-
1
-
-
0347479229
-
Molecular basis of bacterial outer membrane permeability revisited
-
Nikaido H. Molecular basis of bacterial outer membrane permeability revisited. Microbiol. Mol. Biol. Rev. 67 (2003) 593-656
-
(2003)
Microbiol. Mol. Biol. Rev.
, vol.67
, pp. 593-656
-
-
Nikaido, H.1
-
2
-
-
0141585145
-
Solute uptake through general porins
-
Delcour A.H. Solute uptake through general porins. Front. Biosci. 8 (2003) 1055-1071
-
(2003)
Front. Biosci.
, vol.8
, pp. 1055-1071
-
-
Delcour, A.H.1
-
3
-
-
4143053450
-
Salting out the ionic selectivity of a wide channel: the asymmetry of OmpF
-
Alcaraz A., Aguilella-Arzo M., Nestorovich E.M., Aguilella V.M., and Bezrukov S.M. Salting out the ionic selectivity of a wide channel: the asymmetry of OmpF. Biophys. J. 87 (2004) 943-957
-
(2004)
Biophys. J.
, vol.87
, pp. 943-957
-
-
Alcaraz, A.1
Aguilella-Arzo, M.2
Nestorovich, E.M.3
Aguilella, V.M.4
Bezrukov, S.M.5
-
5
-
-
3142652094
-
Theoretical and computational models of biological ion channels
-
Roux B., Allen T., Bernèche S., and Im W. Theoretical and computational models of biological ion channels. Q. Rev. Biophys. 37 (2004) 15-103
-
(2004)
Q. Rev. Biophys.
, vol.37
, pp. 15-103
-
-
Roux, B.1
Allen, T.2
Bernèche, S.3
Im, W.4
-
6
-
-
0031860932
-
A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer
-
Tieleman D.P., and Berendsen H.J.C. A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer. Biophys. J. 74 (1998) 2786-2801
-
(1998)
Biophys. J.
, vol.74
, pp. 2786-2801
-
-
Tieleman, D.P.1
Berendsen, H.J.C.2
-
7
-
-
0036301334
-
Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution
-
Im W., and Roux B. Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution. J. Mol. Biol. 319 (2002) 1177-1197
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 1177-1197
-
-
Im, W.1
Roux, B.2
-
8
-
-
0036389892
-
Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics and continuum electrodiffusion theory
-
Im W., and Roux B. Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics and continuum electrodiffusion theory. J. Mol. Biol. 322 (2002) 851-869
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 851-869
-
-
Im, W.1
Roux, B.2
-
9
-
-
0041663886
-
Molecular origin of the cation selectivity in OmpF porin: single channel conductances vs. free energy calculation
-
Danelon C., Suenaga A., Winterhalter M., and Yamato I. Molecular origin of the cation selectivity in OmpF porin: single channel conductances vs. free energy calculation. Biophys. Chem. 104 (2003) 591-603
-
(2003)
Biophys. Chem.
, vol.104
, pp. 591-603
-
-
Danelon, C.1
Suenaga, A.2
Winterhalter, M.3
Yamato, I.4
-
11
-
-
21344448391
-
Transport properties of nanopores in electrolyte solutions: the diffusional model and surface currents
-
Fulinski A., Kosinska I.D., and Siwy Z. Transport properties of nanopores in electrolyte solutions: the diffusional model and surface currents. New J. Phys. 7 132 (2005) 1-18
-
(2005)
New J. Phys.
, vol.7
, Issue.132
, pp. 1-18
-
-
Fulinski, A.1
Kosinska, I.D.2
Siwy, Z.3
-
12
-
-
21744445488
-
A Nernst-Planck/Poisson model for ionic transport through synthetic conical nanopores
-
Cervera J., Schiedt B., and Ramírez P. A Nernst-Planck/Poisson model for ionic transport through synthetic conical nanopores. Europhys. Lett. 71 (2005) 35-41
-
(2005)
Europhys. Lett.
, vol.71
, pp. 35-41
-
-
Cervera, J.1
Schiedt, B.2
Ramírez, P.3
-
13
-
-
27344445018
-
Asymmetric nanodiffusion
-
Kosinka I.D., and Fulinski A. Asymmetric nanodiffusion. Phys. Rev. E 72 011201 (2005) 1-7
-
(2005)
Phys. Rev. E
, vol.72
, Issue.011201
, pp. 1-7
-
-
Kosinka, I.D.1
Fulinski, A.2
-
14
-
-
0001962326
-
Invalidity of continuum theories of electrolytes in nanopores
-
Corry B., Kuyucak S., and Chung S.H. Invalidity of continuum theories of electrolytes in nanopores. Chem. Phys. Lett. 320 (2000) 35-41
-
(2000)
Chem. Phys. Lett.
