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Volumn 53, Issue 1, 2007, Pages 116-128

Heterogeneity between 16S ribosomal RNA gene copies borne by one Desulfitobacterium strain is caused by different 100-200 bp insertions in the 5′ region

Author keywords

16S ribosomal RNA genes; Desulfitobacterium; Fluorescence in situ hybridization; Gene insertions; Heterogeneity

Indexed keywords

BACTERIA; ELECTROPHORESIS; ENZYME KINETICS; GENES; RNA;

EID: 34247392753     PISSN: 00084166     EISSN: None     Source Type: Journal    
DOI: 10.1139/W06-111     Document Type: Article
Times cited : (13)

References (37)
  • 1
    • 0141592793 scopus 로고    scopus 로고
    • Extremely acidophilic protists from acid mine drainage host Rickettsiales- lineage endosymbionts that have intervening sequences in their 16S rRNA genes
    • Baker, B.J., Hugenholtz, P., Dawson, S.C., and Banfield, J.F. 2003. Extremely acidophilic protists from acid mine drainage host Rickettsiales- lineage endosymbionts that have intervening sequences in their 16S rRNA genes. Appi. Environ. Microbiol. 69: 5512-5518.
    • (2003) Appi. Environ. Microbiol , vol.69 , pp. 5512-5518
    • Baker, B.J.1    Hugenholtz, P.2    Dawson, S.C.3    Banfield, J.F.4
  • 2
    • 0029059329 scopus 로고
    • Prokaryotic introns and inteins: A panoply of form and function
    • Belfort, M., Reaban, M.E., Coetzee, T., and Dalgaard, J.Z. 1995. Prokaryotic introns and inteins: a panoply of form and function. J. Bacteriol. 177: 3897-3903.
    • (1995) J. Bacteriol , vol.177 , pp. 3897-3903
    • Belfort, M.1    Reaban, M.E.2    Coetzee, T.3    Dalgaard, J.Z.4
  • 3
    • 0029798414 scopus 로고    scopus 로고
    • Isolation and characterization of Desulfito-bacterium frappieri sp nov, an anaerobic bacterium which reductively dechlorinates pentachlorophenol to 3-chlorophenol
    • Bouchard, B., Beaudet, R., Villemur, R., McSween, G., Lepine, F., and Bisaillon, J.G. 1996. Isolation and characterization of Desulfito-bacterium frappieri sp nov, an anaerobic bacterium which reductively dechlorinates pentachlorophenol to 3-chlorophenol. Int. J. Syst. Bacteriol. 46: 1010-1015.
    • (1996) Int. J. Syst. Bacteriol , vol.46 , pp. 1010-1015
    • Bouchard, B.1    Beaudet, R.2    Villemur, R.3    McSween, G.4    Lepine, F.5    Bisaillon, J.G.6
  • 4
  • 5
    • 0035097518 scopus 로고    scopus 로고
    • Analysis of a 2,4,6-trichlorophenol-dehalogenating enrichment culture and isolation of the dehalogenating member Desulfitobacterium frappieri strain TCP-A
    • Breitenstein, A., Saano, A., Salkinoja-Salonen, M., Andreesen, J.R., and Lechner, U. 2001. Analysis of a 2,4,6-trichlorophenol-dehalogenating enrichment culture and isolation of the dehalogenating member Desulfitobacterium frappieri strain TCP-A. Arch. Microbiol. 175: 133-142.
    • (2001) Arch. Microbiol , vol.175 , pp. 133-142
    • Breitenstein, A.1    Saano, A.2    Salkinoja-Salonen, M.3    Andreesen, J.R.4    Lechner, U.5
  • 6
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
    • Brosius, J., Dull, T.J., Sleeter, D.D., and Noller, H.F. 1981. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol. 148: 107-127.
    • (1981) J. Mol. Biol , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.J.2    Sleeter, D.D.3    Noller, H.F.4
  • 7
    • 0025169751 scopus 로고
    • The excision of intervening sequences from Salmonella 23S ribosomal RNA
    • Burgin, A.B., Parados, K., Lane, D.J., and Pace, N.R. 1990. The excision of intervening sequences from Salmonella 23S ribosomal RNA. Cell, 60: 405-414.
