메뉴 건너뛰기




Volumn 40, Issue 5, 2007, Pages 1378-1388

An application of bioinformatics and text mining to the discovery of novel genes related to bone biology

Author keywords

Bisphosphonate; Bone apoptosis; Osteocyte; Osteoporosis; Text mining

Indexed keywords

BISPHOSPHONIC ACID DERIVATIVE; CYTOKINE; PROTEIN KINASE FYN; PROTEIN S 100; PROTEIN S100A12; SMAD PROTEIN; UNCLASSIFIED DRUG;

EID: 34047269282     PISSN: 87563282     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bone.2006.12.067     Document Type: Article
Times cited : (22)

References (27)
  • 1
    • 25444479977 scopus 로고    scopus 로고
    • CGMIM: automated text-mining of Online Mendelian Inheritance in Man (OMIM) to identify genetically-associated cancers and candidate genes
    • Bajdik C.D., Kuo B., Rusaw S., Jones S., and Brooks-Wilson A. CGMIM: automated text-mining of Online Mendelian Inheritance in Man (OMIM) to identify genetically-associated cancers and candidate genes. BMC Bioinformatics 6 (2005) 78
    • (2005) BMC Bioinformatics , vol.6 , pp. 78
    • Bajdik, C.D.1    Kuo, B.2    Rusaw, S.3    Jones, S.4    Brooks-Wilson, A.5
  • 2
    • 0025265976 scopus 로고
    • Medical literature as a potential source of new knowledge
    • Swanson D.R. Medical literature as a potential source of new knowledge. Bull. Med. Libr. Assoc. 78 (1990) 29-37
    • (1990) Bull. Med. Libr. Assoc. , vol.78 , pp. 29-37
    • Swanson, D.R.1
  • 3
    • 12344291865 scopus 로고    scopus 로고
    • Bone morphogenetic proteins
    • Chen D., Zhao M., and Mundy G.R. Bone morphogenetic proteins. Growth Factors 22 (2004) 233-241
    • (2004) Growth Factors , vol.22 , pp. 233-241
    • Chen, D.1    Zhao, M.2    Mundy, G.R.3
  • 4
    • 25444525410 scopus 로고    scopus 로고
    • Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts
    • Cohen A.M., Hersh W.R., Dubay C., and Spackman K. Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts. BMC Bioinformatics 6 (2005) 103
    • (2005) BMC Bioinformatics , vol.6 , pp. 103
    • Cohen, A.M.1    Hersh, W.R.2    Dubay, C.3    Spackman, K.4
  • 5
    • 10244245424 scopus 로고    scopus 로고
    • BioRAT: extracting biological information from full-length papers
    • Corney D.P., Buxton B.F., Langdon W.B., and Jones D.T. BioRAT: extracting biological information from full-length papers. Bioinformatics 20 (2004) 3206-3213
    • (2004) Bioinformatics , vol.20 , pp. 3206-3213
    • Corney, D.P.1    Buxton, B.F.2    Langdon, W.B.3    Jones, D.T.4
  • 7
    • 23144449917 scopus 로고    scopus 로고
    • LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts
    • Maier H., Dohr S., Grote K., O'Keeffe S., Werner T., Hrabe de Angelis M., et al. LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts. Nucleic Acids Res. 33 (2005) W779-W782
    • (2005) Nucleic Acids Res. , vol.33
    • Maier, H.1    Dohr, S.2    Grote, K.3    O'Keeffe, S.4    Werner, T.5    Hrabe de Angelis, M.6
  • 8
    • 10844244599 scopus 로고    scopus 로고
    • TransMiner: mining transitive associations among biological objects from text
    • Narayanasamy V., Mukhopadhyay S., Palakal M., and Potter D.A. TransMiner: mining transitive associations among biological objects from text. J. Biomed. Sci. 11 (2004) 864-873
    • (2004) J. Biomed. Sci. , vol.11 , pp. 864-873
