Magnetic resonance microscopy of biofouling induced scale dependent transport in porous media

Advances in Water Resources

Volumn 30, Issue 6-7, 2007, Pages 1408-1420

  Seymour, Joseph D ^a,b   Gage, Justin P ^a,b   Codd, Sarah L ^a,b   Gerlach, Robin ^b  

^a Idaho National Laboratory   (United States)

^b MONTANA STATE UNIVERSITY   (United States)

Author keywords

Anomalous transport; Biofilms; Biofouling; MRI; NMR; Porous media

Indexed keywords

BIOFILMS; BIOMASS; DISPERSIONS; MAGNETIC RESONANCE IMAGING; NUCLEAR MAGNETIC RESONANCE; POROUS MATERIALS;

ANOMALOUS TRANSPORT; DISPERSION DYNAMICS; MAGNETIC RESONANCE MICROSCOPY (MRM);

BIOFOULING;

BIOFILMS; BIOFOULING; BIOMASS; DISPERSIONS; MAGNETIC RESONANCE IMAGING; NUCLEAR MAGNETIC RESONANCE; POROUS MATERIALS;

BIOFILM; BIOFOULING; BIOMASS; DISPERSION; HYDRODYNAMICS; MICROSCOPY; POROUS MEDIUM; SPATIAL DISTRIBUTION;

EID: 34247170341     PISSN: 03091708     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.advwatres.2006.05.029     Document Type: Article

References (67)

