell viability in Escherichia coli. J Bacteriol 176 : 198 205.
    • (1994) J Bacteriol , vol.176 , pp. 198-205
    • Cummings, H.S.1    Hershey, J.W.2
  • 14
    • 0025991729 scopus 로고
    • Structure and expression of the infA operon encoding translational initiation factor IF1. Transcriptional control by growth rate
    • Cummings, H.S., Sands, J.F., Foreman, P.C., Fraser, J. Hershey, J.W.B. (1991) Structure and expression of the infA operon encoding translational initiation factor IF1. Transcriptional control by growth rate. J Biol Chem 266 : 16491 16498.
    • (1991) J Biol Chem , vol.266 , pp. 16491-16498
    • Cummings, H.S.1    Sands, J.F.2    Foreman, P.C.3    Fraser, J.4    Hershey, J.W.B.5
  • 15
    • 0029880342 scopus 로고    scopus 로고
    • Antagonistic involvement of FIS and H-NS proteins in the transcriptional control of hns expression
    • Falconi, M., Brandi, A., La Teana, A., Gualerzi, C.O. Pon, C.L. (1996) Antagonistic involvement of FIS and H-NS proteins in the transcriptional control of hns expression. Mol Microbiol 19 : 965 975.
    • (1996) Mol Microbiol , vol.19 , pp. 965-975
    • Falconi, M.1    Brandi, A.2    La Teana, A.3    Gualerzi, C.O.4    Pon, C.L.5
  • 16
    • 1642580810 scopus 로고    scopus 로고
    • Preferential translation of cold-shock mRNAs during cold adaptation
    • Giuliodori, A.M., Brandi, A., Gualerzi, C.O. Pon, C.L. (2004) Preferential translation of cold-shock mRNAs during cold adaptation. RNA 10 : 265 276.
    • (2004) RNA , vol.10 , pp. 265-276
    • Giuliodori, A.M.1    Brandi, A.2    Gualerzi, C.O.3    Pon, C.L.4
  • 17
    • 0016800091 scopus 로고
    • Light-scattering studies showing the effect of initiation factors on the reversible dissociation of Escherichia coli ribosomes
    • Godefroy-Colburn, T., Wolfe, A.D., Dondon, J. Grunberg-Manago, M. (1975) Light-scattering studies showing the effect of initiation factors on the reversible dissociation of Escherichia coli ribosomes. J Mol Biol 94 : 461 478.
    • (1975) J Mol Biol , vol.94 , pp. 461-478
    • Godefroy-Colburn, T.1    Wolfe, A.D.2    Dondon, J.3    Grunberg-Manago, M.4
  • 18
    • 0030033310 scopus 로고    scopus 로고
    • Differential mRNA stability of the cspA gene in the cold-shock response of Escherichia coli
    • Goldenberg, D., Azar, I. Oppenheim, A.B. (1996) Differential mRNA stability of the cspA gene in the cold-shock response of Escherichia coli. Mol Microbiol 19 : 241 248.
    • (1996) Mol Microbiol , vol.19 , pp. 241-248
    • Goldenberg, D.1    Azar, I.2    Oppenheim, A.B.3
  • 20
    • 0000701134 scopus 로고    scopus 로고
    • Regulation of the expression of aminoacyl-tRNA synthetases and translation factors
    • In. Neidhardt, F.C., (ed.). Washington, DC: American Society for Microbiology Press, pp.
    • Grunberg-Manago, M. (1996) Regulation of the expression of aminoacyl-tRNA synthetases and translation factors. In Escherichia Coli and Salmonella: Cellular and Molecular Biology. Neidhardt, F.C., (ed.). Washington, DC : American Society for Microbiology Press, pp. 1432 1457.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology. , pp. 1432-1457
    • Grunberg-Manago, M.1
  • 22
    • 0043166304 scopus 로고    scopus 로고
    • Transcriptional and post-transcriptional control of cold-shock genes
    • Gualerzi, C.O., Giuliodori, A.M. Pon, C.L. (2003) Transcriptional and post-transcriptional control of cold-shock genes. J Mol Biol 331 : 527 539.
    • (2003) J Mol Biol , vol.331 , pp. 527-539
    • Gualerzi, C.O.1    Giuliodori, A.M.2    Pon, C.L.3
  • 23
    • 0020574745 scopus 로고
    • Initiation factor and ribosome levels are coordinately controlled in Escherichia coli growing at different rates
    • Howe, J.G. Hershey, J.W. (1983) Initiation factor and ribosome levels are coordinately controlled in Escherichia coli growing at different rates. J Biol Chem 258 : 1954 1959.
