Unobtrusive integration of data management with fMRI analysis

Neuroinformatics

Volumn 5, Issue 1, 2007, Pages 3-10

  Poliakov, Andrew V ^a   Hertzenberg, Xenia ^a   Moore, Eider B ^a   Corina, David P ^b   Ojemann, George A ^c   Brinkley, James F ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

Author keywords

Analysis automation; Data management; fMRI; Neuroimaging; Ontology; SPM

Indexed keywords

ANALYTICAL PARAMETERS; ARTICLE; AUTOMATION; DATA ANALYSIS; DATA ANALYSIS SOFTWARE; DEMOGRAPHY; FUNCTIONAL MAGNETIC RESONANCE IMAGING; MEDICAL INFORMATICS; NEUROIMAGING; PRIORITY JOURNAL;

ANIMALS; BRAIN MAPPING; DATABASE MANAGEMENT SYSTEMS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; SOFTWARE;

EID: 34247136678     PISSN: 15392791     EISSN: None     Source Type: Journal    
DOI: 10.1385/NI:5:1:3     Document Type: Article

References (20)

1. Bales, N., Brinkley, J. F., et al. (2005) A Framework for XML-based Integration of Data, Visualization and Analysis in a Biomedical Domain. Proceedings, XSym 2005, pp. 207-221, Trondheim, Norway.
2. Bly, B. M., Rebbechi, D., Hanson, S. J., Grasso, G. (2004) The RUMBA software: tools for neuroimaging data analysis. Neuroinformatics 2(1), 71-100.
3. Brinkley, J. F. and Rosse, C. (2002) Imaging Informatics and the Human Brain Project: the Role of Structure, Review Yearbook of Medical Informatics, 111-128.
4. Corina D. P., Gibson E. K., Martin R., Poliakov A. V., Brinkley J. F., Ojemann G. A. (2005) Dissociation of action and object naming: evidence from cortical stimulation mapping. Hum. Brain Mapp. 24(1), 1-10.
5. Dickson, J., Drury, H., and Van Essen, D.C. (2001) The surface management system (SuMS) database: A surface-based database to aid cortical surface reconstruction, visualization and analysis. Phil. Trans. Royal Soc. Ser. B. 356, 1277-1292.
6. Fissell, K., Tseytlin, E., Cunningham, D., Carter, C. S., Schneider, W., and Cohen J. D. (2003) Fiswidgets: A graphical computing environment for neuroimaging analysis. Neuroinformatics 1, 111-125.
7. Frackowiak, R. S. J., Friston, K. J., Frith, C. D., Dolan, R. J., and Mazziotta, J.C. (eds.) (1997) Human Brain Function. Academic Press, USA.
8. Gennari, J. H., Musen, M. A., Fergerson, R. W., et al. (2003) The evolution of Protégé: an environment for knowledge-based systems development. Int. J. Hum. Comput. Stud. 58(1), 89-123.
9. Grethe, J. S., Baru, C., Gupta, A., et al. (2005) Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease. Stud. Health Technol. Inf. 112, 100-109.
10. Hinshaw, K. P., Poliakov, A. V., Martin, R. F., Moore, E. B., Shapiro, L. G., and Brinkley, J. F. (2002) Shape-based cortical surface segmentation for visualization brain mapping. NeuroImage 16, 295-316.
11. Jakobovits, R. M., Modayur, B, Brinkley, J. F. (1996) A Web-based repository manager for brain mapping data. Proc. AMIA Annu. Fall Symp. pp. 309-313.
12. Koslow, S. H. (2002) Opinion: Sharing primary data: a threat or asset to discovery? Nat. Rev. Neurosci. 4, 311-313.
13. Moore, E. B., Poliakov, A. V., and Brinkley, J. F. (2004) Brain Visualization in Java3D. Proceedings, MedInfo 2004 San Francisco, CA, p. 1761.
14. Poliakov, A. V., Hinshaw, K. P., Rosse, C., and Brinkley, J. F. (1999) Integration and Visualization of Multimodality Brain Data for Language Mapping, Proceedings AMIA Annu. Fall Symp pp. 349-353.
15. Rex, D. E., Ma, J. Q., and Toga, A. W. (2003) The LONI Pipeline Processing Environment. NeuroImage 19, 1033-1048.
16. Toga A. W. (2002a) Imaging Databases and Neuroscience. Neuroscientist 8, 423-436.
17. Toga, A. W. (2002b) Neuroimage databases: the good, the bad and the ugly. Nat. Rev. Neurosci. 4, 302-309.
18. Van Essen, D. C. and Drury, H. A. (1997) Structural and functional analyses of human cerebral cortex using a surface-based atlas. J. Neurosci. 17, 7079-7102.
19. Van Horn, J. D., Grethe, J. S., Kostelec P., et al. (2001) The Functional Magnetic Resonance Imaging Data Center (fMRIDC): the challenges and rewards of large-scale databasing of neuroimaging studies. Philos. Trans. R Soc. Lond. B Biol. Sci. 356(1412), 1323-1339.
20. Wong, B. A. and Brinkley, J. F. (1998) Dynamic 3-D scene navigation in web-based anatomy atlases, Proceedings AMIAAnnu. Fall Symp. pp. 1100-1104.