    • Narayanasamy, V.1    Mukhopadhyay, S.2    Palakal, M.3    Potter, D.A.4
  • 9
    • 0033655017 scopus 로고    scopus 로고
    • Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts
    • Stapley B.J., and Benoit G. Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts. Pac. Symp. Biocomput. (2000) 529-540
    • (2000) Pac. Symp. Biocomput. , pp. 529-540
    • Stapley, B.J.1    Benoit, G.2
  • 10
    • 4544368855 scopus 로고    scopus 로고
    • Automatic construction of gene relation networks using text mining and gene expression data
    • Karopka T., Scheel T., Bansemer S., and Glass A. Automatic construction of gene relation networks using text mining and gene expression data. Med. Inform. Internet. Med. 29 (2004) 169-183
    • (2004) Med. Inform. Internet. Med. , vol.29 , pp. 169-183
    • Karopka, T.1    Scheel, T.2    Bansemer, S.3    Glass, A.4
  • 11
    • 31144432293 scopus 로고    scopus 로고
    • Literature mining for the biologist: from information retrieval to biological discovery
    • Jensen L.J., Saric J., and Bork P. Literature mining for the biologist: from information retrieval to biological discovery. Nat. Rev., Genet. 7 (2006) 119-129
    • (2006) Nat. Rev., Genet. , vol.7 , pp. 119-129
    • Jensen, L.J.1    Saric, J.2    Bork, P.3
  • 12
    • 33746277560 scopus 로고    scopus 로고
    • Genetics of osteoporosis
    • Huang Q.Y., and Kung A.W. Genetics of osteoporosis. Mol. Genet. Metab. 88 4 (2006) 295-306
    • (2006) Mol. Genet. Metab. , vol.88 , Issue.4 , pp. 295-306
    • Huang, Q.Y.1    Kung, A.W.2
  • 13
    • 33745686075 scopus 로고    scopus 로고
    • Gene polymorphisms involved in the regulation of bone quality
    • Thijssen J.H. Gene polymorphisms involved in the regulation of bone quality. Gynecol. Endocrinol. 22 (2006) 131-139
    • (2006) Gynecol. Endocrinol. , vol.22 , pp. 131-139
    • Thijssen, J.H.1
  • 15
    • 33846509981 scopus 로고    scopus 로고
    • Smad3 is acetylated by p300/CBP to regulate its transactivation activity
    • Inoue Y., Itoh Y., Abe K., Okamoto T., Daitoku H., Fukamizu A., et al. Smad3 is acetylated by p300/CBP to regulate its transactivation activity. Oncogene 26 4 (2006) 500-508
    • (2006) Oncogene , vol.26 , Issue.4 , pp. 500-508
    • Inoue, Y.1    Itoh, Y.2    Abe, K.3    Okamoto, T.4    Daitoku, H.5    Fukamizu, A.6
  • 16
    • 33748760321 scopus 로고    scopus 로고
    • TGF-beta activation of c-ABL is independent of receptor internalization and regulated by PI3K and PAK2 in mesenchymal cultures
    • Wilkes M.C., and Leof E.B. TGF-beta activation of c-ABL is independent of receptor internalization and regulated by PI3K and PAK2 in mesenchymal cultures. J. Biol. Chem. 281 38 (2006) 27846-27854
    • (2006) J. Biol. Chem. , vol.281 , Issue.38 , pp. 27846-27854
    • Wilkes, M.C.1    Leof, E.B.2
  • 17
    • 0037296799 scopus 로고    scopus 로고
    • The effects of alendronate and calcitonin on cytokines in postmenopausal osteoporosis: a 6-month randomized and controlled study
    • Gur A., Denli A., Cevik R., Nas K., Karakoc M., and Sarac A.J. The effects of alendronate and calcitonin on cytokines in postmenopausal osteoporosis: a 6-month randomized and controlled study. Yonsei Med. J. 44 (2003) 99-109
    • (2003) Yonsei Med. J. , vol.44 , pp. 99-109
