Investigating the structural changes of ß-amyloid peptide aggregation using attenuated-total-reflection surface-enhanced Raman spectroscopy

Progress in Biomedical Optics and Imaging - Proceedings of SPIE

Volumn 6450, Issue , 2007, Pages

  Chiu, K C ^a   Yu, L Y ^a   Yih, J N ^b   Chen, S J ^a  

^a NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

^b NATIONAL KAOHSIUNG UNIVERSITY OF APPLIED SCIENCES   (Taiwan)

Author keywords

DNA secondary structure; Metal nanoparticles; Structural change; Surface enhanced Raman scattering

Indexed keywords

DNA; MOLECULAR STRUCTURE; MONOLAYERS; RAMAN SCATTERING; RAMAN SPECTROSCOPY; SIGNAL TO NOISE RATIO;

DNA SECONDARY STRUCTURE; METAL NANOPARTICLES; STRUCTURAL CHANGE; SURFACE-ENHANCED RAMAN SCATTERING;

PEPTIDES;

EID: 34247341332     PISSN: 16057422     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.701757     Document Type: Conference Paper

References (28)

1. E. Southern, K. Mir, and M. Shchepinov, "Molecular interactions on microarrays,"Nat. Genet. 21, 5-9 (1999).
2. T. L. Ferea and P. O. Brown, "Observing the living genome," Curr. Opin. Genet. Dev. 9, 715-722 (1999).
3. C. A. Harrington, C. Rosenow, and J. Retief, "Monitoring gene expression using DNA microarrays," Curr. Opin. Microbiol. 3, 285-291 (2000).
4. E. C. Nice and B. Catimel, "Instrumental biosensors: new perspectives for the analysis of biomolecular interactions," Bioassays 21, 339-352 (1999).
5. C. Williams and T. A. Addona, "The integration of SPR biosensors with mass, spectrometry: possible applications for proteome analysis.," Trends Biotechnol. 18, 45-48 (2000).
6. J. G. Quinn, S. O'Neill, A Doyle, C. McAtamney, D. Diamond, B. D. MacCraith, and R. O'Kennedy, "Development and application of surface plasmon resonance-based biosensors for the detection of cell-ligand interactions," Anal. Biochem. 281, 135-143 (2000).
7. D. J. Winzor, "Surface plasmon resonance as a probe of protein isomerization," Anal. Biochem. 318, 1-12 (2003).
8. A. W. Peterson, L. K. Wolf, and R. M. Georgiadis, "Hybridization of Mismatched or Partially Matched DNA at Surfaces," J. Am. Chem. Soc. 124, 14601-14607 (2002).
9. A. Kobori, S. Horie, H. Suda, I. Saito, and K. Nakatani, "The SPR sensor detecting the cytosine-cytosine mismatches," J. Am. Chem. Soc. 126, 557-562 (2004).
10. R. Levicky, T. M. Herne, M. J. Tarlov, and S. K. Satija, "Using self-assembly to control the structure of DNA monolayers on gold: A neutron reflectivity study," J. Am. Chem. Soc. 120, 9787-9792 (1998).
11. A. W. Peterson, R. J. Heaton, and R. M. Georgiadis, "The effect of surface probe density on DNA hybridization," Nucleic Acids Res. 29, 5163-5168 (2001).
12. J. H. Watterson, P. A. E. Piunno, C. C. Wust, and U. J. Krull, "Thermodynamic considerations for the quantitative transduction of hybridization of immobilized DNA: Effects of immobilization density on selectivity," Langmuir 16, 4984-4992 (2000).
13. A. B. Steel, R. L. Levicky, T. M. Herne, and M. J. Tarlov, "Immobilization of Nucleic Acids at Solid Surfaces: Effect of Oligonucleotide Length on Layer Assembly," Biophys. J. 79, 975-981 (2000).
14. M. S. Shchepinov, S. C. Case-Green, and E. M. Southern, "factors influencing hybridization of nucleic acids to oligonucleotide arrays," Nucleic Acids Res. 25, 1155-1161 (1997).
15. D. Rentzeperis, K. Alessi, and L. A. Marky, "Thermodynamics of DNA hairpins: contribution of loop size to hairpin stability and ethidium binding," Nucleic Acids Res. 21, 2683-2689 (1993).
16. D. J. Williams and K. B. Hall, "Thermodynamic Comparison of the Salt Dependence of Natural RNA Hairpins and RNA Hairpins with Non-Nucleotide Spacers," Biochemistry 35, 14665-14670 (1996).
17. M. H. Hou, S. B. Lin, J. M. Yuann, W. C. Lin, A. H. Wang, and L. S. Kan, "Effects of polyamines on the thermal stability and formation kinetics of DNA duplexes with abnormal structure," Nucleic Acids Res. 29, 5121-5128 (2001).
18. Y. D. He, H. Dai, E. E. Schadt, G. Cavet, S. W. Edwards, S. B. Stepaniants, S. Duenwald, R. Kleinhanz, A. R. Jones, D. D. Shoemaker, and R. B. Stoughton, "Microarray standard data set and figures of merit for comparing data processing methods and experiment designs.," Bioinformatics 19, 956 (2003).
19. K. Kneipp, Y. Wang, H. Kneipp, L. T. Perelman, and I. Itzkan, "Single molecule detection using surface-enhanced Raman scattering (SERS)," Phys. Rev. Lett. 78, 1667-1670 (1997).
20. A. D. Dayan and A. J. Paine, "Mechanism of chromium toxicity, carcinogenicity and allergenicity: review of the literature from 1985 to 2000," Hum. Exp. Toxicol. 20, 439-451 (2001).
21. B, Hecht, H. Bielefeldt, L. Novotny, Y. Inouye, and D. W. Pohl, "Local Excitation, Scattering, and Interference of Surface Plasmons," Phys. Rev, Lett. 77, 1889-1892 (1996).
22. M. C. Chen, S. D. Tsai, M. R. Chen, S. Y. Ou, W.-H. Li, and K. C. Lee, "Effect of silver-nanoparticle aggregation on surface-enhanced Raman scattering from benzoic acid," Phys. Rev, B, 51, 4507-4515 (1995).
23. J.-N. Yih, F.-C. Chien, C.-Y. Lin, H.-F. Yau, and S.-J. Chen, "An angular-interrogation attenuated-total-reflection metrology system for plasmonic sensors," Appl. Opt. 44, 6155-6162 (2005).
24. F.-C. Chien, J.-S. Liu, H.-J. Su, L.-A. Kao, C.-F. Chiou, W.-Y. Chen, and S.-J. Chen, "An investigation into the influence of secondary structures on DNA hybridization using surface plasmon resonance biosensing," Chemical Physics Letters 397, 429-434 (2004).
25. P. C. Lee and D. Meisel, "Adsorption and surface-enhanced Raman of dyes on silver and gold sols," J. Phys. Chem. 86, 3391-3395 (1982).
26. R. C. Lord and G. J. Thomas, "Raman spectral studies of nucleic acids and related molecules-I Ribonucleic acid derivatives," Spectrochimica Acta. 23A, 2551-2591 (1967).
27. K. Szczepaniak, M. M. Szczesniak, and W. B. Person, "Raman and infrared spectra of thymine. a matrix isolation and DFT study," J. Phys. Chem. A 104, 3852-3863 (2000).
28. L. Movileanu, J. M. Benevides, and G. J. Thomas, "Temperature dependence of the Raman spectrum of DNA. Part I - Raman signatures of premelting and melting transitions of poly(dA-dT).poly(dA-dT)" J. Raman Spectrosc. 30, 637-649 (1999).