Lipophilic oligonucleotides spontaneously insert into lipid membranes, bind complementary DNA strands, and sequester into lipid-disordered domains

Langmuir

Volumn 23, Issue 8, 2007, Pages 4455-4464

  Bunge, Andreas ^a   Kurz, Anke ^b   Windeck, Anne Kathrin ^b   Korte, Thomas ^b   Flasche, Wolfgang ^b   Liebscher, Jürgen ^b   Herrmann, Andreas ^b   Huster, Daniel ^a  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^b HUMBOLDT UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING SITES; BIOLOGICAL MEMBRANES; DNA SEQUENCES; LIPIDS; NUCLEIC ACIDS; SYNTHESIS (CHEMICAL);

LIPID MEMBRANES; LIPOPHILIC OLIGONUCLEOTIDES; MOLECULAR RECOGNITION MECHANISMS; SURFACE FUNCTIONALIZED BILAYERS;

OLIGONUCLEOTIDES;

DNA; LIPID; OLIGONUCLEOTIDE; PROTON;

ARTICLE; CELL MEMBRANE; CHEMICAL MODEL; CHEMISTRY; DIFFERENTIAL SCANNING CALORIMETRY; ELECTRON SPIN RESONANCE; FLUORESCENCE MICROSCOPY; METABOLISM; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PHYSICAL CHEMISTRY; SPECTROFLUOROMETRY; STATISTICAL MODEL; SURFACE PROPERTY;

CALORIMETRY, DIFFERENTIAL SCANNING; CELL MEMBRANE; CHEMISTRY, PHYSICAL; DNA; ELECTRON SPIN RESONANCE SPECTROSCOPY; LIPIDS; MAGNETIC RESONANCE SPECTROSCOPY; MEMBRANE MICRODOMAINS; MICROSCOPY, FLUORESCENCE; MODELS, CHEMICAL; MODELS, STATISTICAL; OLIGONUCLEOTIDES; PROTONS; SPECTROMETRY, FLUORESCENCE; SURFACE PROPERTIES;

EID: 34247341014     PISSN: 07437463     EISSN: None     Source Type: Journal    
DOI: 10.1021/la063188u     Document Type: Article

References (52)