    • (1990) Cell , vol.60 , pp. 405-414
    • Burgin, A.B.1    Parados, K.2    Lane, D.J.3    Pace, N.R.4
  • 8
    • 2942571539 scopus 로고    scopus 로고
    • Cannone, J.J., Subramanian, S., Schnare, M.N., Collett, J.R., D'Souza, L.M., Du, Y., Feng, B., Lin, N., Madabusi, L.V., Muller, K.M., Pande, N., Shang, Z., Yu, N., and Gutell, R.R. 2002. The comparative RNA web (CRW) site: an online data-base of comparative sequence and structure information for ribosomal, intron, and other RNAs. BioMed Central Bioinformatics, 3: 2 [Correction: BioMed Central Bioinformatics. 3: 15].
    • Cannone, J.J., Subramanian, S., Schnare, M.N., Collett, J.R., D'Souza, L.M., Du, Y., Feng, B., Lin, N., Madabusi, L.V., Muller, K.M., Pande, N., Shang, Z., Yu, N., and Gutell, R.R. 2002. The comparative RNA web (CRW) site: an online data-base of comparative sequence and structure information for ribosomal, intron, and other RNAs. BioMed Central Bioinformatics, 3: 2 [Correction: BioMed Central Bioinformatics. 3: 15].
  • 9
    • 0029931803 scopus 로고    scopus 로고
    • Desulfitobacterium haf-niense sp nov, an anaerobic, reductively dechlorinating bacterium
    • Christiansen, N., and Ahring, B.K. 1996. Desulfitobacterium haf-niense sp nov, an anaerobic, reductively dechlorinating bacterium. Int. J. Syst. Bacteriol. 46: 442-448.
    • (1996) Int. J. Syst. Bacteriol , vol.46 , pp. 442-448
    • Christiansen, N.1    Ahring, B.K.2
  • 11
    • 0030458408 scopus 로고    scopus 로고
    • Functional Escherichia coli 23S rRNAs containing processed and unpro-cessed intervening sequences from Salmonella typhimurium
    • Gregory, S.T., O'Connor, M., and Dahlberg, A.E. 1996. Functional Escherichia coli 23S rRNAs containing processed and unpro-cessed intervening sequences from Salmonella typhimurium. Nucleic Acids Res. 24: 4918-4923.
    • (1996) Nucleic Acids Res , vol.24 , pp. 4918-4923
    • Gregory, S.T.1    O'Connor, M.2    Dahlberg, A.E.3
  • 12
    • 0037309169 scopus 로고    scopus 로고
    • Rates and consequences of recombination between rRNA operons
    • Hashimoto, J.Q., Stevenson, B.S., and Schmidt, T.M. 2003. Rates and consequences of recombination between rRNA operons. J. Bacteriol. 185: 966-972.
    • (2003) J. Bacteriol , vol.185 , pp. 966-972
    • Hashimoto, J.Q.1    Stevenson, B.S.2    Schmidt, T.M.3
  • 13
    • 0027199784 scopus 로고
    • A highly purified enrichment culture couples the reductive dechlorination of tetrachloroethene to growth
    • Holliger, C., Schraa, G., Stams, A.J., and Zehnder, A.J. 1993. A highly purified enrichment culture couples the reductive dechlorination of tetrachloroethene to growth. Appl. Environ. Microbiol. 59: 2991-2997.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 2991-2997
    • Holliger, C.1    Schraa, G.2    Stams, A.J.3    Zehnder, A.J.4
  • 14
    • 0042285649 scopus 로고    scopus 로고
    • Labbé, N., Juteau, P., Parent, S., and Villemur, R. 2003. Bacterial diversity in a marine methanol-fed denitrification reactor at the Montreal Biodome, Canada. Microb. Ecol. 46: 12-21.
    • Labbé, N., Juteau, P., Parent, S., and Villemur, R. 2003. Bacterial diversity in a marine methanol-fed denitrification reactor at the Montreal Biodome, Canada. Microb. Ecol. 46: 12-21.