    • Gur, A.1    Denli, A.2    Cevik, R.3    Nas, K.4    Karakoc, M.5    Sarac, A.J.6
  • 19
    • 0028944551 scopus 로고
    • New insights into the cellular, biochemical, and molecular basis of postmenopausal and senile osteoporosis: roles of IL-6 and gp130
    • Manolagas S.C., Bellido T., and Jilka R.L. New insights into the cellular, biochemical, and molecular basis of postmenopausal and senile osteoporosis: roles of IL-6 and gp130. Int. J. Immunopharmacol. 17 (1995) 109-116
    • (1995) Int. J. Immunopharmacol. , vol.17 , pp. 109-116
    • Manolagas, S.C.1    Bellido, T.2    Jilka, R.L.3
  • 20
    • 24644453609 scopus 로고    scopus 로고
    • Tumor necrosis factor alpha, CYP 17, urokinase, and interleukin 10 gene polymorphisms in postmenopausal women: correlation to bone mineral density and susceptibility to osteoporosis
    • Chen H.Y., Chen W.C., Hsu C.M., Tsai F.J., and Tsai C.H. Tumor necrosis factor alpha, CYP 17, urokinase, and interleukin 10 gene polymorphisms in postmenopausal women: correlation to bone mineral density and susceptibility to osteoporosis. Eur. J. Obstet. Gynecol. Reprod. Biol. 122 (2005) 73-78
    • (2005) Eur. J. Obstet. Gynecol. Reprod. Biol. , vol.122 , pp. 73-78
    • Chen, H.Y.1    Chen, W.C.2    Hsu, C.M.3    Tsai, F.J.4    Tsai, C.H.5
  • 21
    • 33744827154 scopus 로고    scopus 로고
    • Fyn kinase acts upstream of Shp2 and p38 mitogen-activated protein kinase to promote chemotaxis of mast cells towards stem cell factor
    • Samayawardhena L.A., Hu J., Stein P.L., and Craig A.W. Fyn kinase acts upstream of Shp2 and p38 mitogen-activated protein kinase to promote chemotaxis of mast cells towards stem cell factor. Cell. Signal. 18 (2006) 1447-1454
    • (2006) Cell. Signal. , vol.18 , pp. 1447-1454
    • Samayawardhena, L.A.1    Hu, J.2    Stein, P.L.3    Craig, A.W.4
  • 22
    • 33744913799 scopus 로고    scopus 로고
    • Regulation of microtubule formation in activated mast cells by complexes of gamma-tubulin with Fyn and Syk kinases
    • Sulimenko V., Draberova E., Sulimenko T., Macurek L., Richterova V., Draber P., et al. Regulation of microtubule formation in activated mast cells by complexes of gamma-tubulin with Fyn and Syk kinases. J. Immunol. 176 (2006) 7243-7253
    • (2006) J. Immunol. , vol.176 , pp. 7243-7253
    • Sulimenko, V.1    Draberova, E.2    Sulimenko, T.3    Macurek, L.4    Richterova, V.5    Draber, P.6
  • 23
    • 33744772918 scopus 로고    scopus 로고
    • Fibronectin rigidity response through Fyn and p130Cas recruitment to the leading edge
    • Kostic A., and Sheetz M.P. Fibronectin rigidity response through Fyn and p130Cas recruitment to the leading edge. Mol. Biol. Cell 17 (2006) 2684-2695
    • (2006) Mol. Biol. Cell , vol.17 , pp. 2684-2695
    • Kostic, A.1    Sheetz, M.P.2
  • 25
    • 33645880137 scopus 로고    scopus 로고
    • Regulation of osteoclast function and bone mass by RAGE
    • Zhou Z., Immel D., Xi C.X., Bierhaus A., Feng X., Mei L., et al. Regulation of osteoclast function and bone mass by RAGE. J. Exp. Med. 203 (2006) 1067-1080
    • (2006) J. Exp. Med. , vol.203 , pp. 1067-1080
    • Zhou, Z.1    Immel, D.2    Xi, C.X.3    Bierhaus, A.4    Feng, X.5    Mei, L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.