Functional roles of the heme architecture and its environment in tetraheme cytochrome c

Accounts of Chemical Research

Volumn 40, Issue 3, 2007, Pages 171-178

  Akutsu, Hideo ^a   Takayama, Yuki ^a  

^a OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME C; CYTOCHROME C(3); HEME; UNCLASSIFIED DRUG;

ARTICLE; BIOSYNTHESIS; CHEMISTRY; CONFORMATION; ELECTRON TRANSPORT; ESCHERICHIA COLI; GENETICS; OXIDATION REDUCTION REACTION; PHYSIOLOGY; PLASMID; PROTEIN CONFORMATION; SHEWANELLA;

CYTOCHROME C GROUP; CYTOCHROMES C; ELECTRON TRANSPORT; ESCHERICHIA COLI; HEME; MOLECULAR CONFORMATION; OXIDATION-REDUCTION; PLASMIDS; PROTEIN CONFORMATION; SHEWANELLA;

EID: 34147202844     PISSN: 00014842     EISSN: None     Source Type: Journal    
DOI: 10.1021/ar030262g     Document Type: Article

References (39)

1. Odom, J. M., Singleton, R., Jr., Eds. The Sulfate-Reducing Bacteria: Contemporary Perspectives; Springer-Verlag: New York, 1993.
2. 3 from D. vulgaris Miyazaki F on the basis of its reduced solution structure. J. Mol. Biol. 2002, 319, 767-778.
3. 3 from D. vulgaris Miyazaki F. Biochim. Biophys. Acta 1996, 1293, 45-54.
4. 3. J. Biol. Inorg. Chem. 2007, 12, 1-10.
5. Myers, C. R.; Myers, J. M. Outer membrane cytochromes of Shewanella putrefaciens MR-1: spectral analysis, and purification of the 83-kDa c-type cytochrome. Biochim. Biophys. Acta 1997, 1326, 307-318.
6. 554 from Nitrosomonas europaea. Nat. Struct. Biol. 1998, 5, 1005-1012.
7. Leys, D.; Meyer, T. E.; Tsapin, A. S.; Nealson, K. H.; Cusanovich, M. A.; Van Beeumen, J. J. Crystal structures at atomic resolution reveal the novel concept of "electron-harvesting" as a role for the small tetraheme cytochrome c. J. Biol. Chem. 2002, 277, 35703-35711.
8. Deisenhofer, J.; Epp, O.; Sinning, I.; Michel, H. Crystallographic refinement at 2.3 Å resolution and refined model of the photosynthetic reaction centre from Rhodopseudomonas viridis. J. Mol. Biol. 1995, 246, 429-457.
9. 3 from Desulfovibrio vulgaris Hildenborough in Escherichia coli: export and processing of the apoprotein. J. Gen. Microbiol. 1989, 135, 2319-2328.
10. 3 in Desulfovibrio desulfuricans G200 after conjugational gene transfer from Escherichia coli. J. Bacteriol. 1990, 172, 6122-6126.
11. Ozawa, K.; Yasukawa, F.; Fujiwara, Y.; Akutsu, H. A simple, rapid, and highly efficient gene expression system for multiheme cytochrome c. Biosci. Biotechnol. Biochem. 2001, 65, 185-189.
12. 3 oxidase in Escherichia coli. Biochem. Biophys. Res. Commun. 1998, 251, 744-747.
13. Gunner, M. R.; Honig, B. Electrostatic control of midpoint potentials in the cytochrome subunit of the Rhodopseudomonas viridis reaction center. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 9151-9155.
14. 3 after heme axial ligand replacements. J. Biol. Chem. 1994, 269, 6340-6346.
15. 3 at 1.8 Å resolution. J. Mol. Biol. 1984, 172, 109-139.
16. Harada, E.; Kumagai, J.; Ozawa, K.; Imabayashi, S.; Tsapin, A. S.; Nealson, K. H.; Meyer, T. E.; Cusanovich, M. A.; Akutsu, H. A directional electron transfer regulator based on heme-chain architecture in the small tetraheme cytochrome c from Shewanella oneidensis. FEBS Lett. 2002, 532, 333-337.