  • 15
    • 13544261435 scopus 로고    scopus 로고
    • Desulfitobacterium hafniense is present in a high proportion within the biofilms of a high-performance pentachlorophenol-degrading, methanogenic fixed-film reactor
    • Lanthier, M., Juteau, P., Lepine, F., Beaudet, R., and Villemur, R. 2005. Desulfitobacterium hafniense is present in a high proportion within the biofilms of a high-performance pentachlorophenol-degrading, methanogenic fixed-film reactor. Appl. Environ. Microbiol. 71: 1058-1065.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1058-1065
    • Lanthier, M.1    Juteau, P.2    Lepine, F.3    Beaudet, R.4    Villemur, R.5
  • 16
    • 0141483148 scopus 로고    scopus 로고
    • Phylogenetic analysis of an anaerobic microbial consortium deiodinating 5-amino-2,4,6- triiodoisophthalic acid
    • Lecouturier, D., Godon, J.J., and Lebeault, J.M. 2003. Phylogenetic analysis of an anaerobic microbial consortium deiodinating 5-amino-2,4,6- triiodoisophthalic acid. Appl. Microbiol. Biotechnol. 62: 400-406.
    • (2003) Appl. Microbiol. Biotechnol , vol.62 , pp. 400-406
    • Lecouturier, D.1    Godon, J.J.2    Lebeault, J.M.3
  • 17
    • 0030737779 scopus 로고    scopus 로고
    • Rapid method for detecting Desulfito-bacterium frappieri strain PCP-I in soil by the polymerase chain reaction
    • Lévesque, M.J., La Boissière, S., Thomas, J.C., Beaudet, R., and Villemur, R. 1997. Rapid method for detecting Desulfito-bacterium frappieri strain PCP-I in soil by the polymerase chain reaction. Appl. Microbiol. Biotechnol. 47: 719-725.
    • (1997) Appl. Microbiol. Biotechnol , vol.47 , pp. 719-725
    • Lévesque, M.J.1    La Boissière, S.2    Thomas, J.C.3    Beaudet, R.4    Villemur, R.5
  • 18
    • 0036284215 scopus 로고    scopus 로고
    • Geochemistry and microbial diversity of a trichloroethene-contaminated Superfund site undergoing intrinsic in situ reductive dechlorination
    • Lowe, M., Madsen, E.L., Schindler, K., Smith, C., Emrich, S., Robb, F., and Halden, R.U. 2002. Geochemistry and microbial diversity of a trichloroethene-contaminated Superfund site undergoing intrinsic in situ reductive dechlorination. FEMS Microbiol. Ecol. 40: 123-134.
    • (2002) FEMS Microbiol. Ecol , vol.40 , pp. 123-134
    • Lowe, M.1    Madsen, E.L.2    Schindler, K.3    Smith, C.4    Emrich, S.5    Robb, F.6    Halden, R.U.7
  • 19
    • 10444289906 scopus 로고    scopus 로고
    • Molecular characterization of a dechlorinating community resulting from in situ biostimulation in a trichloroethene-contaminated deep, fractured basalt aquifer and comparison to a derivative laboratory culture
    • Macbeth, T.W., Cummings, D.E., Spring, S., Petzke, L.M., and Sorenson, K.S., Jr. 2004. Molecular characterization of a dechlorinating community resulting from in situ biostimulation in a trichloroethene-contaminated deep, fractured basalt aquifer and comparison to a derivative laboratory culture. Appl. Environ. Microbiol. 70: 7329-7341.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 7329-7341
    • Macbeth, T.W.1    Cummings, D.E.2    Spring, S.3    Petzke, L.M.4    Sorenson Jr., K.S.5
  • 20
    • 0029989632 scopus 로고    scopus 로고
    • Salmonella typhimurium LT2 possesses three distinct 23S rRNA intervening sequences
    • Mattatall, N.R., and Sanderson, K.E. 1996. Salmonella typhimurium LT2 possesses three distinct 23S rRNA intervening sequences. J. Bacteriol. 178: 2272-2278.
    • (1996) J. Bacteriol , vol.178 , pp. 2272-2278
    • Mattatall, N.R.1    Sanderson, K.E.2
  • 21
    • 0029955048 scopus 로고    scopus 로고
    • RNAdraw: An integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows
    • Matzura, O., and Wennborg, A. 1996. RNAdraw: an integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows. Comput. Appl. Biosci. 12: 247-249.