    • (1983) J Biol Chem , vol.258 , pp. 1954-1959
    • Howe, J.G.1    Hershey, J.W.2
  • 24
    • 0026641172 scopus 로고
    • DNA gyrase, CS7.4, and the cold shock response in Escherichia coli
    • Jones, P.G., Krah, R., Tafuri, S.R. Wolffe, A.P. (1992) DNA gyrase, CS7.4, and the cold shock response in Escherichia coli. J Bacteriol 174 : 5798 5802.
    • (1992) J Bacteriol , vol.174 , pp. 5798-5802
    • Jones, P.G.1    Krah, R.2    Tafuri, S.R.3    Wolffe, A.P.4
  • 25
    • 0000847987 scopus 로고    scopus 로고
    • Regulation of ribosome synthesis
    • In. Neidhardt, F.C., (ed.). Washington, DC: American Society for Microbiology Press, pp.
    • Keener, J. Nomura, M. (1996) Regulation of ribosome synthesis. In Escherichia Coli and Salmonella: Cellular and Molecular Biology. Neidhardt, F.C., (ed.). Washington, DC : American Society for Microbiology Press, pp. 1417 1431.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology. , pp. 1417-1431
    • Keener, J.1    Nomura, M.2
  • 26
    • 30644465040 scopus 로고    scopus 로고
    • Differential promoter usage of infA in response to cold shock in Escherichia Coli
    • Ko, J.H., Lee, S.J., Cho, B. Lee, Y. (2006) Differential promoter usage of infA in response to cold shock in Escherichia Coli. FEBS Lett 580 : 539 544.
    • (2006) FEBS Lett , vol.580 , pp. 539-544
    • Ko, J.H.1    Lee, S.J.2    Cho, B.3    Lee, Y.4
  • 27
    • 0025790144 scopus 로고
    • Identification of a cold shock transcriptional enhancer of the Escherichia coli gene encoding nucleoid protein H-NS
    • La Teana, A., Brandi, A., Falconi, M., Spurio, R., Pon, C.L. Gualerzi, C.O. (1991) Identification of a cold shock transcriptional enhancer of the Escherichia coli gene encoding nucleoid protein H-NS. Proc Natl Acad Sci USA 88 : 10907 10911.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 10907-10911
    • La Teana, A.1    Brandi, A.2    Falconi, M.3    Spurio, R.4    Pon, C.L.5    Gualerzi, C.O.6
  • 29
    • 33749021074 scopus 로고    scopus 로고
    • The nucleotide-binding site of bacterial translation initiation factor 2 (IF2) as a metabolic sensor
    • Milon, P., Tischenko, E., Tomsic, J., Caserta, E., Folkers, G., La Teana, A., et al. (2006) The nucleotide-binding site of bacterial translation initiation factor 2 (IF2) as a metabolic sensor. Proc Natl Acad Sci USA 103 : 13962 13967.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 13962-13967
    • Milon, P.1    Tischenko, E.2    Tomsic, J.3    Caserta, E.4    Folkers, G.5    La Teana, A.6
  • 30
    • 0029051704 scopus 로고
    • Specific protection of 16S rRNA by translational initiation factors
    • Moazed, D., Samaha, R.R., Gualerzi, C. Noller, H.F. (1995) Specific protection of 16S rRNA by translational initiation factors. J Mol Biol 248 : 207 210.
    • (1995) J Mol Biol , vol.248 , pp. 207-210
    • Moazed, D.1    Samaha, R.R.2    Gualerzi, C.3    Noller, H.F.4
  • 31
    • 0034031110 scopus 로고    scopus 로고
    • Post-transcriptional control by global regulators of gene expression in bacteria
    • Nogueira, T. Springer, M. (2000) Post-transcriptional control by global regulators of gene expression in bacteria. Curr Opin Microbiol 3 : 154 158.
    • (2000) Curr Opin Microbiol , vol.3 , pp. 154-158
    • Nogueira, T.1    Springer, M.2
  • 32
    • 0020699590 scopus 로고
    • Chemical modification in situ of Escherichia coli 30S ribosomal proteins by the site-specific reagent pyridoxal phosphate. Inactivation of the aminoacyl-tRNA and mRNA binding sites
    • Ohsawa, H. Gualerzi, C.O. (1983) Chemical modification in situ of Escherichia coli 30S ribosomal proteins by the site-specific reagent pyridoxal phosphate. Inactivation of the aminoacyl-tRNA and mRNA binding sites. J Biol Chem 258 : 150 156.
