메뉴 건너뛰기




Volumn 90, Issue 1, 2007, Pages 29-50

Current molecular techniques for the detection of microbial pathogens

Author keywords

Cell culture; Microbial pathogens; Molecular detection of microbes

Indexed keywords


EID: 34047257881     PISSN: 00368504     EISSN: None     Source Type: Journal    
DOI: 10.3184/003685007780440521     Document Type: Review
Times cited : (20)

References (50)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., Ludwig, W. and Schleifer, K. H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev., 59, 143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 2
    • 3042709468 scopus 로고    scopus 로고
    • Non-culturable bacteria in complex commensal populations
    • Wade, W. G. (2004) Non-culturable bacteria in complex commensal populations. Adv. Appl. Microbiol., 54, 93-106.
    • (2004) Adv. Appl. Microbiol. , vol.54 , pp. 93-106
    • Wade, W.G.1
  • 3
    • 0032827282 scopus 로고    scopus 로고
    • Evaluation of purification procedures for DNA extracted from organic rich samples: Interference with humic substances
    • Harry, M., Gambier, B., Bourezgui, Y. and Garnier-Sillam, E. (1999) Evaluation of purification procedures for DNA extracted from organic rich samples: interference with humic substances. Analysis, 27, 439-442.
    • (1999) Analysis , vol.27 , pp. 439-442
    • Harry, M.1    Gambier, B.2    Bourezgui, Y.3    Garnier-Sillam, E.4
  • 4
    • 33750167551 scopus 로고    scopus 로고
    • The use of magnetic nanoparticles in the development of new molecular detection systems
    • Magnani, M., Galluzzi, L. and Bruce, I. J. (2006) The use of magnetic nanoparticles in the development of new molecular detection systems. J. Nanosci. Nanotechnol., 6, 2302-2311.
    • (2006) J. Nanosci. Nanotechnol. , vol.6 , pp. 2302-2311
    • Magnani, M.1    Galluzzi, L.2    Bruce, I.J.3
  • 5
    • 0031242796 scopus 로고    scopus 로고
    • Improved Manufacture and Application of an Agarose Magnetisable Solid-Phase Support
    • Smethurst, D., Davies, M., Howard, K., Todd, M. and Bruce, I. J. (1997) Improved Manufacture and Application of an Agarose Magnetisable Solid-Phase Support. Appl. Biochem. Biotechnol., 68, 95-112.
    • (1997) Appl. Biochem. Biotechnol. , vol.68 , pp. 95-112
    • Smethurst, D.1    Davies, M.2    Howard, K.3    Todd, M.4    Bruce, I.J.5
  • 7
    • 0034683143 scopus 로고    scopus 로고
    • Application of magnetite and silica-magnetite composites to the isolation of genomic DNA
    • Taylor, J. I., Hurst, C. D., Davies, M. J., Sachsinger, N. and Bruce, I. J. (2000) Application of magnetite and silica-magnetite composites to the isolation of genomic DNA. J. Chromatogr. A, 890, 159-166.
    • (2000) J. Chromatogr. A , vol.890 , pp. 159-166
    • Taylor, J.I.1    Hurst, C.D.2    Davies, M.J.3    Sachsinger, N.4    Bruce, I.J.5
  • 8
    • 2342561087 scopus 로고    scopus 로고
    • Direct detection of Listeria monocytogenes from milk by magnetic based DNA isolation and PCR
    • Amagliani, G., Brandi, G., Omiccioli, E., Casiere, A., Bruce, I. J. and Magnani, M.(2004) Direct detection of Listeria monocytogenes from milk by magnetic based DNA isolation and PCR. Food Microbiology, 21, 597-603.
    • (2004) Food Microbiology , vol.21 , pp. 597-603
    • Amagliani, G.1    Brandi, G.2    Omiccioli, E.3    Casiere, A.4    Bruce, I.J.5    Magnani, M.6
  • 9
    • 23144458654 scopus 로고    scopus 로고
    • Surface modification of magnetic nanoparticles with alkoxysilanes and their application in magnetic bioseparations
    • Bruce, I. J. and Sen, T. (2005) Surface modification of magnetic nanoparticles with alkoxysilanes and their application in magnetic bioseparations. Langmuir, 21, 7029-7035.