    • (1996) Comput. Appl. Biosci , vol.12 , pp. 247-249
    • Matzura, O.1    Wennborg, A.2
  • 22
    • 0035656384 scopus 로고    scopus 로고
    • Isolation and characterization of a novel As(V)-reducing bacterium: Implications for arsenic mobilization and the genus Desulfitobacterium
    • Niggemyer, A., Spring, S., Stackebrandt, E., and Rosenzweig, R.F. 2001. Isolation and characterization of a novel As(V)-reducing bacterium: implications for arsenic mobilization and the genus Desulfitobacterium. Appl. Environ. Microbiol. 67: 5568-5580.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 5568-5580
    • Niggemyer, A.1    Spring, S.2    Stackebrandt, E.3    Rosenzweig, R.F.4
  • 23
    • 33644854231 scopus 로고    scopus 로고
    • Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195
    • Nonaka, H., Keresztes, G., Shinoda, Y., Ikenaga, Y., Abe, M., Naito, K., Inatomi, K., Furukawa, K., Inui, M., and Yukawa, H. 2006. Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195. J. Bacteriol. 188: 2262-2274.
    • (2006) J. Bacteriol , vol.188 , pp. 2262-2274
    • Nonaka, H.1    Keresztes, G.2    Shinoda, Y.3    Ikenaga, Y.4    Abe, M.5    Naito, K.6    Inatomi, K.7    Furukawa, K.8    Inui, M.9    Yukawa, H.10
  • 24
    • 0026731987 scopus 로고
    • Helix 6 of the 16S rRNA of the bacterium Desulfotomaculum australicum exhibits an unusual structural idiosyncrasy
    • Patel, B.K., Love, C.A., and Stackebrandt, E. 1992. Helix 6 of the 16S rRNA of the bacterium Desulfotomaculum australicum exhibits an unusual structural idiosyncrasy. Nucleic Acids Res. 20: 5483.
    • (1992) Nucleic Acids Res , vol.20 , pp. 5483
    • Patel, B.K.1    Love, C.A.2    Stackebrandt, E.3
  • 25
    • 2142853093 scopus 로고    scopus 로고
    • Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI)
    • Petrie, L., North, N.N., Dollhopf, S.L., Balkwill, D.L., and Kostka, J.E. 2003. Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI). Appl. Environ. Microbiol. 69: 7467-7479.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 7467-7479
    • Petrie, L.1    North, N.N.2    Dollhopf, S.L.3    Balkwill, D.L.4    Kostka, J.E.5
  • 26
    • 0034801526 scopus 로고    scopus 로고
    • Intervening sequences in rrl genes and fragmentation of 23S rRNA in genera of the family Enterobacteriaceae
    • Pronk, L.M., and Sanderson, K.E. 2001. Intervening sequences in rrl genes and fragmentation of 23S rRNA in genera of the family Enterobacteriaceae. J. Bacteriol. 183: 5782-5787.
    • (2001) J. Bacteriol , vol.183 , pp. 5782-5787
    • Pronk, L.M.1    Sanderson, K.E.2
  • 27
    • 0027496902 scopus 로고
    • Phylogenetic analysis of Desulfotomaculum thermobenzoicum using polymerase chain reaction-amplified 16S rRNA-specific DNA
    • Redbum, A.C., and Patel, B.K.C. 1993. Phylogenetic analysis of Desulfotomaculum thermobenzoicum using polymerase chain reaction-amplified 16S rRNA-specific DNA. FEMS Microbiol. Lett. 113: 81-86.
    • (1993) FEMS Microbiol. Lett , vol.113 , pp. 81-86
    • Redbum, A.C.1    Patel, B.K.C.2
  • 28
    • 0026769090 scopus 로고
    • Gram-positive bacteria with a high DNA G+C content are characterized by a common insertion within their 23S rRNA genes
    • Roller, C., Ludwig, W., and Schleifer, K.H. 1992. Gram-positive bacteria with a high DNA G+C content are characterized by a common insertion within their 23S rRNA genes. J. Gen. Microbiol. 138: 1167-1175.