    • (1983) J Biol Chem , vol.258 , pp. 150-156
    • Ohsawa, H.1    Gualerzi, C.O.2
  • 33
    • 0019492241 scopus 로고
    • Purification and properties of Escherichia coli translational initiation factors
    • Pawlik, R.T., Littlechild, J., Pon, C.L. Gualerzi, C.O. (1981) Purification and properties of Escherichia coli translational initiation factors. Biochem Int 2 : 421 428.
    • (1981) Biochem Int , vol.2 , pp. 421-428
    • Pawlik, R.T.1    Littlechild, J.2    Pon, C.L.3    Gualerzi, C.O.4
  • 34
    • 0035881527 scopus 로고    scopus 로고
    • Translation initiation factor IF3: Two domains, five functions, one mechanism
    • Petrelli, D., La Teana, A., Garofalo, C., Spurio, R., Pon, C.L. Gualerzi, C.O. (2001) Translation initiation factor IF3: two domains, five functions, one mechanism. EMBO J 20 : 4560 4569.
    • (2001) EMBO J , vol.20 , pp. 4560-4569
    • Petrelli, D.1    La Teana, A.2    Garofalo, C.3    Spurio, R.4    Pon, C.L.5    Gualerzi, C.O.6
  • 35
    • 1942467448 scopus 로고    scopus 로고
    • Recent developments in bacterial cold-shock responses
    • Phadtare, S. (2004) Recent developments in bacterial cold-shock responses. Curr Issues Mol Biol 6 : 125 136.
    • (2004) Curr Issues Mol Biol , vol.6 , pp. 125-136
    • Phadtare, S.1
  • 36
    • 0021506620 scopus 로고
    • Mechanism of protein biosynthesis in prokaryotic cells. Effect of initiation factor IF1 on the initial rate of 30S initiation complex formation
    • Pon, C.L. Gualerzi, C.O. (1984) Mechanism of protein biosynthesis in prokaryotic cells. Effect of initiation factor IF1 on the initial rate of 30S initiation complex formation. FEBS Lett 175 : 203 207.
    • (1984) FEBS Lett , vol.175 , pp. 203-207
    • Pon, C.L.1    Gualerzi, C.O.2
  • 37
    • 28844466803 scopus 로고    scopus 로고
    • Repression of transcription by curved DNA and nucleoid protein H-NS: A mode of bacterial gene regulation
    • In. Ohyama, T., (ed.). Georgetown, TX: Landes Biosciences, pp.
    • Pon, C.L., Stella, S. Gualerzi, C.O. (2005) Repression of transcription by curved DNA and nucleoid protein H-NS: a mode of bacterial gene regulation. In DNA Conformation and Transcription. Ohyama, T., (ed.). Georgetown, TX : Landes Biosciences, pp. 50 65.
    • (2005) DNA Conformation and Transcription. , pp. 50-65
    • Pon, C.L.1    Stella, S.2    Gualerzi, C.O.3
  • 38
    • 9644284618 scopus 로고    scopus 로고
    • Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: Evidence for a 'cold shock degradosome'
    • Prud'homme-Généreux, A., Beran, R.K., Iost, I., Ramey, C.S., Mackie, G.A. Simons, R.W. (2004) Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'. Mol Microbiol 54 : 1409 1421.
    • (2004) Mol Microbiol , vol.54 , pp. 1409-1421
    • Prud'Homme-Généreux, A.1    Beran, R.K.2    Iost, I.3    Ramey, C.S.4    MacKie, G.A.5    Simons, R.W.6
  • 39
    • 0028175534 scopus 로고
    • Purification of fMet-tRNAfMet by fast protein liquid chromatography
    • Rodnina, M.V., Semenkov, Y.P. Wintermeyer, W. (1994) Purification of fMet-tRNAfMet by fast protein liquid chromatography. Anal Biochem 219 : 380 381.
    • (1994) Anal Biochem , vol.219 , pp. 380-381
    • Rodnina, M.V.1    Semenkov, Y.P.2    Wintermeyer, W.3
  • 41
    • 28844491363 scopus 로고    scopus 로고
    • Environmental control of the in vivo oligomerization of nucleoid protein H-NS
    • Stella, S., Falconi, M., Lammi, M., Gualerzi, C.O. Pon, C.L. (2006) Environmental control of the in vivo oligomerization of nucleoid protein H-NS. J Mol Biol 335 : 169 174.
    • (2006) J Mol Biol , vol.335 , pp. 169-174
    • Stella, S.1    Falconi, M.2    Lammi, M.3    Gualerzi, C.O.4    Pon, C.L.5
  • 42
    • 0017346649 scopus 로고
    • Function of initiation factor 1 in the binding and release of initiation factor 2 from ribosomal initiation complexes in Escherichia coli
    • Stringer, E.A., Sarkar, P. Maitra, U. (1977) Function of initiation factor 1 in the binding and release of initiation factor 2 from ribosomal initiation complexes in Escherichia coli. J Biol Chem 252 : 1739 1744.