    • (2005) Langmuir , vol.21 , pp. 7029-7035
    • Bruce, I.J.1    Sen, T.2
  • 10
    • 33745479210 scopus 로고    scopus 로고
    • Capture probe conjugated to paramagnetic nanoparticles for purification of Alexandrium species (Dinophyceae) DNA from environmental samples
    • Galluzzi, L., Bertozzini, E., del Campo, A., Penna, A., Bruce, I. J. and Magnani,M. (2006) Capture probe conjugated to paramagnetic nanoparticles for purification of Alexandrium species (Dinophyceae) DNA from environmental samples. J. Appl. Microbiol., 101, 36-43.
    • (2006) J. Appl. Microbiol. , vol.101 , pp. 36-43
    • Galluzzi, L.1    Bertozzini, E.2    del Campo, A.3    Penna, A.4    Bruce, I.J.5    Magnani, M.6
  • 11
    • 33744939710 scopus 로고    scopus 로고
    • Meso-structured superparamagnetic nanospheres and nanotubes: Smart materials for bioseparations
    • Sen, T., Sebastianelli, A. and Bruce, I. J. (2006) Meso-structured superparamagnetic nanospheres and nanotubes: smart materials for bioseparations. J. Am. Chem. Soc., 128, 7130-7131.
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 7130-7131
    • Sen, T.1    Sebastianelli, A.2    Bruce, I.J.3
  • 12
    • 0343192453 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization (FISH) for direct visualization of micro-organisms
    • Moter, A. and Gobel, U. B. (2000) Fluorescence in situ hybridization (FISH) for direct visualization of micro-organisms. J. Microbiol. Meth., 41, 85-112.
    • (2000) J. Microbiol. Meth. , vol.41 , pp. 85-112
    • Moter, A.1    Gobel, U.B.2
  • 13
    • 0035370087 scopus 로고    scopus 로고
    • The identification of micro-organisms by fluorescence in situ hybridisation
    • Amann, R., Fuchs, B. M. and Behrens, S. (2001) The identification of micro-organisms by fluorescence in situ hybridisation. Curr. Opin. Biotechnol., 12, 231-236.
    • (2001) Curr. Opin. Biotechnol. , vol.12 , pp. 231-236
    • Amann, R.1    Fuchs, B.M.2    Behrens, S.3
  • 14
    • 0038265129 scopus 로고    scopus 로고
    • Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes
    • Wagner, M., Horny, M. and Daims, H. (2003) Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes. Curr. Opin. Microbiol., 6, 302-309.
    • (2003) Curr. Opin. Microbiol. , vol.6 , pp. 302-309
    • Wagner, M.1    Horny, M.2    Daims, H.3
  • 15
    • 33645059997 scopus 로고    scopus 로고
    • Development and application of fluorescence in situ hybridization (FISH) method for simple and rapid identification of the toxic dinoflagellates Alexandrium, tamarense and Alexandrium catenella in cultured and natural seawater
    • Hosoi-Tanabe, S. and Sako, Y. (2006) Development and application of fluorescence in situ hybridization (FISH) method for simple and rapid identification of the toxic dinoflagellates Alexandrium, tamarense and Alexandrium catenella in cultured and natural seawater Fish. Sci., 72, 77-82.
    • (2006) Fish. Sci. , vol.72 , pp. 77-82
    • Hosoi-Tanabe, S.1    Sako, Y.2
  • 16
    • 16844376577 scopus 로고    scopus 로고
    • Direct identification of major blood culture pathogens, including Pseudomonas aeruginosa and Escherichia coli, by a panel of fluorescence in situ hybridization assays using peptide nucleic acid probes
    • Sogaard, M., Stender, H. and Schonheyder, H. C. (2005) Direct identification of major blood culture pathogens, including Pseudomonas aeruginosa and Escherichia coli, by a panel of fluorescence in situ hybridization assays using peptide nucleic acid probes. J. Clin. Microbiol., 43, 1947-1949.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 1947-1949
    • Sogaard, M.1    Stender, H.2    Schonheyder, H.C.3
  • 18
    • 18444400240 scopus 로고    scopus 로고
    • Enumeration of respiring Pseudomonas spp. in milk within 6 hours by fluorescence in situ hybridization following formazan reduction
    • Kitaguchi, A., Yamaguchi, N. and Nasu, M. (2005) Enumeration of respiring Pseudomonas spp. in milk within 6 hours by fluorescence in situ hybridization following formazan reduction. Appl. Environ. Microbiol., 71, 2748-2752.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 2748-2752
    • Kitaguchi, A.1    Yamaguchi, N.2    Nasu, M.3
  • 19
    • 0345167137 scopus 로고    scopus 로고
    • Seven-hour fluorescence in situ hybridization technique for enumeration of Enterobacteriaceae in food and environmental water sample
    • Ootsubo, M., Shimizu, T., Tanaka, R., Sawabe, T., Tajima, K. and Ezura, Y. (2003) Seven-hour fluorescence in situ hybridization technique for enumeration of Enterobacteriaceae in food and environmental water sample. J. Appl. Microbiol., 95, 1182-1190.