    • (1992) J. Gen. Microbiol , vol.138 , pp. 1167-1175
    • Roller, C.1    Ludwig, W.2    Schleifer, K.H.3
  • 30
    • 0342758699 scopus 로고    scopus 로고
    • Bacteria of an anaerobic 1,2-dichloropropane-dechlorinating mixed culture are phylo-genetically related to those of other anaerobic dechlorinating consortia
    • Schlotelburg, C., von Wintzingerode, F., Hauck, R., Hegemann, W., and Gobel, U.B. 2000. Bacteria of an anaerobic 1,2-dichloropropane-dechlorinating mixed culture are phylo-genetically related to those of other anaerobic dechlorinating consortia. Int. J. Syst. Evol. Microbiol. 50: 1505-1511.
    • (2000) Int. J. Syst. Evol. Microbiol , vol.50 , pp. 1505-1511
    • Schlotelburg, C.1    von Wintzingerode, F.2    Hauck, R.3    Hegemann, W.4    Gobel, U.B.5
  • 31
    • 0024518483 scopus 로고
    • A rapid and efficient "miniprep" for isolation of plasmid DNA
    • Serghini, M.A., Ritzenthaler, C., and Pinck, L. 1989. A rapid and efficient "miniprep" for isolation of plasmid DNA. Nucleic Acids Res. 17: 3604.
    • (1989) Nucleic Acids Res , vol.17 , pp. 3604
    • Serghini, M.A.1    Ritzenthaler, C.2    Pinck, L.3
  • 32
    • 27644589401 scopus 로고    scopus 로고
    • Heterogeneity of the nucleotide sequences of the 16S rRNA genes of the type strain of Desulfotomaculum kuznetsovii
    • Tourova, T.P., Kuznetzov, B.B., Novikova, E.V., Poltaraus, A.B., and Nazina, T.N. 2001. Heterogeneity of the nucleotide sequences of the 16S rRNA genes of the type strain of Desulfotomaculum kuznetsovii. Microbiology (Russia), 70: 678-684.
    • (2001) Microbiology (Russia) , vol.70 , pp. 678-684
    • Tourova, T.P.1    Kuznetzov, B.B.2    Novikova, E.V.3    Poltaraus, A.B.4    Nazina, T.N.5
  • 33
    • 0034940112 scopus 로고    scopus 로고
    • van de Pas, B.A., Harmsen, H.J.M., Raangs, G.C., de Vos, W.M., Schraa, G., and Stams, A.J.M. 2001. A Desulfitobacterium strain isolated from human feces that does not dechlorinate chloroethenes or chlorophenols. Arch. Microbiol. 175: 389-394 (erratum in 176: 391-392).
    • van de Pas, B.A., Harmsen, H.J.M., Raangs, G.C., de Vos, W.M., Schraa, G., and Stams, A.J.M. 2001. A Desulfitobacterium strain isolated from human feces that does not dechlorinate chloroethenes or chlorophenols. Arch. Microbiol. 175: 389-394 (erratum in 176: 391-392).
  • 35
    • 0032960491 scopus 로고    scopus 로고
    • Phylogenetic analysis of an anaerobic, trichlorobenzene transforming microbial consortium
    • von Wintzingerode, F., Selent, B., Hegemann, W., and Gobel, U.B. 1999. Phylogenetic analysis of an anaerobic, trichlorobenzene transforming microbial consortium. Appl. Environ. Microbiol. 65: 283-286.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 283-286
    • von Wintzingerode, F.1    Selent, B.2    Hegemann, W.3    Gobel, U.B.4
  • 36
    • 10644224511 scopus 로고
    • Formation of methane by bacterial extracts
    • Wolin, E.A., Wolin, M.J., and Wolfe, R.S. 1963. Formation of methane by bacterial extracts. J. Biol. Chem. 238: 2882-2886.
    • (1963) J. Biol. Chem , vol.238 , pp. 2882-2886
    • Wolin, E.A.1    Wolin, M.J.2    Wolfe, R.S.3
  • 37
    • 34247357114 scopus 로고    scopus 로고
    • Mobile introns and retroelements in bacteria
    • Edited by P. Mullany. Cambridge University Press, New York, USA. pp
    • Zimmerly, S. 2005. Mobile introns and retroelements in bacteria. In Advances in molecular and cellular microbiology: the dynamic bacterial genome. Edited by P. Mullany. Cambridge University Press, New York, USA. pp. 121-147.
    • (2005) Advances in molecular and cellular microbiology: The dynamic bacterial genome , pp. 121-147
    • Zimmerly, S.1


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