Development of two microsatellite multiplex systems for black tiger shrimp Penaeus monodon and its application in genetic diversity study for two populations

Aquaculture

Volumn 266, Issue 1-4, 2007, Pages 279-288

  Li, Yutao ^a   Wongprasert, Kanokpan ^b   Shekhar, Mudagandur ^c   Ryan, Jennifer ^a   Dierens, Leanne ^a   Meadows, Jennifer ^a   Preston, Nigel ^a   Coman, Greg ^a   Lyons, Russell E ^a  

^a CSIRO   (Australia)

^b MAHIDOL UNIVERSITY   (Thailand)

^c ICAR CENTRAL INSTITUTE OF BRACKISHWATER AQUACULTURE   (India)

Author keywords

Genetic diversity; Microsatellite markers; Multiplex systems; Penaeus monodon

Indexed keywords

BIOMARKER; CRUSTACEAN; DNA FINGERPRINTING; GENETIC VARIATION; POLYMORPHISM; POPULATION GENETICS;

ASIA; AUSTRALASIA; AUSTRALIA; EURASIA; SOUTHEAST ASIA; THAILAND;

ANIMALIA; DECAPODA (CRUSTACEA); PENAEUS MONODON; TETRA;

EID: 34247327792     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2007.01.038     Document Type: Article

References (27)

1. Boudry P., Collet B., Cornette F., Hervouet V., and Bonhomme F. High variance in reproductive success of the Pacific oyster (Crassostrea gigas, Thunberg) revealed by microsatellite-based parentage analysis of multifactorial crosses. Aquaculture 204 (2002) 283-296
2. Brooker A.L., Benzie J.A.H., Blair D., and Versini J.-J. Population structure of the giant tiger prawn Penaeus monodon in Australian waters, determined using microsatellite markers. Mar. Biol. 136 (2000) 149-157
3. Edwards K.J., Barker J.H.A., Daly A., Jones C., and Karp A. Microsatellite libraries enriched for several microsatellite sequences in plants. Biotechniques 20 (1996) 758-760
4. Goudet J. FSTAT, A Program to Estimate and Test Gene Diversities and Fixation Indices (version 2.9.3) (2001). http://www.unil.ch/izea/softwares/fstat.html URL: http://www.unil.ch/izea/softwares/fstat.html.
5. Guo S.W., and Thompson E.A. Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48 (1992) 361-372
6. Hara M., and Sekino M. Efficient detection of parentage in a cultured Japanese flounder Paralichthys olivaceus using microsatellite DNA marker. Aquaculture 217 (2003) 107-114
7. Jarne P., and Lagoda P.J.L. Microsatellites, from molecules to population and back. Trends Ecol. Evol. 11 (1996) 424-429
8. Jerry D.R., Evans B.S., Kenway M., and Wilson K. Development of a microsatellite DNA parentage marker suite for black tiger shrimp Penaeus monodon. Aquaculture 255 (2006) 542-547
9. Lehnert S.A., Wilson K.J., Byrne K., and Moore S.S. Tissue-specific expressed sequence tags from the black tiger shrimp Penaeus monodon. Mar. Biotechnol. 1 (1999) 465-476
10. Liu Z.J., and Cordes J.F. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238 (2004) 1-37
11. Lynch M. The similarity index and DNA fingerprinting. Mol. Biol. Evol. 7 (1990) 478-484
12. Maniatis T., Fritsch E.F., and Sambrook J. Molecular Cloning: A Laboratory Manual (1982), Cold Spring Harbor Laboratories, Cold Spring Harbor, NY
13. Moore S.S., Whan V., Davis G., Byrne K., Hetzel D.J.S., and Preston N. The development and application of genetic markers for the Kuruma prawn Penaeus japonicus and their use in parentage determination and linkage mapping. Aquaculture 173 (1999) 19-32
14. Mousseau T.A., Ritland K., and Heath D.D. A novel method for estimating heritability using molecular markers. Heredity 80 (1998) 218-224
15. Neff B.D., Fu P., and Gross M.R. Microsatellite multiplexing in fish. Trans. Am. Fish. Soc. 129 (2000) 584-593
16. Pan Y.-W., Chou H.-H., You E.-M., and Yu H.-T. Isolation and characterization of 23 polymorphic microsatellite markers for diversity and stock analysis in tiger shrimp (Penaeus monodon). Mol. Ecol. Notes 4 (2004) 345-347
17. Raymond M., and Rousset F. GENEPOP (v.1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86 (1995) 248-249
18. Renshaw M.A., Saillant E., Bradfield S.C., and Cold J.R. Microsatellite multiplex panels for genetic studies of three species of marine fishes: red drum (Sciaenops ocellatus), red snapper (Lutjanus campechanus), and cobia (Rachycentron canadum). Aquaculture 253 (2006) 731-735
19. Rice W.R. Analyzing tables of statistical tests. Evolution 43 (1989) 223-225
20. Rozen S., and Skaletsky H.J. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S., and Misener S. (Eds). Bioinformatics Methods and Protocols: Methods in Molecular Biology (2000), Humana Press, Totowa, NJ 365-386
21. Supungul P., Sootanan P., Klinbunga S., Kamonrat W., Jarayabhand P., and Tassanakajon A. Microsatellite polymorphism and the population structure of the black tiger shrimp (Penaeus monodon) in Thailand. Mar. Biotechnol. 2 (2000) 339-347
22. Taris N., Baron S., Sharbel T., Sauvage C., and Boudry P. A combined microsatellite multiplexing and boiling DNA extraction method for high-throughput parentage analyses in the Pacific oyster (Crassostrea gigas). Aquac. Res. 36 (2005) 516-518
23. Tassanakajon A., Tiptawonnukul A., Supungul P., Rimphanitchayakit V., Cook D., Jarayabhand P., Klinbunga S., and Boonsaeng V. Isolation and characterization of microsatellite markers in the black tiger prawn Penaeus monodon. Mol. Mar. Biol. Biotechnol. 7 (1998) 55-61
24. Vandeputte M., Dupont-Nivet M., Chatain B., and Chevassus B. Setting up a strain-testing design for the seabass, Dicentrarchus labrax: a simulation study. Aquaculture 202 (2001) 329-342
25. Weir B.S., and Cockerham C.C. Estimating F-statistics for the analysis of population structure. Evolution 38 (1984) 1358-1370
26. Wuthisuthimethavee S., Lumubol P., Vanavichit A., and Tragoonrung S. Development of microsatellite markers in black tiger shrimp (Penaeus monodon fabricius). Aquaculture 224 (2003) 39-50
27. Xu Z., Dhar A.K., Wyrzykowski J., and Alcivar-Warren A. Identification of abundant and informative microsatellites from shrimp (Penaeus monodon). Anim. Genet. 30 (1999) 150-156