    • (2003) J. Appl. Microbiol. , vol.95 , pp. 1182-1190
    • Ootsubo, M.1    Shimizu, T.2    Tanaka, R.3    Sawabe, T.4    Tajima, K.5    Ezura, Y.6
  • 20
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., de Waal, E. C. and Uitterlinden, A. G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol., 59, 695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 21
    • 0031882598 scopus 로고    scopus 로고
    • Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities
    • Clement, B. G., Kehl, L. E., De Bord, K. L. and Kitts, C. L. (1998) Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities. J. Microbiol. Meth., 31, 135-142.
    • (1998) J. Microbiol. Meth. , vol.31 , pp. 135-142
    • Clement, B.G.1    Kehl, L.E.2    De Bord, K.L.3    Kitts, C.L.4
  • 22
    • 0037812020 scopus 로고    scopus 로고
    • PCR methodology as a valuable tool for identification of endodontic pathogens
    • Siqueira, J. F. and Rôş, I. N. (2003) PCR methodology as a valuable tool for identification of endodontic pathogens. J. Dent., 31, 333-339.
    • (2003) J. Dent. , vol.31 , pp. 333-339
    • Siqueira, J.F.1    Rôş, I.N.2
  • 23
    • 14844334569 scopus 로고    scopus 로고
    • 2005 Multiplex PCR for simultaneous detection of Salmonella spp., Listeria monocytogenes, and Escherichia coli O157:H7 in meat samples
    • Kawasaki, S., Horikoshi, N., Okada, Y., Takeshita, K., Sameshima, T. and Kawamoto, S. (2005) Multiplex PCR for simultaneous detection of Salmonella spp., Listeria monocytogenes, and Escherichia coli O157:H7 in meat samples. J. Food Prot., 68, 551-556.
    • J. Food Prot. , vol.68 , pp. 551-556
    • Kawasaki, S.1    Horikoshi, N.2    Okada, Y.3    Takeshita, K.4    Sameshima, T.5    Kawamoto, S.6
  • 24
    • 0030823828 scopus 로고    scopus 로고
    • Rapid, sensitive, microbial detection by gene amplification using restriction endonuclease sequences
    • Metherell, L., Hurst, C. and Bruce, I. J. (1997) Rapid, sensitive, microbial detection by gene amplification using restriction endonuclease sequences. Mol. Cell. Probes, 11, 297-308.
    • (1997) Mol. Cell. Probes , vol.11 , pp. 297-308
    • Metherell, L.1    Hurst, C.2    Bruce, I.J.3
  • 25
    • 1642318064 scopus 로고    scopus 로고
    • Real-time PCR in the microbiology laboratory
    • Mackay, I. M. (2004) Real-time PCR in the microbiology laboratory. Clin. Microbiol. Infect., 10, 190-212.
    • (2004) Clin. Microbiol. Infect. , vol.10 , pp. 190-212
    • Mackay, I.M.1
  • 26
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: Probes that fluoresce upon hybridisation
    • Tyagi, S. and Kramer, F. R. (1996) Molecular beacons: probes that fluoresce upon hybridisation. Nat. Biotechnol., 14, 303-308.
    • (1996) Nat. Biotechnol. , vol.14 , pp. 303-308
    • Tyagi, S.1    Kramer, F.R.2
  • 27
    • 33746216159 scopus 로고    scopus 로고
    • Identification and characterization of bacterial pathogens causing bloodstream infections by DNA microarray
    • Cleven, B. E., Palka-Santini, M., Gielen, J., Meembor, S., Kronke, M. and Krut, O. (2006) Identification and characterization of bacterial pathogens causing bloodstream infections by DNA microarray. J. Clin. Microbiol., 44, 2389-97.
    • (2006) J. Clin. Microbiol. , vol.44 , pp. 2389-2397
    • Cleven, B.E.1    Palka-Santini, M.2    Gielen, J.3    Meembor, S.4    Kronke, M.5    Krut, O.6
  • 28
    • 25444437749 scopus 로고    scopus 로고
    • A method for representatively amplifying genomic DNA
    • April/May 2003
    • Mamone, T. (2003) A method for representatively amplifying genomic DNA. Genomic/Proteomic Technol., April/May 2003, 21-24.
