Characterization and fAFLP genotyping of Penicillium strains from postharvest samples and packinghouse environments

Journal of Plant Pathology

Volumn 89, Issue 1, 2007, Pages 29-40

  Oliveri, C ^a   Campisano, A ^b   Catara, A ^a,b   Cirvilleri, G ^a  

^a UNIVERSITY OF CATANIA   (Italy)

^b Parco Scientifico e Tecnologico della Sicilia SCpA   (Italy)

Author keywords

Characterization; DNA fingerprinting; fAFLP; Penicillium; Postharvest

Indexed keywords

CITRUS LIMON; CITRUS X PARADISI; ERIOBOTRYA JAPONICA; FRAGARIA X ANANASSA; OPUNTIA; PENICILLIUM; PENICILLIUM CHRYSOGENUM; PENICILLIUM CITRINUM; PENICILLIUM DIGITATUM; PENICILLIUM EXPANSUM; PENICILLIUM ITALICUM; PENICILLIUM OLSONII; PYRUS;

EID: 34247264851     PISSN: 11254653     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (44)

1. Abd-Elsalam K.A., Schnieder F., Khalil M.S., Asran-Amal A., Verrete A., 2003. Use of AFLP fingerprinting to analyze genetic variation within and between populations of Fusarium spp. derived from Egyptian cotton cultivars. Journal of Plant Pathology 85: 99-103.
2. Arnold C., Metherell L., Clewley J.P., Stanley J., 1999. Predictive modeling of fluorescent AFLP: a new approach to the molecular epidemiology of E. coli. Research in Microbiology 150: 33-44.
3. Bakkeren G., Kronstad J.W., Levesque A.C., 2000. Comparison of AFLP fingerprints and ITS sequences as phylogenetic markers in Ustilaginomycetes. Mycologia 92: 510-521.
4. Boysen M.E., Jacobsson K.G, Schnürer J., 2000. Molecular identification of species from the Penicillium roqueforti group associated with spoiled animal feed. Applied and Environmental Microbiology 66: 1523-1526.
5. Bridge P.D., Arora D.K., 1998. Interpretation of PCR methods for species definition. In: Bridge P.D., Arora D.K., Reddy C.A., and Elander R.P. (eds). Application of PCR in Mycology, pp. 62-84. CAB International, N.Y., USA.
6. Carmichael J.W, 1955. Lacto-fuchsin: a new medium for mounting fungi. Mycologia 47: 611.
7. De Curtis F., Caputo L., Castoria R., Lima G., Stea G., De Cicco V., 2004. Use of fluorescent amplified fragment length polymorphism (fAFLP) to identify specific molecular markers for the biocontrol agent Aureobasidium pullulans strain LS30. Postharuest Biology and Biotechnology 34: 179-186.
8. Diaz S., Pire C., Ferrer J., Bonete M.J., 2003. Identification of Phoenix dactylifera L. varieties based on amplified fragment length polymorphism. Cellular and Molecular Biology Letters 8: 891-899.
9. Dresler-Nurmi A., Terefework Z., Kaijalainen S., Lindstro M.K., Hatakka A., 2000. Silver stained polyacrylamide gels and fluorescence-based automated capillary electrophoresis for detection of amplified fragment polymorphism patterns obtained from white-rot fungi in the genus Trametes. Journal of Microbiological Methods 41: 161-172.
10. Dupont J., Magnin S., Marti A., Brousse M., 1999. Molecular tools for identification of Penicillium starter cultures used in food industry. International journal of Food Microbiology 49:109-118.
11. Felsenstein J., 2004. PHYLIP (Phylogeny Inference Package) version 3.6. Department of Genome Sciences, University of Washington, Seattle, USA.
12. Frisvad J.C., 1981. Physiological criteria and mycotoxin production as aids in identification of common asymmetric penicillia. Applied of Environmental Microbiology 41: 568-579.
13. Frisvad J.C., Filtenborg O., 1983. Classification of terverticillate Penicillia based on profiles of mycotoxins and other secondary metabolites. Applied and Environmental Microbiology 46: 1301-1310.
14. Frisvad J.C., Lund F., Elmholt S., 2005. Ochratoxin A producing Penicillium verrucosum isolates from cereals reveal large AFLP fingerprinting variability. Journal and Applied Microbiology 98: 684-692.
15. Geisen R., Cantor M.D., Hansen T.K., Holzapfel W.H., Jakobsen M., 2001. Characterization of Penicillium roqueforti strains used as cheese starter cultures by RAPD typing. International Journal of food Microbiology 65:183-191.
16. Huang J., Sun M., 1999. A modified AFLP with fluorescencelabelled primers and automated DNA. biotechnology Techniques 13: 277-278.
17. Kure CF., Skaar I., Holst-Jensen A., Abeln E.C.A., 2003. The use of AFLP to relate cheese-contaminating Penicillium strains to specific points in the production plants. International Journal of Food Microbiology 83: 195-204.
18. Lin J.J., Kuo J., Ma J., 1996. A PCR-based DNA fingerprinting technique AFLP for molecular typing of bacteria. Nucleic Acids Research 24: 3649-3650.
19. Lund F., Nielsen A.B., Skouboe P., 2003. Distribution of Penicillium commune isolates in cheese dairies mapped using secondary metabolite profiles, morphotypes, RAPD and AFLP fingerprinting, food Microbiology 20: 725-734.