1. Cunningham A.B., Characklis W.G., Abedeen F., and Crawford D. Influence of biofilm accumulation on porous media hydrodynamics. Environ Sci Technol 25 (1991) 1305-1311
2. Wanner O., Cunningham A.B., and Lundman R. Modeling biofilm accumulation and mass transport in a porous medium under high substrate loading. Biotechnol Bioeng 47 (1995) 703-712
3. van As H., and Lens P. Use of 1 H NMR to study transport processes in porous biosystems. J Ind Microbiol Biotechnol 26 (2001) 43-52
4. Potter K., Kleinberg R.L., Brockman F.J., and McFarland E.W. Assay for bacteria in porous media by diffusion-weighted NMR. J Magn Reson B 113 (1996) 9-15
5. Hoskins B.C., Fevang L., Majors P.D., Sharma M.M., and Georgiou G. Selective imaging of biofilms in porous media by NMR relaxation. J Magn Reson 139 (1999) 67-73
6. Seymour J.D., Gage J.P., Codd S.L., and Gerlach R. Anomolous fluid transport in porous media induced by biofilm growth. Phys Rev Lett 93 19 (2004) 198103
7. Brown S., Caprihan A., and Hardy R. Experimental observation of fluid flow channels in a single fracture. J Geophys Res - Solid Earth 103 B3 (1998) 5125-5132
8. Dijk P., Berkowitz B., and Bendel P. Investigation of flow in water-saturated rock fractures using nuclear magnetic resonance imaging (NMRI). Water Resour Res 35 2 (1999) 347-360
9. Dijk P., Berkowitz B., and Yechieli Y. Measurement and analysis of dissolution patterns in rock fractures. Water Resour Res 38 2 (2002) 1013
10. Seto K., Hollenshead J.T., Watson A.T., Chang C.T.P., and Slattery J.C. Determination of permeability distributions using NMR velocity imaging. Transp Porous Media 42 (2001) 351-388
11. Seymour J.D., and Callaghan P.T. Flow-diffraction structural characterization and measurement of hydrodynamic dispersion in porous media by PGSE NMR. J Magn Reson A 122 (1996) 90-93
12. Kutsovsky Y.E., Scriven L.E., Davis H.T., and Hammer B.E. NMR imaging of velocity profiles and velocity distributions in bead packs. Phys Fluids 8 4 (1996) 863-871
13. Ding A., and Candela D. Probing nonlocal tracer dispersion in flows through random porous media. Phys Rev E 54 (1996) 656-659
14. Lebon L., Oger L., Leblond J., Hulin J.P., Martys N.S., and Schwartz L.M. Pulsed gradient NMR measurements and numerical simulation of flow velocity distribution in sphere packings. Phys Fluids 8 2 (1996) 293-301
15. Seymour J.D., and Callaghan P.T. Generalized approach to NMR analysis of flow and dispersion in porous medium. AIChE J 43 (1997) 2096-2111
16. Stapf S., Packer K.J., Graham R.G., Thovert J.-F., and Adler P.M. Spatial correlations and dispersion for fluid transport through packed glass beads studied by pulsed field-gradient NMR. Phys Rev E 58 5 (1998) 6206-6221
17. Manz B., Alexander P., and Gladden L.F. Correlations between dispersion and structure in porous media probed by nuclear magnetic resonance. Phys Fluids 11 2 (1999) 259-267
18. Tallarek U., Vergeldt F.J., and van As H. Stagnant mobile phase mass transfer in chromatographic media: intraparticle diffusion and exchange kinetics. J Phys Chem B 103 (1999) 7654-7664
19. Berkowitz B., and Scher H. Anomalous transport in random fracture networks. Phys Rev Lett 79 20 (1997) 4038-4041
20. Benson D.A., Wheatcraft S.W., and Meerschaert M.M. Application of a fractional advection-dispersion equation. Water Resour Res 36 6 (2000) 1403-1412
21. Metzler R., and Klafter J. The random walk's guide to anomalous diffusion: a fractional dynamics approach. Phys Rep 339 (2000) 1-77
22. Scher H., Shlesinger M.F., and Bendler J.T. Time-scale invariance in transport and relaxation. Phys Today January (1991) 26-34
23. Compte A. Continuous time random walks on moving fluids. Phys Rev E 55 6 (1997) 6821-6831
24. Metzler R., and Compte A. Generalized diffusion-advection schemes and dispersive sedimentation: a fractional approach. J Phys Chem B 104 16 (2000) 3858-3865
25. Berkowitz B., Klafter J., Metzler R., and Scher H. Physical pictures of transport in heterogeneous media: advection-dispersion, random-walk and fractional derivative formulations. Water Resour Res 38 10 (2002) 1112-1191
26. Goldenfeld N., and Kadanoff L.P. Simple lessons from complexity. Science 284 (1999) 87-89
27. Kimmich R. Strange kinetics, porous media and NMR. Chem Phys 284 (2002) 253-285
28. Taylor G.I. Diffusion by continuous movements. Proc Lond Math Soc 20 ser. 2 (1921) 196-212
29. van Kampen N.G. Stochastic processes in physics and chemistry (1992), North-Holland, Amsterdam
30. Kubo R., Toda M., and Hashitsume N. Statistical physics II: nonequilibrium statistical mechanics (1991), Springer-Verlag, Berlin
31. Taylor G.I. Dispersion of soluble matter in solvent flowing slowly through a tube. Proc R Soc London, A 219 (1953) 186-203
32. Mazo R.M. Brownian motion: fluctuations, dynamics and applications (2002), Oxford, New York p. 289
33. Cushman J.H., Bennethum L.S., and Hu B.X. A primer on upscaling tools for porous media. Adv Water Resour 25 (2002) 1043-1067
34. Brenner H. Macrotransport processes: Brownian tracers as stochastic averagers in effective-medium theories of heterogeneous media. J Stat Phys 62 5/6 (1991) 1095-1119
35. Bhattacharya R.N., and Gupta V.K. On the Taylor-Aris theory of solute transport in a capillary. SIAM J Appl Math 44 1 (1984) 33-39