, vol.320
, pp. 35-41
-
-
Corry, B.1
Kuyucak, S.2
Chung, S.H.3
-
15
-
-
0026078627
-
General continuum theory for multiion channel. II. Application to acetylcholine channel
-
Levitt D.G. General continuum theory for multiion channel. II. Application to acetylcholine channel. Biophys J. 59 (1991) 278-288
-
(1991)
Biophys J.
, vol.59
, pp. 278-288
-
-
Levitt, D.G.1
-
16
-
-
0031682987
-
Ion permeation and glutamate residues linked by Poisson-Nernst-Planck theory in L-type calcium channels
-
Nonner W., and Eisenberg B. Ion permeation and glutamate residues linked by Poisson-Nernst-Planck theory in L-type calcium channels. Biophys. J. 75 (1998) 1287-1305
-
(1998)
Biophys. J.
, vol.75
, pp. 1287-1305
-
-
Nonner, W.1
Eisenberg, B.2
-
17
-
-
0032981778
-
Selectivity and permeation in calcium release channel of cardiac muscle: alkali metal ions
-
Chen D., Xu L., Tripathy A., Meissner G., and Eisenberg B. Selectivity and permeation in calcium release channel of cardiac muscle: alkali metal ions. Biophys. J. 76 (1999) 1346-1366
-
(1999)
Biophys. J.
, vol.76
, pp. 1346-1366
-
-
Chen, D.1
Xu, L.2
Tripathy, A.3
Meissner, G.4
Eisenberg, B.5
-
18
-
-
0027293087
-
Zero-current potentials in a large membrane channel: a simple theory accounts for complex behavior
-
Zambrowicz E.B., and Colombini M. Zero-current potentials in a large membrane channel: a simple theory accounts for complex behavior. Biophys. J. 65 (1993) 1093-1100
-
(1993)
Biophys. J.
, vol.65
, pp. 1093-1100
-
-
Zambrowicz, E.B.1
Colombini, M.2
-
19
-
-
0035846403
-
Reversal potential of a wide ion channel. Nonuniform charge distribution effects
-
Levadny V., and Aguilella V.M. Reversal potential of a wide ion channel. Nonuniform charge distribution effects. J. Phys. Chem. B 105 (2001) 9902-9908
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 9902-9908
-
-
Levadny, V.1
Aguilella, V.M.2
-
20
-
-
33646893485
-
A review of hydrodynamic and energy-transport models for semiconductor device simulation
-
Grasser T., Tang T.W., Kosina H., and Selberherr S. A review of hydrodynamic and energy-transport models for semiconductor device simulation. Proc. IEEE 91 (2003) 251-274
-
(2003)
Proc. IEEE
, vol.91
, pp. 251-274
-
-
Grasser, T.1
Tang, T.W.2
Kosina, H.3
Selberherr, S.4
-
23
-
-
0026779245
-
Crystal structures explain functional properties of two E. coli porins
-
Cowan S.W., Schirmer T., Rummel G., Steiert M., Ghosh R., Pauptit R.A., Jansonius J.N., and Rosenbusch J.P. Crystal structures explain functional properties of two E. coli porins. Nature 358 (1992) 727-733
-
(1992)
Nature
, vol.358
, pp. 727-733
-
-
Cowan, S.W.1
Schirmer, T.2
Rummel, G.3
Steiert, M.4
Ghosh, R.5
Pauptit, R.A.6
Jansonius, J.N.7
Rosenbusch, J.P.8
-
26
-
-
0026124585
-
Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian dynamics program
-
Davis M.E., Madura J.D., Luty B.A., and McCammon J.A. Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian dynamics program. Comp. Phys. Comm. 62 (1991) 187-197
-
(1991)
Comp. Phys. Comm.
, vol.62
, pp. 187-197
-
-
Davis, M.E.1
Madura, J.D.2
Luty, B.A.3
McCammon, J.A.4
-
27
-
-
0029633152
-
Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics Program
-
Madura J.D., Briggs J.M., Wade R.C., Davis M.E., Luty B.A., Ilin A., Antosiewicz J., Gilson M.K., Bagheri B., Scott L.R., and McCammon J.A. Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics Program. Comp. Phys. Comm. 91 (1995) 57-95
-
(1995)
Comp. Phys. Comm.
