Monitoring the looping up of acyl chain labeled NBD lipids in membranes as a function of membrane phase state

Biochimica et Biophysica Acta - Biomembranes

Volumn 1768, Issue 5, 2007, Pages 1258-1267

  Raghuraman, H ^a   Shrivastava, Sandeep ^a   Chattopadhyay, Amitabha ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

DPPC; Gel phase; NBD lipids; NBD looping; Phase transition; REES

Indexed keywords

7 NITROBENZ 2 OXA 1,3 DIAZOL 4 YL; LIPID; UNCLASSIFIED DRUG;

ARTICLE; CELL FUNCTION; CELL MEMBRANE; CELL POLARITY; FLUORESCENCE; LIPID MEMBRANE; MONITORING; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN LOCALIZATION;

AZOLES; FLUORESCENCE; FLUORESCENCE POLARIZATION; GELS; LIPIDS; MEMBRANES, ARTIFICIAL; MODELS, BIOLOGICAL; MOLECULAR CONFORMATION; NITROBENZENES; PHASE TRANSITION; STAINING AND LABELING; TEMPERATURE;

EID: 34047267305     PISSN: 00052736     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbamem.2007.02.001     Document Type: Article

References (51)

1. In: Chattopadhyay A. (Ed). Lipid Probes in Membrane Biology. Chem. Phys. Lipids vol. 116 (2002) 1-188
2. Chattopadhyay A. Chemistry and biology of N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)-labeled lipids: fluorescent probes of biological and model membranes. Chem. Phys. Lipids 53 (1990) 1-15
3. Kobayashi T., and Pagano R.E. ATP-dependent fusion of liposomes with the Golgi apparatus of perforated cells. Cell 55 (1988) 797-805
4. Mukherjee S., and Chattopadhyay A. Membrane organization at low cholesterol concentrations: a study using 7-nitrobenz-2-oxa-1,3-diazol-4-yl-labeled cholesterol. Biochemistry 35 (1996) 1311-1322
5. Chattopadhyay A., and Mukherjee S. Red edge excitation shift of a deeply embedded membrane probe: implications in water penetration in the bilayer. J. Phys. Chem., B 103 (1999) 8180-8185
6. Rukmini R., Rawat S.S., Biswas S.C., and Chattopadhyay A. Cholesterol organization in membranes at low concentrations: effects of curvature stress and membrane thickness. Biophys. J. 81 (2001) 2122-2134
7. Wustner D., Mukherjee S., Maxfield F.R., Muller P., and Herrmann A. Vesicular and nonvesicular transport of phosphatidylcholine in polarized HepG2 cells. Traffic 2 (2001) 277-296
8. Huster D., Muller P., Arnold K., and Herrmann A. Dynamics of membrane penetration of the fluorescent 7-nitrobenz-2-oxa-1,3-diazol-4-yl (NBD) group attached to an acyl chain of phosphatidylcholine. Biophys. J. 80 (2001) 822-831
9. Mukherjee S., Raghuraman H., Dasgupta S., and Chattopadhyay A. Organization and dynamics of N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)-labeled lipids: a fluorescence approach. Chem. Phys. Lipids 127 (2004) 91-101
10. Elvington S.M., Bu F., and Nichols J.W. Fluorescent, acyl chain-labeled phosphatidylcholine analogs reveal novel transport pathways across the plasma membrane of yeast. J. Biol. Chem. 280 (2005) 40957-40964
11. Chattopadhyay A., and London E. Spectroscopic and ionization properties of N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)-labeled lipids in model membranes. Biochim. Biophys. Acta 938 (1988) 24-34
12. Lin S., and Struve W.S. Time-resolved fluorescence of nitrobenzoxadiazole-aminohexanoic acid: effect of intermolecular hydrogen-bonding on non-radiative decay. Photochem. Photobiol. 54 (1991) 361-365
13. Fery-Forgues S., Fayet J.P., and Lopez A. Drastic changes in the fluorescence properties of NBD probes with the polarity of the medium: involvement of a TICT state?. J. Photochem. Photobiol., A 70 (1993) 229-243
