Panmictic population structure in the hooded seal (Cystophora cristata)

Molecular Ecology

Volumn 16, Issue 8, 2007, Pages 1639-1648

  Coltman, D W ^a   Stenson, G ^b   Hammill, M O ^b   Haug, T ^c   Davis, C S ^a   Fulton, T L ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

^b FISHERIES AND OCEANS CANADA   (Canada)

^c INSTITUTE OF MARINE RESEARCH   (Norway)

Author keywords

FST; Microsatellite; Mitochondrial DNA; Phylogeography; Pinniped; Population genetics

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CHEMISTRY; DNA SEQUENCE; FEMALE; GENE FLOW; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; MALE; PHOCA; PHYLOGENY; PHYSIOLOGY; POPULATION DYNAMICS; SEXUAL BEHAVIOR;

ANIMALS; DNA, MITOCHONDRIAL; FEMALE; GENE FLOW; GENETIC MARKERS; GEOGRAPHY; HAPLOTYPES; MALE; MICROSATELLITE REPEATS; PHYLOGENY; POPULATION DYNAMICS; SEALS, EARLESS; SEQUENCE ANALYSIS, DNA; SEXUAL BEHAVIOR, ANIMAL; VARIATION (GENETICS);

CYSTOPHORA (MAMMALIA); CYSTOPHORA CRISTATA; PINNIPEDIA;

EID: 34047154500     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2007.03229.x     Document Type: Article

References (49)