, vol.91
, pp. 57-95
-
-
Madura, J.D.1
Briggs, J.M.2
Wade, R.C.3
Davis, M.E.4
Luty, B.A.5
Ilin, A.6
Antosiewicz, J.7
Gilson, M.K.8
Bagheri, B.9
Scott, L.R.10
McCammon, J.A.11
-
28
-
-
0001027740
-
Diffusion past an entropy barrier
-
Zwanzig R. Diffusion past an entropy barrier. J. Phys. Chem. 69 (1992) 3926-3930
-
(1992)
J. Phys. Chem.
, vol.69
, pp. 3926-3930
-
-
Zwanzig, R.1
-
30
-
-
1142298543
-
Ionization states of residues in OmpF and mutants: effects of dielectric constant and interactions between residues
-
Varma S., and Jakobsson. Ionization states of residues in OmpF and mutants: effects of dielectric constant and interactions between residues. Biophys. J. 86 (2004) 690-704
-
(2004)
Biophys. J.
, vol.86
, pp. 690-704
-
-
Varma, S.1
Jakobsson2
-
31
-
-
0036873086
-
The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology
-
Fogolari F., Brigo A., and Molinari H. The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology. J. Mol. Recognit. 15 (2002) 377-392
-
(2002)
J. Mol. Recognit.
, vol.15
, pp. 377-392
-
-
Fogolari, F.1
Brigo, A.2
Molinari, H.3
-
34
-
-
0035363422
-
Modified Donnan potentials for ion transport through biological ion channels
-
Gillespie D., and Eisenberg R.S. Modified Donnan potentials for ion transport through biological ion channels. Phys. Rev. E 63 (2001) 061902
-
(2001)
Phys. Rev. E
, vol.63
, pp. 061902
-
-
Gillespie, D.1
Eisenberg, R.S.2
-
35
-
-
0027157588
-
Charges, currents and potentials in ionic channels of one conformation
-
Chen D., and Eisenberg R.S. Charges, currents and potentials in ionic channels of one conformation. Biophys. J. 64 (1993) 1405-1421
-
(1993)
Biophys. J.
, vol.64
, pp. 1405-1421
-
-
Chen, D.1
Eisenberg, R.S.2
-
36
-
-
0028000828
-
Electrostatic properties of two porin channels from Escherichia coli
-
Karshikoff A., Spassov V., Cowan S., Ladenstein R., and Schirmer T. Electrostatic properties of two porin channels from Escherichia coli. J. Mol. Biol. 240 (1994) 372-384
-
(1994)
J. Mol. Biol.
, vol.240
, pp. 372-384
-
-
Karshikoff, A.1
Spassov, V.2
Cowan, S.3
Ladenstein, R.4
Schirmer, T.5
-
37
-
-
0345413270
-
Residue ionization and ion transport through OmpF channels
-
Nestorovich E.M., Rostovtseva T.K., and Bezrukov S.M. Residue ionization and ion transport through OmpF channels. Biophys. J. 85 (2003) 3718-3729
-
(2003)
Biophys. J.
, vol.85
, pp. 3718-3729
-
-
Nestorovich, E.M.1
Rostovtseva, T.K.2
Bezrukov, S.M.3
-
38
-
-
0033579482
-
Brownian dynamics simulation of ion flow through porin channels
-
Schirmer T., and Phale P. Brownian dynamics simulation of ion flow through porin channels. J. Mol. Biol. 294 (1999) 1159-1167
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 1159-1167
-
-
Schirmer, T.1
Phale, P.2
-
39
-
-
16344382423
-
Permeation properties of an engineered bacterial OmpF porin containing the EEEE-locus of Ca2+ channels
-
Miedema H., Meter-Arkema A., Wierenga J., Tang J., Eisenberg B., Nonner W., Hektor H., Gillespie D., and Meijberg W. Permeation properties of an engineered bacterial OmpF porin containing the EEEE-locus of Ca2+ channels. Biophys. J. 87 (2004) 3137-3147
-
(2004)
Biophys. J.
, vol.87
, pp. 3137-3147
-
-
Miedema, H.1
Meter-Arkema, A.2
Wierenga, J.3
Tang, J.4
Eisenberg, B.5
Nonner, W.6
Hektor, H.7
Gillespie, D.8
Meijberg, W.9
-
40
-
-
27344454932
-
GROMACS: fast, flexible, and free
-
van der Spoel D., Lindahl E., Hess B., Groenhof G., Mark A.E., and Berendsen H.J.C. GROMACS: fast, flexible, and free. J. Comp. Chem. 26 (2005) 1701-1718
-
(2005)
J. Comp. Chem.
, vol.26
, pp. 1701-1718
-
-
van der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.C.6
|