    • (2003) Genomic/Proteomic Technol. , pp. 21-24
    • Mamone, T.1
  • 29
    • 0026418667 scopus 로고
    • Nucleic acid sequence-based amplification
    • Compton, J. (1991) Nucleic acid sequence-based amplification. Nature, 350, 91-92.
    • (1991) Nature , vol.350 , pp. 91-92
    • Compton, J.1
  • 31
    • 33645832164 scopus 로고    scopus 로고
    • Trinucleotide threading for parallel amplification of minute amounts of genomic DNA
    • Pettersson, E., Lindskog, M., Lundeberg, J. and Ahmadian, A. (2006) Trinucleotide threading for parallel amplification of minute amounts of genomic DNA. Nucleic Acids Res., 34, e49.
    • (2006) Nucleic Acids Res. , vol.34
    • Pettersson, E.1    Lindskog, M.2    Lundeberg, J.3    Ahmadian, A.4
  • 32
    • 34047259291 scopus 로고    scopus 로고
    • DNA microarray for detection of antibiotic resistance determinants in Bacillus anthracis and closely related Bacillus cereus
    • Oct 18, [Epub ahead of print]
    • Antwerpen, M. H., Schellhase, M., Ehrentreich-Forster, E., Bier, F., Witte, W. and Nubel, U. (2006) DNA microarray for detection of antibiotic resistance determinants in Bacillus anthracis and closely related Bacillus cereus. Mol. Cell. Probes, Oct 18, [Epub ahead of print].
    • (2006) Mol. Cell. Probes
    • Antwerpen, M.H.1    Schellhase, M.2    Ehrentreich-Forster, E.3    Bier, F.4    Witte, W.5    Nubel, U.6
  • 34
    • 9144220943 scopus 로고    scopus 로고
    • A virulence-associated gene microarray: A tool for investigation of the evolution and pathogenic potential of Staphylococcus aureus
    • Saunders, N. A., Underwood, A., Kearns, A. M. and Hallas, G. (2004) A virulence-associated gene microarray: a tool for investigation of the evolution and pathogenic potential of Staphylococcus aureus. Microbiol., 150, 3763-3771.
    • (2004) Microbiol. , vol.150 , pp. 3763-3771
    • Saunders, N.A.1    Underwood, A.2    Kearns, A.M.3    Hallas, G.4
  • 36
    • 0037401015 scopus 로고    scopus 로고
    • Detection of bacterial pathogens in environmental samples using DNA microarrays
    • Call, D. R., Borucki, M. K. and Loge, F. J. (2003) Detection of bacterial pathogens in environmental samples using DNA microarrays. J. Microbiol. Meth., 53, 235-243.
    • (2003) J. Microbiol. Meth. , vol.53 , pp. 235-243
    • Call, D.R.1    Borucki, M.K.2    Loge, F.J.3
  • 37
    • 0344874218 scopus 로고    scopus 로고
    • Transcription profiles of the bacterium Mycoplasma pneumoniae at different temperatures
    • Weiner, III, J., Zimmerman, C.-U., Gohlmann, H. W. H. and Herman, R. (2003) Transcription profiles of the bacterium Mycoplasma pneumoniae at different temperatures. Nucl. Acids Res., 31, 6306-6320.
    • (2003) Nucl. Acids Res. , vol.31 , pp. 6306-6320
    • Weiner III, J.1    Zimmerman, C.-U.2    Gohlmann, H.W.H.3    Herman, R.4
  • 38
    • 17044386980 scopus 로고    scopus 로고
    • Design and application of an oligonucleotide microarray for the investigation of compost microbial communities
    • Franke-Whittle, I. H., Klammer, S.-H. and Insam, H. (2005) Design and application of an oligonucleotide microarray for the investigation of compost microbial communities. J. Microbiol. Meth., 62, 37-56.
    • (2005) J. Microbiol. Meth. , vol.62 , pp. 37-56
    • Franke-Whittle, I.H.1    Klammer, S.-H.2    Insam, H.3
  • 39
    • 2942527326 scopus 로고    scopus 로고
    • Oligonucleotide microarrays in microbial diagnostics
    • Bodrossy, L. and Sessitsch, A. (2004) Oligonucleotide microarrays in microbial diagnostics. Curr. Opin. Microbiol., 7, 245-254.
