-
1
-
-
13744262451
-
Modelling periodic oscillation in gene regulatory networks by cyclic feedback systems
-
Wang, R., Jing, Z., and Chen, L. Modelling periodic oscillation in gene regulatory networks by cyclic feedback systems. Bulletin of Mathematical Biology, 67: 339-367, 2005.
-
(2005)
Bulletin of Mathematical Biology
, vol.67
, pp. 339-367
-
-
Wang, R.1
Jing, Z.2
Chen, L.3
-
2
-
-
18444389980
-
Synchronizing genetic oscillators by signalling molecules
-
Wang, R., and Chen, L. Synchronizing genetic oscillators by signalling molecules. Journal of Biological Rhythms, 20: 257-269, 2005.
-
(2005)
Journal of Biological Rhythms
, vol.20
, pp. 257-269
-
-
Wang, R.1
Chen, L.2
-
3
-
-
37649029024
-
Dynamics of gene regulatory networks with cell division cycle
-
Chen, L., Wang, R., Kobayashi, T., and Aihara, K. Dynamics of gene regulatory networks with cell division cycle. Physical Review E, 70: 011909, 2004.
-
(2004)
Physical Review E
, vol.70
, pp. 011909
-
-
Chen, L.1
Wang, R.2
Kobayashi, T.3
Aihara, K.4
-
4
-
-
20744444887
-
Noise-induced cooperative behavior in a multi-cell system
-
Chen, L., Wang, R., Zhou, T., and Aihara, K. Noise-induced cooperative behavior in a multi-cell system. Bioinformatics, 21: 2722-2729, 2005.
-
(2005)
Bioinformatics
, vol.21
, pp. 2722-2729
-
-
Chen, L.1
Wang, R.2
Zhou, T.3
Aihara, K.4
-
5
-
-
0141593601
-
Conserved pathways within bacteria and yeast as revealed by global protein network alignment
-
Kelley, B.P., Sharan, R., Karp, R., Sittler, E.T., Root, D.E., Stockwell, B.R., and Ideker, T. Conserved pathways within bacteria and yeast as revealed by global protein network alignment. Proc. Natl Acad. Sci. USA. 100:11394-11399, 2003.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 11394-11399
-
-
Kelley, B.P.1
Sharan, R.2
Karp, R.3
Sittler, E.T.4
Root, D.E.5
Stockwell, B.R.6
Ideker, T.7
-
6
-
-
3442886313
-
PathBLAST: A tool for alignment of protein interaction networks
-
Kelley,P.B., Yuan,B., Lewitter,F., Sharan,R., Stockwell,B.R., and Ideker,T. PathBLAST: a tool for alignment of protein interaction networks. Nucleic Acids Research 32:83-88, 2004.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 83-88
-
-
Kelley, P.B.1
Yuan, B.2
Lewitter, F.3
Sharan, R.4
Stockwell, B.R.5
Ideker, T.6
-
7
-
-
6944240088
-
Local graph algorithm and motif search in biological networks
-
Berg,J., and Lassing,M. Local graph algorithm and motif search in biological networks. Proc. Natl. Acad. Sci. USA 101: 14689-14694, 2004.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 14689-14694
-
-
Berg, J.1
Lassing, M.2
-
8
-
-
26444593028
-
-
Koyutürk.M., Grama, A., and Szpankowski, W. Pairwise local alignment of protein interaction network guided by models of evolution. RECOM 2005, Lecture notes in bioinformatics, 3500: 48-65, 2005.
-
Koyutürk.M., Grama, A., and Szpankowski, W. Pairwise local alignment of protein interaction network guided by models of evolution. RECOM 2005, Lecture notes in bioinformatics, 3500: 48-65, 2005.
-
-
-
-
9
-
-
0034667776
-
A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters
-
Ogata,H., Fujibuchi,W.,Goto,S., and Kanehisa,M., A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters. Nucleic Acids Research, 28(20): 4021-4028, 2000.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.20
, pp. 4021-4028
-
-
Ogata, H.1
Fujibuchi, W.2
Goto, S.3
Kanehisa, M.4
-
10
-
-
0035861990
-
automatic clustering of orthologs and in-paralogs from pairs species comparisons
-
Remm M., Storm C. E.V., and Sonnhammer E.L.I., automatic clustering of orthologs and in-paralogs from pairs species comparisons, J. Mol. Bio., 314:1041-1052, 2001.
-
(2001)
J. Mol. Bio
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.V.2
Sonnhammer, E.L.I.3
-
11
-
-
0003516147
-
-
Cambridge University Press, Cambridge
-
Durbin,R., Eddy,S.R., Krogh,A., and Mitchison, G., Biological Sequence analyses: Probabilitic Methods of Proteins and Nucleic Acids, Cambridge University Press, Cambridge, 1998.
-
(1998)
Biological Sequence analyses: Probabilitic Methods of Proteins and Nucleic Acids
-
-
Durbin, R.1
Eddy, S.R.2
Krogh, A.3
Mitchison, G.4
-
12
-
-
33644835242
-
Inferring Protein Interactions from Experimental Data by Association Probabilistic Method
-
Chen,L., Wu,L-Y., Wang,Y., Zhang,X-S. Inferring Protein Interactions from Experimental Data by Association Probabilistic Method. Proteins, 62: 833-837, 2006.
-
(2006)
Proteins
, vol.62
, pp. 833-837
-
-
Chen, L.1
Wu, L.-Y.2
Wang, Y.3
Zhang, X.-S.4
-
13
-
-
84872222974
-
Functional alignment of regulatory networks: A study of temerate phages
-
Ala Trusina, Kim Sneppen, I. B. Dodd, K. E. Shearwin and J. B. Egan., Functional alignment of regulatory networks: A study of temerate phages. Plos Computational Biology 1, 2005.
-
(2005)
Plos Computational Biology
, vol.1
-
-
Trusina, A.1
Sneppen, K.2
Dodd, I.B.3
Shearwin, K.E.4
Egan, J.B.5
-
14
-
-
0347473809
-
Gaining confidence in high-throughput protein interaction networks
-
Bader, J.S., Chaudhuri, A., Rothberg, J.M., Chant, J. Gaining confidence in high-throughput protein interaction networks. Nat. Biotechnol., 22:78-85, 2004.
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 78-85
-
-
Bader, J.S.1
Chaudhuri, A.2
Rothberg, J.M.3
Chant, J.4
-
15
-
-
0037482108
-
Assessment of the reliability of protein-protein interactions and protein function prediction
-
Deng, M., Sun, F. and Chen, T. Assessment of the reliability of protein-protein interactions and protein function prediction. Pacific Symposium on Biocomputing(PSB2003), 140-151, 2003.
-
(2003)
Pacific Symposium on Biocomputing(PSB2003)
, pp. 140-151
-
-
Deng, M.1
Sun, F.2
Chen, T.3
-
16
-
-
33644656793
-
Systematic identification of functional orthologs based on protein network comparison
-
doi:10.1101/gr.4526003
-
Bandyopadhyay, S., Sharan, R., Ideker, T. Systematic identification of functional orthologs based on protein network comparison Genome Res. doi:10.1101/gr.4526003, 2006.
-
(2006)
Genome Res
-
-
Bandyopadhyay, S.1
Sharan, R.2
Ideker, T.3
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