17. 3, studied by single crystal EPR. Bull. Chem. Soc. Jpn. 2004, 77, 357-363.
18. 3 from Desulfovibrio vulgaris Miyazaki F. Biophys. J. 2003, 85, 3367-3374.
19. 3 from Desulfovibrio vulgaris Miyazaki F. Biochemistry 2004, 43, 10859-10866.
20. 3. J. Biol. Inorg. Chem. 1996, 1, 542-550.
21. 3: Structure, stability, and function studies. Biochemistry 1999, 38, 33-41.
22. 3 probed by site-specific mutagenesis. Biochemistry 2001, 40, 9709-9716.
23. 3 with [NiFe] hydrogenase from Desulfovibrio vulgaris Miyazaki F. Biochemistry 2006, 45, 1653-1662.
24. Higuchi, Y.; Yagi, T; Yasuoka, N. Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis. Structure 1997, 5, 1671-1680.
25. 3-[Fe]-hydrogenase electron-transfer complex: structural model by NMR restrained docking. FEBS Lett. 2003, 548, 1-4.
26. Chen, R.; Weng, Z. A novel shape complementarity scoring function for protein-protein docking. Proteins 2003, 51, 397-408.
27. 3. Biochemistry 2006, 45, 3163-3169.
28. 7 from Desulfuromonas acetoxidans at 1.9 Å resolution. Acta Crystallogr. 2001, D57, 670-678.
29. Lupton, F. S.; Conrad, R.; Zeikus, J. G. Physiological function of hydrogen metabolism during growth of sulfidogenic bacteria on organic substrates. FEMS Microbiol. Lett. 1984, 23, 263-268.
30. Voordouw, G. Carbon monoxide cycling by Desulfovibrio vulgaris Hildenborough. J. Bacteriol. 2002, 184, 5903-5911.
31. Tsapin, A. I.; Vandenberghe, I.; Nealson, K. H.; Scott, J. H.; Meyer, T. E.; Cusanovich, M. A.; Harada, E.; Kaizu, T.; Akutsu, H.; Leys, D.; Van Beeumen, J. J. Identification of a small tetraheme cytochrome c and a flavocytochrome c as two of the principal soluble cytochromes c in Shewanella oneidensis strain MR1. Appl. Environ. Microbiol. 2001, 67, 3236-3244.
32. Leys, D.; Tsapin, A. I.; Nealson, K. H.; Meyer, T. E.; Cusanovich, M. A.; Van Beeumen, J. J. Structure and mechanism of the flavocytochrome c fumarate reductase of Shewanella putrefaciens MR-1. Nat. Struct. Biol. 1999, 6, 1113-1117.
33. Alric, J.; Lavergne, J.; Rappaport, F.; Verméglio, A.; Matsuura, K.; Shimada, K.; Nagashima, K. V. P. Kinetic performance and energy profile in a roller coaster electron transfer chain: A study of modified tetraheme-reaction center constructs. J. Am. Chem. Soc. 2006, 128, 4136-4145.
34. Nogi, T.; Hirano, Y.; Miki, K. Structural and functional studies on the tetraheme cytochrome subunit and its electron donor proteins: the possible docking mechanisms during electron transfer reaction. Photosynth. Res. 2005, 85, 87-99.
35. 3 from Desulfovibrio vulgaris. Biochim. Biophys. Acta 1994, 1187, 232-235.
36. Morais, J.; Palma, N.; Frazão, C.; Caldeira, J.; LeGall, J.; Moura, I.; Moura, J. J. G.; Carrondo, M. A. Structure of the tetraheme cytochrome from Desulfovibrio desulfuricans ATCC 27774: X-ray diffraction and electron paramagnetic resonance studies. Biochemistry 1995, 34, 12830-12841.
37. 1H-nuclear-magnetic-resonance spectroscopy. Biochem. J. 1993, 294, 909-915.
38. 3 with different specificity. Biochim. Biophys. Acta 1996, 1273, 51-61.
39. 3 from Shewanella frigidimarina NCIMB400. Biochemistry 1999, 38, 3302-3309.