    • (2004) Curr. Opin. Microbiol. , vol.7 , pp. 245-254
    • Bodrossy, L.1    Sessitsch, A.2
  • 40
    • 0035168393 scopus 로고    scopus 로고
    • Applications of DNA microarrays in microbial systems
    • Ye, R. W., Wang, T., Bedzyk, L. and Croker, K. M. (2001) Applications of DNA microarrays in microbial systems. J. Microbiol. Meth., 47, 257-272.
    • (2001) J. Microbiol. Meth. , vol.47 , pp. 257-272
    • Ye, R.W.1    Wang, T.2    Bedzyk, L.3    Croker, K.M.4
  • 41
    • 0036193078 scopus 로고    scopus 로고
    • Quantitative detection of microbial genes by using DNA microarrays
    • Cho, J.-C. and Tiedje, J. M. (2002) Quantitative detection of microbial genes by using DNA microarrays. Appl. Environ. Microbiol., 68, 1425-1430.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1425-1430
    • Cho, J.-C.1    Tiedje, J.M.2
  • 43
    • 0037614638 scopus 로고    scopus 로고
    • Rapid identification of Escherichia coli pathotypes by virulence gene detection with DNA microarrays
    • Bekal, S., Brousseau, R., Masson, L., Prefontaine, G., Fairbrother, J. and Harel, J. (2003) Rapid identification of Escherichia coli pathotypes by virulence gene detection with DNA microarrays. J. Clin. Microbiol., 41, 2113-2125.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 2113-2125
    • Bekal, S.1    Brousseau, R.2    Masson, L.3    Prefontaine, G.4    Fairbrother, J.5    Harel, J.6
  • 44
    • 0036899178 scopus 로고    scopus 로고
    • Identification of Listeria species by microarray-based assay
    • Volokhov, D., Rasooly, A., Chumakov, K. and Chizhikov, V. (2002) Identification of Listeria species by microarray-based assay. J. Clin. Microbiol., 40, 4720-4728.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 4720-4728
    • Volokhov, D.1    Rasooly, A.2    Chumakov, K.3    Chizhikov, V.4
  • 45
    • 0037031130 scopus 로고    scopus 로고
    • Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples
    • Wang, R.-F., Beggs, M. L., Robertson, L. H. and Cernigtia, C. E. (2002) Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. FEMS Microbiol. Lett., 213, 175-182.
    • (2002) FEMS Microbiol. Lett. , vol.213 , pp. 175-182
    • Wang, R.-F.1    Beggs, M.L.2    Robertson, L.H.3    Cernigtia, C.E.4
  • 47
    • 0037401010 scopus 로고    scopus 로고
    • Molecular methods for assessment of bacterial viability
    • Keer, J. T. and Birch, L. (2003) Molecular methods for assessment of bacterial viability. J. Microbiol. Meth., 53, 175-183.
    • (2003) J. Microbiol. Meth. , vol.53 , pp. 175-183
    • Keer, J.T.1    Birch, L.2
  • 48
    • 29144467034 scopus 로고    scopus 로고
    • Chip devices for miniaturized biotechnology
    • Kohler, J. M. and Henkel, T. (2005) Chip devices for miniaturized biotechnology. Appl. Microbiol. Biotechnol., 69, 113-125.
    • (2005) Appl. Microbiol. Biotechnol. , vol.69 , pp. 113-125
    • Kohler, J.M.1    Henkel, T.2
  • 49
    • 15044353954 scopus 로고    scopus 로고
    • Environmental microbiology-on-a-chip and its future impacts
    • Liu, W. T. and Zhu, L. (2005) Environmental microbiology-on-a-chip and its future impacts. Trends Biotechnol., 23, 174-179.
    • (2005) Trends Biotechnol. , vol.23 , pp. 174-179
    • Liu, W.T.1    Zhu, L.2
  • 50
    • 1842477059 scopus 로고    scopus 로고
    • Self-Contained, Fully Integrated Biochip for Sample Preparation, Polymerase Chain Reaction Amplification, and DNA Microarray Detection
    • Liu, R. H., Yang, J., Lenigk, R., Bonanno, J. and Grodzinski, P. (2004) Self-Contained, Fully Integrated Biochip for Sample Preparation, Polymerase Chain Reaction Amplification, and DNA Microarray Detection. Anal. Chem., 76, 1824-1831.
    • (2004) Anal. Chem. , vol.76 , pp. 1824-1831
    • Liu, R.H.1    Yang, J.2    Lenigk, R.3    Bonanno, J.4    Grodzinski, P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.