36. Koch D.L., and Brady J.F. A non-local description of advection-diffusion with application to dispersion in porous media. J Fluid Mech 180 (1987) 387-403
37. Cushman J.H., Hu B.X., and Ginn T.R. Nonequilibrium statistical mechanics of preasymptotic dispersion. J Stat Phys 75 (1994) 859-878
38. Bouchaud J.-P., and Georges A. Anomalous diffusion in disordered media: statistical mechanisms, models and applications. Phys Rep 195 4&5 (1990) 127-293
39. Shlesinger M.F., Zaslavsky G.M., and Klafter J. Strange kinetics. Nature 363 (1993) 31-37
40. Kenkre V.M., Montroll E.W., and Shlesinger M.F. Generalized master equations for continuous time random walks. J Stat Phys 9 1 (1973) 45-50
41. Sahimi M., Hughes B.D., Scriven L.E., and Davis H.T. Stochastic transport in disordered systems. J Chem Phys 78 11 (1983) 6849-6864
42. Dentz M., Cortis A., Scher H., and Berkowitz B. Time behaviour of solute transport in heterogeneous media: transition from anomalous to normal transport. Adv Water Resour 27 (2004) 155-173
43. Cushman J.H., and Ginn T.R. Fractional advection dispersion equation: a classical mass balance with convolution-Fickian flux. Water Resour Res 36 12 (2000) 3763-3766
44. Seymour J.D., Codd S.L., Gjersing E.L., and Stewart P.S. Magnetic resonance microscopy of biofilm structure and impact on transport in a capillary bioreactor. J Magn Reson 167 (2004) 322-327
45. Gjersing E.L., Codd S.L., Seymour J.D., and Stewart P.S. Magnetic resonance microscopy analysis of advective transport in a biofilm reactor. Biotechnol Bioeng 89 7 (2005) 822-834
46. van den Broeck C. A stochastic description of longitudinal dispersion in uniaxial flows. Physica 112A (1982) 343-352
47. Codd S.L., Manz B., Seymour J.D., and Callaghan P.T. Taylor dispersion and molecular displacements in Poiseuille flow. Phys Rev E 60 4 (1999) R3491-R3494
48. Callaghan P.T., Codd S.L., and Seymour J.D. Spatial coherence phenomena arising from translational spin motion in gradient spin echo experiments. Concepts Magn Reson 11 (1999) 181-202
49. Callaghan P.T. Principles of nuclear magnetic resonance microscopy (1991), Oxford University Press, New York
50. 2 imaging of plant tissues by means of multi-echo MRI microscopy. Magn Reson Imaging 16 2 (1998) 185-196
51. Li T.-Q., Seymour J.D., Powell R.L., McCarthy K.L., Odberg L., and McCarthy M.J. Turbulent flow studied by time averaged NMR imaging: measurements of velocity profile and turbulent intensity. Magn Reson Imaging 12 6 (1994) 923-934
52. Stejskal E.O., and Tanner J.E. Spin diffusion measurements: spin echoes in the presence of a time-dependent field gradient. J Chem Phys 42 (1965) 288
53. Boon J.P., and Yip S. Molecular hydrodynamics (1991), Dover Publications, New York
54. Callaghan P.T., Coy A., MacGowan D., Packer K.J., and Zelaya F.O. Diffraction-like effects in NMR diffusion studies of fluids in porous solids. Nature 351 (1991) 467-469
55. Maier R.S., Kroll D.M., Bernard R.S., Howington S.E., Peters J.F., and Davis H.T. Pore-scale simulation of dispersion. Phys Fluids 12 (2000) 2065-2079
56. Kandhai D., Hlushkou D., Hoekstra A.G., Sloot P.M.A., van As H., and Tallarek U. Influence of stagnant zones on transient and asymptotic dispersion in macroscopically homogeneous porous media. Phys Rev Lett 88 23 (2002)
57. Stapf S., Han S.-I., Heine C., and Blümich B. Spatiotemporal correlations in transport processes determined by multiple pulsed field gradient experiments. Concepts Magn Reson 14 3 (2002) 172-211
58. Callaghan P.T., and Manz B. Velocity exchange spectroscopy. J Magn Reson Ser A 106 (1994) 260-265
59. Callaghan P.T., and Codd S.L. Flow coherence in a bead pack observed using frequency domain modulated gradient NMR. Phys Fluids 13 (2001) 412-427
60. Callaghan P.T., and Stepisnik J. Generalized analysis of motion using magnetic field gradients. Adv Mag Opt Res 19 (1996) 325-388
61. Caprihan A., and Seymour J.D. Correlation time and diffusion coefficient imaging: application to a granular flow system. J Magn Reson 144 (2000) 96-107
62. Song Y.Q., and Tang X.P. A one-shot method for measurement of diffusion. J Magn Reson 170 1 (2004) 136-148
63. Song Y.Q., and Scheven U.M. An NMR technique for rapid measurement of flow. J Magn Reson 172 1 (2005) 31-35
64. Hurlimann M.D., Venkataramanan L., and Flaum C. The diffusion-spin relaxation time distribution function as an experimental probe to characterize fluid mixtures in porous media. J Chem Phys 117 22 (2002) 10223-10232
65. Callaghan P.T., Godefroy S., and Ryland B.N. Diffusion-relaxation correlation in simple pore structures. J Magn Reson 162 2 (2003) 320-327
66. van der Weerd L., Melnikov S.M., Vergeldt F.J., Novikov E.G., and van As H. Modelling of self-diffusion and relaxation time NMR in multicompartment systems with cylindrical geometry. J Magn Reson 156 2 (2002) 213-221
67. Walters III M.C., Roe F., Bugnicourt A., Franklin M.J., and Stewart P.S. Contributions of antibiotic penetration, oxygen limitation, and low metabolic activity to tolerance of pseudomonas aeruginosa biofilms to ciprofloxacin and Tobramycin. Antimicrob Agents Chemother 47 1 (2003) 317-323