20. Majer D., Mithen R., Lewis B.C., Vos P., Oliver R.P., 1996. The use of AFLP fingerprinting for the detection of genetic variation in fungi. Mycological Research 100: 1107-1111.
21. Marek P., Annamalai T., Venkitanarayanan K., 2003. Detection of Penicillium expansum by polymerase chain reaction. International Journal of Food Microbiology 89: 139-144.
22. Mueller U.C., Wolfenbarger L., 1999. AFLP genotyping and fingerprinting. Tree 14: 389-394.
23. Nei M., 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590.
24. Olive D.M., Bean P., 1999. Principles and applications of methods for DNA-based typing of microbial organisms. Journal of Clinical Microbiology 37: 1661-1669.
25. Oliveri C., Campisano A., Cirvilleri G., Catara A., 2004. Fingerprinting analysis of pathogenic and non pathogenic postharvest Penicillium strains. Journal of Plant Pathology 86: 300.
26. Pedersen L.H., Skouboe P., Boysen M., Soule J., Rossen L., 1997. Detection of Penicillium in complex food samples using the polymerase chain reaction. International Journal of food Microbiology 35:169-177.
27. Peterson S.W., 2000. Phylogenetic analysis of Penicillium species based on ITS and LSU-rDNA nucleotide sequences. In: Integration of Modern Taxonomic Methods for Penicillium and Aspergillus classification. Samson R.A. and Pitt J.I. pp. 163-178. Harwood Academic Publishers, U.K.
28. Pianzzola M. J., Moscatelli M., Vero S., 2004. Characterization of Penicillium isolates associated with blue mold on apple in Uruguay. Plant Disease 88: 23-28.
29. Pitt J.I., 2000. A laboratory guide to common Penicillium species. CSIRO Division of Food Processing, North Ryde, New South Wales, Australia.
30. Pitt J.I., Hocking, A.D., 1997. Fungi and food spoilage. 2nd Ed. Blackie Academic and Professional, London, UK.
31. Ripabelli G., McLauchlin J., Mithani V., Threfall E.J., 2000. Epidemiological typing of Bacillus cereus by amplified fragmentlength polymorphism. Letters in Applied Microbiology 30: 358-363.
32. Rosendhal S., Taylor J.W., 1997. Development of multiple genetic markers for studies of genetic variation in arbuscular mycorrhizal fungi using AFLP. Molecular Ecology 6: 821-829.
33. Savelkoul P.H.M., Aarts H.J.M., Haas J., Dijkshoorn L., Duim B., Otsen M., Rademaker J.L.W., Schouls L., Lenstra J.A., 1999. Amplified fragment length polymorphism analysis: the state of art. Journal of Clinical Microbiology 37: 3083-3091.
34. Schmidt H., Ehmann M., Vogel R.R., Aniwaki M.H., Niessen I., 2003. Molecular typing of Aspergillus ochraceus and construction of species specific SCAR primers based on AFLP. Systematic and Applied Microbiology 26: 138-146.
35. Scott J., Untereiner W.A., Wong B., Straus A., Malloch D., 2004. Genotypic variation in Penicillium chrysogenum from indoor environments. Mycologia 96: 1095-1105.
36. Scuderi G., Bonaccorsi A., Scortichini M., Cirvilleri G., 2005. Preliminary assessment of Pseudomonas syringae isolates using fluorescent amplified fragment length polymorphism. Journal of Plant Pathology 87: 283.
37. Skouboe P., Frisvad J.C., Taylor J.W., Lauritsen D., Boysen M., Rossen L., 1999. Phylogenetic analysis of nucleotide sequences from the ITS region of terverticillate Penicillium species. Mycogical Research 103: 873-881.
38. Sneath P.H.A., Sokal R.R., 1973. Numerical Taxonomy. Freeman W.H. (ed.), San Francisco, USA.
39. Terefework Z., Kaijalainen S., Lindstro M.K., 2001. AFLP fingerprinting as a tool to study the genetic diversity of Rhizobium galegae isolated from Galega orientalis and Galega officinalis. Journal of Biotechnology 91: 169-180.
40. Tuthill D.E., 2004. Genetic variation and recombination in Penicillium miczynskii and Eupenicillium species. Mycological Research 103: 1593-1603.
41. Vos P., Hogers R., Bleeker M., Reijans M., Vander Lee T., Miranda H., Frijters A., Pot J., Peleman J., Kuiper M., Zabeau M., 1995. AFLP: a new tecnique for DNA fingerprinting. Nucleic Acids Research 23: 4407-4414.
42. Wenz H.M., Robertson J.M., Menchen S., Oaks F., Demorest D.M., Scheibler D., Rosenblum B.B., Wike C., Gilbert D.A., Efcavith J.W., 1998. High-precision genotyping by denaturing capillary electrophoresis. Genomic Research 8: 69-80.
43. White T.J., Bruns T., Lee S., Taylor J.W., 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sninsky J.J. and White T.J. (eds.). PCR Protocols: A Guide to Methods and Applications, pp. 315-322. Academic Press, London, U.K.
44. Zewdu T., Seppo K., Kristina L., 2001. AFLP fingerprinting as a tool to study the genetic diversity of Rhizobium galegae isolated from Galega orientalis and Galega officinalis. Journal of Biotechnology 91: 169-180.