14. Mukherjee S., Chattopadhyay A., Samanta A., and Soujanya T. Dipole moment change of NBD group upon excitation studied using solvatochromic and quantum chemical approaches: implications in membrane research. J. Phys. Chem. 98 (1994) 2809-2812
15. Chattopadhyay A., Mukherjee S., and Raghuraman H. Reverse micellar organization and dynamics: a wavelength-selective fluorescence approach. J. Phys. Chem., B 106 (2002) 13002-13009
16. van Meer G.E., Stelzer H.K., Wijnaendts-van-Resandt R.W., and Simons K. Sorting of sphingolipids in epithelial (Madin-Darby canine kidney) cells. J. Cell Biol. 105 (1987) 1623-1635
17. Koval M., and Pagano R.E. Sorting of an internalized plasma membrane lipid between recycling and degradative pathways in normal and Niemann-Pick, type A fibroblasts. J. Cell Biol. 111 (1990) 429-442
18. Kelkar D.A., and Chattopadhyay A. Depth-dependent solvent relaxation in reverse micelles: a fluorescence approach. J. Phys. Chem., B 108 (2004) 12151-12158
19. Raghuraman H., Pradhan S.K., and Chattopadhyay A. Effect of urea on the organization and dynamics of Triton X-100 micelles: a fluorescence approach. J. Phys. Chem., B 108 (2004) 2489-2496
20. Chattopadhyay A. Exploring membrane organization and dynamics by the wavelength-selective fluorescence approach. Chem. Phys. Lipids 122 (2003) 3-17
21. Demchenko A.P. The red-edge effects: 30 years of exploration. Luminescence 17 (2002) 19-42
22. Raghuraman H., Kelkar D.A., and Chattopadhyay A. Novel insights into protein structure and dynamics utilizing the red edge excitation shift. In: Geddes C.D., and Lakowicz J.R. (Eds). Reviews in Fluorescence vol. 2 (2005), Springer, New York 199-222
23. Chattopadhyay A., and Mukherjee S. Depth-dependent solvent relaxation in membranes: wavelength-selective fluorescence as a membrane dipstick. Langmuir 15 (1999) 2142-2148
24. Chattopadhyay A., and London E. Parallax method for direct measurement of membrane penetration depth utilizing fluorescence quenching by spin-labeled phospholipids. Biochemistry 26 (1987) 39-45
25. Abrams F.S., and London E. Calibration of the parallax fluorescence quenching method for determination of membrane penetration depth: refinement and comparison of quenching by spin-labeled and brominated lipids. Biochemistry 31 (1992) 5312-5322
26. Wolf D.E., Winiski A.P., Ting A.E., Bocian K.M., and Pagano R.E. Determination of the transbilayer distribution of fluorescent lipid analogues by nonradiative fluorescence energy transfer. Biochemistry 31 (1992) 2865-2873
27. Huster D., Muller P., Arnold K., and Herrmann A. Dynamics of lipid chain attached fluorophore 7-nitrobenz-2-oxa-1,3-diazol-4-yl (NBD) in negatively charged membranes determined by NMR spectroscopy. Eur. Biophys. J. 32 (2003) 47-54
28. Tsukanova V., Grainger D.W., and Salesse C. Monolayer behavior of NBD-labeled phospholipids at the air/water interface. Langmuir 18 (2002) 5539-5550
29. Fernandes F., Loura L.M.S., Koehorst R., Spruijt R.B., Hemminga M.A., Fedorov A., and Prieto M. Quantification of protein-lipid selectivity using FRET: application to the M13 major coat protein. Biophys. J. 87 (2004) 344-352
30. Alakoskela J.-M.I., and Kinnunen P.K.J. Probing phospholipid main phase transition by fluorescence spectroscopy and a surface redox reaction. J. Phys. Chem., B 105 (2001) 11294-11301
31. Alakoskela J.-M.I., and Kinnunen P.K.J. Probing phospholipid main phase transition by fluorescence spectroscopy. In: Geddes C.D., and Lakowicz J.R. (Eds). Reviews in Fluorescence vol. 1 (2004), Kluwer-Plenum, New York 257-297