1. Casey, P. J. Science 1995, 268, 221-225.
2. Boutorin, A. S.; Guœkova, L. V.; Ivanova, E. M.; Kobetz, N. D.; Zarytova, V. F.; Ryte, A. S.; Yurchenko, L. V.; Vlassov, V. V. FEBS Lett. 1989, 254, 129-132.
3. Shea, R. G.; Marsters, J. C.; Bischofberger, N. Nucleic Acids Res. 1990, 18, 3777-3783.
4. MacKellar, C.; Graham, D.; Will, D. W.; Burgess, S.; Brown, T. Nucleic Acids Res. 1992, 20, 3411-3417.
5. Bonaccio, S.; Walde, P.; Luisi, P. L. J. Phys. Chem. 1994, 98, 6661-6663.
6. Tomkins, J. M.; Barnes, K. J.; Blaker, A. J.; Watkins, W. J.; Abell, C. Tetrahedron Lett. 1997, 38, 691-694.
7. Krieg, A. M.; Tonkinson, J.; Matson, S.; Zhao, Q.; Saxon, M.; Zhang, L. M.; Bhanja, U.; Yakubov, L.; Stein, C. A. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 1048-1052.
8. Lorenz, C.; Hadwiger, P.; John, M.; Vornlocher, H. P.; Unverzagt, C. Bioorg. Med. Chem. Lett. 2004, 14, 4975-4977.
9. Soutschek, J.; Akinc, A.; Bramlage, B.; Charisse, K.; Constien, R.; Donoghue, M.; Elbashir, S.; Geick, A.; Hadwiger, P.; Harborth, J.; John, M.; Kesavan, V.; Lavine, G.; Pandey, R. K.; Racie, T.; Rajeev, K. G.; Rohl, I.; Toudjarska, I.; Wang, G.; Wuschko, S.; Bumcrot, D.; Koteliansky, V.; Limmer, S.; Manoharan, M.; Vornlocher, H. P. Nature 2004, 432, 173-178.
10. Yoshina-Ishii, C.; Boxer, S. G. J. Am. Chem. Soc. 2003, 125, 3696-3697.
11. Parton, R. G.; Richards, A. A. Traffic 2003, 4, 724-738.
12. Pfeiffer, I.; Höök, F. J. Am. Chem. Soc. 2004, 126, 10224-10225.
13. Gosse, C.; Boutorine, A.; Aujard, I.; Chami, M.; Kononov, A.; Cogné-Laage, E.; Allemand, J.-F.;Li, J.; Jullien, L. J. Phys. Chem. B 2004, 108, 6485-6497.
14. Peitzsch, R. M.; McLaughlin, S. Biochemistry 1993, 32, 10436-10443.
15. Schroeder, H.; Leventis, R.; Rex, S.; Schelhaas, M.; Nagele, E.; Waldmann, H.; Silvius, J. R. Biochemistry 1997, 36, 13102-13109.
16. Kurz, A.; Bunge, A.; Windeck, A.-K.; Rost, M.; Flasche, W.; Arbuzova, A.; Strobach, D.; Müller, S.; Liebscher, J.; Huster, D.; Herrmann, A. Angew. Chem., Int. Ed. 2006, 45, 4440-4444.
17. Beaucage, S. L.; Iyer, R. P. Tetrahedron 1992, 48, 2223-2311.
18. Flasche, W.; Cismas, C.; Hermann, A.; Liebscher, J. Synthesis 2004, 2335-2341.
19. Hope, M. J.; Bally, M. B.; Webb, G.; Cullis, P. R. Biochim. Biophys. Acta 1985, 812, 55-65.
20. Angelova, M.; Soleau, S.; Meleard, P.; Faucon, J. F.; Bothorel, P. Prog. Lipid Res. 1992, 89, 127-131.
21. Mathivet, L.; Cribier, S.; Devaux, P. F. Biophys. J. 1996, 70, 1112-1121.
22. Hahn, E. L. Phys. Rev. 1950, 80, 580-594.
23. Davis, J. H.; Jeffrey, K. R.; Bloom, M.; Valic, M. I.; Higgs, T. P. Chem. Phys. Lett. 1976, 42, 390-394.
24. McCabe, M. A.; Wassail, S.R.J. Magn. Reson., Ser. B 1995, 106, 80-82.
25. Huster, D.; Arnold, K.; Gawrisch, K. Biochemistry 1998, 37, 17299-17308.
26. Jeener, J.; Meier, B. H.; Bachmann, P.; Ernst, R. R. J. Chem. Phys. 1979, 71, 4546-4553.
27. Morse, P. D.; Lusczakoski, D. M.; Simpson, D. A. Biochemistry 1979, 18, 5021-5029.
28. Keith, A.; Bulfield, G.; Snipes, W. Biophys. J. 1970, 10, 618-629.
29. Seelig, J. Biochim. Biophys. Acta 1978, 515, 105-140.
30. Seelig, J.; Seelig, A. Q. Rev. Biophys. 1980, 13, 19-61.
31. Huster, D.; Gawrisch, K. New insights into biomembrane structure from two-dimensional nuclear Overhauser enhancement spectroscopy. In Lipid Bilayers: Structure and Interactions; Katsaras, J., Gutberlet, T., Eds.; Springer-Verlag: Berlin, 2000; pp 109-125.
32. Huster, D.; Gawrisch, K. J. Am. Chem. Soc. 1999, 121, 1992-1993.
33. Rädler, J. O.; Koltover, I.; Salditt, T.; Safinya, C. R. Science 1997, 275, 810-814.
34. Murray, D.; Ben-Tal, N.; Honig, B.; McLaughlin, S. Structure 1997, 5, 985-989.
35. LaPlante, S. R.; Boudreau, E. A.; Zanatta, N.; Levy, G. C.; Borer, P. N.; Ashcroft, J.; Cowburn, D. Biochemistry 1988, 27, 7902-7909.
36. Kielkopf, C. L.; White, S.; Szewczyk, J. W.; Turner, J. M.; Baird, E. E.; Dervan, P. B.; Rees, D. C. Science 1998, 282, 111-115.
37. Dietrich, C.; Bagatolli, L. A.; Volovyk, Z. N.; Thompson, N. L.; Levi, M.; Jacobson, K.; Gratton, E, Biophys. J. 2001, 80, 1417-1428.
38. Korlach, J.; Schwille, P.; Webb, W. W.; Feigenson, G. W. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 8461-8466.
39. Bacia, K.; Schwille, P.; Kurzchalia, T. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 3272-3277.
40. Williamson, P.; Mattocks, K.; Schlegel, R. A. Biochim. Biophys. Acta. 1983, 732, 387-393.
41. Mirkin, C. A. Inorg. Chem. 2000, 39, 2258-2272.
42. Niemeyer, C. M. Curr. Opin. Chem. Biol. 2000, 4, 609-618.
43. Park, S. J.; Taton, T. A.; Mirkin, C. A. Science 2002, 295, 1503-1506.
44. Scheidt, H. A.; Flasche, W.; Cismas, C.; Rost, M.; Herrmann, A.; Liebscher, J.; Huster, D. J. Phys. Chem. B 2004, 108, 16279-16287.
45. Bonaccio, S.; Capitani, D.; Segre, A. L.; Walde, P.; Luisi, P. L. Langmuir 1997, 13, 1952-1956.
46. Huster, D.; Paasche, G.; Dietrich, U.; Gutberlet, T.; Zschörnig, O.; Gawrisch, K.; Arnold, K. Biophys. J. 1999, 77, 879-887.
47. Moiseev, L.; Unlu, M. S.; Swan, A. K.; Goldberg, B. B.; Cantor, C. R. Proc. Nati. Acad. Sci. U.S.A. 2006, 103, 2623-2628.
48. Varma, R.; Mayor, S. Nature 1998, 394, 798-801.
49. Friedrichson, T.; Kurzchalia, T. V. Nature 1998, 394, 802-805.
50. Nicolini, C.; Baranski, J.; Schlummer, S.; Palomo, J.; Lumbierres-Burgues, M.; Kahms, M.; Kuhlmann, J.; Sanchez, S.; Gratton, E.; Waldmann, H.; Winter, R. J. Am. Chem. Soc. 2006, 128, 192-201.
51. Shogomori, H.; Hammond, A. T.; Ostermeyer-Fay, A. G.; Barr, D. J.; Feigenson, G. W.; London, E.; Brown, D. A. J. Biol. Chem. 2005, 280, 18931-18942.
52. Wang, T. Y.; Leventis, R.; Silvius, J. R. Biochemistry 2001, 40, 13031-13040.