1. Allen PJ, Amos W, Pomeroy PP, Twiss SD (1995) Microsatellite variation in grey seals (Halichoerus grypus) shows evidence of genetic differentiation between two British breeding colonies. Molecular Ecology, 4, 653-662.
2. Anonymous (2006) Report of the ICES/NAFO Working Group on Harp and Hooded Seals (WGHARP), 28 pp. International Council for the Exploration of the Sea, Copenhagen. Avise JC (1994) Molecular Markers, Natural History and Evolution. Chapman & Hall, London.
3. Baker AR, Loughlin TR, Burkanov V et al. (2005) Variation of mitochondrial control region sequences of Steller sea lions: the three-stock hypothesis. Journal of Mammalogy, 86, 1075-1084.
4. Boskovic R, Kovacs KM, Hammill MO, White BN (1996) Geographic distribution of mitochondrial DNA haplotypes in grey seals (Halichoerus grypus). Canadian Journal of Zoology-Revue Canadienne de Zoologie, 74, 1787-1796.
5. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1660.
6. Coltman DW, Bowen WD, Wright JM (1996) PCR primers for harbour seal (Phoca vitulina concolour) microsatellites amplify polymorphic loci in other pinniped species. Molecular Ecology, 5, 161-163.
7. Davis CS (2004) Phylogenetic Relationships of the Phocidae and Population Genetics of Ice Breeding Seals. PhD, University of Alberta, Edmonton, Canada.
8. Davis CS, Gelatt TS, Siniff D, Strobeck C (2002) Dinucleotide microsatellite markers from the Antarctic seals and their use in other Pinnipeds. Molecular Ecology Notes, 2, 203-208.
9. Delisle I, Strobeck C (2005) A phylogeny of the Caniformia (order Carnivora) based on 12 complete protein-coding mitochondrial genes. Molecular Phylogenetics and Evolution, 37, 192-201.
10. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes - application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
11. Excoffier L, Laval G, Schneider S (2005) ARLEQUIN version 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1.
12. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567-1587.
13. Folkow LP, Martensson PE, Blix AS (1996) Annual distribution of hooded seals (Cystophora cristata) in the Greenland and Norwegian Seas. Polar Biology, 16, 179-189.
14. Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915-925.
15. Goodman SJ (1997) Dinucleotide repeat polymorphisms at seven anonymous microsatellite loci cloned from the European harbour seal (Phoca vitulina vitulina). Animal Genetics, 28, 310-311.
16. Goudet J (1995) FSTAT (version 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86, 485-486.
17. Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics, 48, 361-372.
18. Hammill MO (1993) Seasonal movements of hooded seals tagged in the Gulf of St. Lawrence, Canada. Polar Biology, 13, 307-310.
19. Harpending HC (1994) Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology, 66, 591-600.
20. Hoelzel AR, Campagna C, Arnbom T (2001) Genetic and morphometric differentiation between island and mainland southern elephant seal populations. Proceedings of the Royal Society of London. Series B, Biological Sciences, 268, 325-332.
21. Jarne P, Lagoda PJL (1996) Microsatellites, from molecules to populations and back. Trends in Ecology & Evolution, 11, 424-429.
22. Marshall TC, Slate J, Kruuk LEB, Pemberton JM (1998) Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology, 7, 639-655.
23. Matthee CA, Fourie F, Oosthuizen WH, Meyer MA, Tolley KA (2006) Mitochondrial DNA sequence data of the Cape fur seal (Arctocephalus pusillus pusillus) suggest that population numbers may be affected by climatic shifts. Marine Biology, 148, 899-905.
24. Meisfjord J, Sundt RC (1996) Genetic variation between populations of the harp seal, Phoca groenlandica. Ices Journal of Marine Science, 53, 89-95.
25. Mignucci-Giannoni AA, Odell DK (2001) Tropical and subtropical records of hooded seals (Cystophora cristata) dispel the myth of extant Caribbean monk seals (Monachus tropicalis). Bulletin of Marine Science, 68, 47-58.
26. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
27. Perry EA, Stenson GB, Bartlett SE, Davidson WS, Carr SM (2000) DNA sequence analysis identifies genetically distinguishable populations of harp seals (Pagophilus groenlandicus) in the northwest and northeast Atlantic. Marine Biology, 137, 53-58.
28. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
29. Prugnolle F, de Meeus T (2002) Inferring sex-biased dispersal from population genetic tools: a review. Heredity, 88, 161-165.
30. Rasmussen B (1960) On the stock of hood seals in the northern Atlantic. Fish. Res. Board of Canada Translation Series No. 387.
31. Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
32. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552-569.
33. Rozas J, Sanchez-DeI, Barrio JC, Messeguer X, Rozas R (2003) DNASP: DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497.
34. Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
35. Sergeant DE (1974) A rediscovered whelping population of hooded seals, Cystophora cristata Erxleben and its possible relationships to other populations. Polarforschung, 44, 1-7.
36. Stanley HF, Casey S, Carnahan JM et al. (1996) Worldwide patterns of mitochondrial DNA differentiation in the harbor seal (Phoca vitulina). Molecular Biology and Evolution, 13, 368-382.
37. Stenson GB, Sjare BS, Potelov V (2006a) Tagging of the northwest Atlantic hooded seals (1983-2006): implication for stock structure. In: Meeting of the Joint ICES/NAFO Working Group on Harp and Hooded Seals, 2006. pp. SEA-157. Copenhagen, Denmark.
38. Stenson GB, Hammill MO, Poyot F, Fedak M (2006b) The seasonal distribution of hooded seals, Cystophora cristata, in the northwest Atlantic. In: Meeting of the Joint ICES/NAFO Working Group on Harp and Hooded Seals, pp. SEA-159. Copenhagen, Denmark.
39. Stirling I (1975) Factors affecting the evolution of social behaviour in the Pinnipedia. Rapp. P.-V. Reun. Conservation. Int. Explor. Mer., 169, 205-212.
40. Stirling I (1983) The evolution of mating systems in pinnipeds. In: Advances in the Study of Mammalian Behaviour (eds Eisenberg JF, Kleiman DG), pp. 489-527. American Society of Mammalogists, Shippensburg, Pennsylvania.
41. Summers K, Amos W (1997) Behavioral, ecological, and molecular genetic analyses of reproductive strategies in the Amazonian dart-poison frog, Dendrobates ventrimaculatus. Behavioral Ecology, 8, 260-267.
42. Sundt RC, Dahle G, Naevdal G (1994) Genetic variation in the hooded seal, Cystophora cristata, based on enzyme polymorphism and multilocus DNA fingerprinting. Hereditas, 121, 147-155.
43. Swofford DL (2003) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods) version 4.0b10. Sinauer Associates, Sunderland, Massachusetts.
44. Tamura L, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512-526.
45. Weber DS, Stewart BS, Lehman N (2004) Genetic consequences of a severe population bottleneck in the Guadalupe fur seal (Arctocephalus townsendi). Journal of Heredity, 95, 144-153.
46. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
47. Westlake RL, O'Corry-Crowe GM (2002) Macrogeographic structure and patterns of genetic diversity in harbor seals (Phoca vitulina) from Alaska to Japan. Journal of Mammalogy, 83, 1111-1126.
48. Wiig O, Lie RW (1984) An analysis of the morphological relationships between the hooded seals (Cystophora cristata) of Newfoundland, the Denmark Strait, and Jan Mayen. Journal of Zoology, 203, 227-240.
49. Zar JH (1996) Biostatistical Analysis. 3rd edn. Prentice Hall, London.