32. Dittmer J.C., and Lester R.L. Simple, specific spray for the detection of phospholipids on the thin-layer chromatograms. J. Lipid Res. 5 (1964) 126-127
33. McClare C.W.F. An accurate and convenient organic phosphorus assay. Anal. Biochem. 39 (1971) 527-530
34. Mukherjee S., and Chattopadhyay A. Monitoring cholesterol organization in membranes at low concentrations utilizing the wavelength-selective fluorescence approach. Chem. Phys. Lipids 134 (2005) 79-84
35. Lakowicz J.R. Principles of fluorescence spectroscopy (1999), Kluwer-Plenum, New York
36. Loura L.M., Fedorov A., and Prieto M. Exclusion of a cholesterol analog from the cholesterol-rich phase in model membranes. Biochim. Biophys. Acta 1511 (2001) 236-243
37. Lentz B.R., Barenholtz Y., and Thompson T.E. Fluorescence depolarization studies of phase transitions and fluidity in phospholipid bilayers. 1. Single component phosphatidylcholine bilayers. Biochemistry 15 (1976) 4521-4528
38. Mazeres S., Schram V., Tocanne J.-F., and Lopez A. 7-Nitrobenz-2-oxa-1,3-diazole-4-yl-labeled phospholipids in lipid membranes: differences in fluorescence behavior. Biophys. J. 71 (1996) 327-335
39. In: Mentré P. (Ed). Water in the Cell. Cell. Mol. Biol. vol. 47 (2001) 709-970
40. Raghuraman H., Ganguly S., and Chattopadhyay A. Effect of ionic strength on the organization and dynamics of membrane-bound melittin. Biophys. Chem. 124 (2006) 115-124
41. Mukherjee S., Raghuraman H., and Chattopadhyay A. Membrane localization and dynamics of Nile Red: effect of cholesterol. Biochim. Biophys. Acta 1768 (2007) 59-66
42. MacPhee C.E., Howlett G.J., Sawyer W.H., and Clayton A.H. Helix-helix association of a lipid-bound amphipathic alpha-helix derived from apolipoprotein-C-II. Biochemistry 38 (1999) 10878-10884
43. Santos N.C., Prieto M., and Castanho M.A.R.B. Interaction of the major epitope region of HIV protein gp41 with membrane model systems. A fluorescence spectroscopy study. Biochemistry 37 (1998) 8764-8775
44. Lakowicz J.R., and Keating-Nakamoto S. Red-edge excitation of fluorescence and dynamic properties of proteins and membranes. Biochemistry 23 (1984) 3013-3021
45. Prendergast F.G. Time-resolved fluorescence techniques: methods and applications in biology. Curr. Opin. Struct. Biol. 1 (1991) 1054-1059
46. Arvinte T., Cudd A., and Hildenbrand K. Fluorescence studies of the incorporation of N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)-labeled phosphatidylethanolamines into liposomes. Biochim. Biophys. Acta 860 (1986) 215-228
47. Chattopadhyay A., and Mukherjee S. Fluorophore environments in membrane-bound probes: a red edge excitation shift study. Biochemistry 32 (1993) 3804-3811
48. In: Kinnunen P.K.J., and Laggner P. (Eds). Special Issue of Phospholipid Phase Transitions. Chem. Phys. Lipids vol. 57 (1991) 109-408
49. Lewis R.N.A.H., and McElhaney R.N. The mesomorphic phase behavior of lipid bilayers. In: Yeagle P.L. (Ed). The Structure of Biological Membranes. 2nd ed. (2005), CRC Press, Boca Raton, FL 53-120
50. Loura L.M.S., and Ramhalho J.P.P. Location and dynamics of acyl chain NBD-labeled phosphatidylcholine (NBD-PC) in DPPC bilayers. A molecular dynamics and time-resolved fluorescence anisotropy study. Biochim. Biophys. Acta 1768 (2007) 467-478
51. Yau M.-H., Wimley W.C., Gawrisch K., and White S.H. The preference of tryptophan for membrane interfaces. Biochemistry 37 (1998) 14713-14718