    • (1977) J Biol Chem , vol.252 , pp. 1739-1744
    • Stringer, E.A.1    Sarkar, P.2    Maitra, U.3
  • 43
    • 14244256556 scopus 로고    scopus 로고
    • Genome-wide analysis of the general stress response network in Escherichia coli: SigmaS-dependent genes, promoters, and sigma factor selectivity
    • Weber, H., Polen, T., Heuveling, J., Wendisch, V.F. Hengge, R. (2005) Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity. J Bacteriol 187 : 1591 1603.
    • (2005) J Bacteriol , vol.187 , pp. 1591-1603
    • Weber, H.1    Polen, T.2    Heuveling, J.3    Wendisch, V.F.4    Hengge, R.5
  • 44
    • 0041909570 scopus 로고    scopus 로고
    • Bacterial cold shock responses
    • Weber, M.H. Marahiel, M.A. (2003) Bacterial cold shock responses. Sci Prog 86 : 9 75.
    • (2003) Sci Prog , vol.86 , pp. 9-75
    • Weber, M.H.1    Marahiel, M.A.2
  • 45
    • 0035205430 scopus 로고    scopus 로고
    • Complementation of cold shock proteins by translation initiation factor IF1 in vivo
    • Weber, M.H., Beckering, C.L. Marahiel, M.A. (2001) Complementation of cold shock proteins by translation initiation factor IF1 in vivo. J Bacteriol 183 : 7381 7386.
    • (2001) J Bacteriol , vol.183 , pp. 7381-7386
    • Weber, M.H.1    Beckering, C.L.2    Marahiel, M.A.3
  • 46
    • 0020709956 scopus 로고
    • Effect of Escherichia coli initiation factors on the kinetics of N-AcPhe-tRNAPhe binding to 30S ribosomal subunits. a fluorescence stopped-flow study
    • Wintermeyer, W. Gualerzi, C. (1983) Effect of Escherichia coli initiation factors on the kinetics of N-AcPhe-tRNAPhe binding to 30S ribosomal subunits. A fluorescence stopped-flow study. Biochemistry 22 : 690 694.
    • (1983) Biochemistry , vol.22 , pp. 690-694
    • Wintermeyer, W.1    Gualerzi, C.2
  • 47
    • 0035046480 scopus 로고    scopus 로고
    • Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli
    • Yamanaka, K. Inouye, M. (2001) Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli. J Bacteriol 183 : 2808 2816.
    • (2001) J Bacteriol , vol.183 , pp. 2808-2816
    • Yamanaka, K.1    Inouye, M.2
  • 48
    • 0026459388 scopus 로고
    • Histone-like proteins are required for cell growth and constraint of supercoils in DNA
    • Yasuzawa, K., Hayashi, N., Goshima, N., Kohno, K., Imamoto, F. Kano, Y. (1992) Histone-like proteins are required for cell growth and constraint of supercoils in DNA. Gene 122 : 9 15.
    • (1992) Gene , vol.122 , pp. 9-15
    • Yasuzawa, K.1    Hayashi, N.2    Goshima, N.3    Kohno, K.4    Imamoto, F.5    Kano, Y.6
  • 49
    • 0025049858 scopus 로고
    • The signal for growth rate control and stringent sensitivity in E. coli is not restricted to a particular sequence motif within the promoter region
    • Zacharias, M., Göringer, H.U. Wagner, R. (1990) The signal for growth rate control and stringent sensitivity in E. coli is not restricted to a particular sequence motif within the promoter region. Nucleic Acids Res 18 : 6271 6275.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6271-6275
    • Zacharias, M.1    Göringer, H.U.2    Wagner, R.3
  • 50
    • 0033923957 scopus 로고    scopus 로고
    • Transcriptional and post-transcriptional control of polynucleotide phosphorylase during cold acclimation in Escherichia coli
    • Zangrossi, S., Briani, F., Ghisotti, D., Regonesi, M.E., Tortora, P. Dehò, G. (2000) Transcriptional and post-transcriptional control of polynucleotide phosphorylase during cold acclimation in Escherichia coli. Mol Microbiol 36 : 1470 1480.
    • (2000) Mol Microbiol , vol.36 , pp. 1470-1480
    • Zangrossi, S.1    Briani, F.2    Ghisotti, D.3    Regonesi, M.E.4    Tortora, P.5    Dehò, G.6


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