-
1
-
-
0032003667
-
Simulation of polymer melts. I. Coarse-graining procedure for polycarbonates
-
W. Tschop, K. Kremer, J. Batoulis, T. Burger, O. Hahn. Simulation of polymer melts. I. Coarse-graining procedure for polycarbonates. Acta Polym., 49, 61 (1998).
-
(1998)
Acta Polym
, vol.49
, pp. 61
-
-
Tschop, W.1
Kremer, K.2
Batoulis, J.3
Burger, T.4
Hahn, O.5
-
2
-
-
0037120092
-
Coarse-graining in polymer simulation: From the atomistic to the mesoscopic scale and back
-
F. Muller-Plathe. Coarse-graining in polymer simulation: from the atomistic to the mesoscopic scale and back. Chem. Phys. Chem., 3, 754 (2002).
-
(2002)
Chem. Phys. Chem
, vol.3
, pp. 754
-
-
Muller-Plathe, F.1
-
3
-
-
0034909360
-
Mesoscopic simulation of cell membrane damage, morphology change and rupture by nonionic surfactants
-
R.D. Groot, K.L. Rabone. Mesoscopic simulation of cell membrane damage, morphology change and rupture by nonionic surfactants. Biophys. J., 81, 725 (2001).
-
(2001)
Biophys. J
, vol.81
, pp. 725
-
-
Groot, R.D.1
Rabone, K.L.2
-
4
-
-
0000283071
-
Mobility and elasticity of self-assembled membranes
-
R. Goetz, G. Gompper, R. Lipowsky. Mobility and elasticity of self-assembled membranes. Phys. Rev. Lett., 82, 221 (1999).
-
(1999)
Phys. Rev. Lett
, vol.82
, pp. 221
-
-
Goetz, R.1
Gompper, G.2
Lipowsky, R.3
-
5
-
-
21244431672
-
Simulation studies of protein-induced bilayer deformations, and lipid-induced protein tilting, on a mesoscopic model for lipid bilayers with embedded proteins
-
M. Venturoli, B. Smit, M.M. Sperotto. Simulation studies of protein-induced bilayer deformations, and lipid-induced protein tilting, on a mesoscopic model for lipid bilayers with embedded proteins. Biophys. J., 88, 1778 (2005).
-
(2005)
Biophys. J
, vol.88
, pp. 1778
-
-
Venturoli, M.1
Smit, B.2
Sperotto, M.M.3
-
6
-
-
2342473866
-
Coarse grain models and the computer simulation of soft materials
-
S.O. Nielsen, C.F. Lopez, G. Srinivas, M.L. Klein. Coarse grain models and the computer simulation of soft materials. J. Phys. Condens. Matter, 16, R481 (2004).
-
(2004)
J. Phys. Condens. Matter
, vol.16
-
-
Nielsen, S.O.1
Lopez, C.F.2
Srinivas, G.3
Klein, M.L.4
-
7
-
-
1642485164
-
Coarse grained model for semiquantitative lipid simulations
-
S.J. Marrink, A.H. de Vries, A.E. Mark. Coarse grained model for semiquantitative lipid simulations. J. Phys. Chem. B, 108, 750 (2004).
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 750
-
-
Marrink, S.J.1
de Vries, A.H.2
Mark, A.E.3
-
8
-
-
0035902367
-
A coarse grain model for phospholipid simulations
-
J.C. Shelley, M.Y. Shelly, R.C. Reeder, S. Bandyopadhyay, M.L. Klein. A coarse grain model for phospholipid simulations. J. Phys. Chem. B, 105, 4464 (2001).
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 4464
-
-
Shelley, J.C.1
Shelly, M.Y.2
Reeder, R.C.3
Bandyopadhyay, S.4
Klein, M.L.5
-
9
-
-
14544291957
-
A multiscale coarse-graining method for biomolecular systems
-
S. Izvekov, G.A. Voth. A multiscale coarse-graining method for biomolecular systems. J. Phys. Chem. B, 109, 2469 (2005).
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 2469
-
-
Izvekov, S.1
Voth, G.A.2
-
10
-
-
3042683179
-
Simulation of diblock copolymer self-assembly, using a coarse-grain model
-
G. Srinivas, J.C. Shelley, S.O. Nielsen, D.E. Discher, M.L. Klein. Simulation of diblock copolymer self-assembly, using a coarse-grain model. J. Phys. Chem. B, 108, 8153 (2004).
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 8153
-
-
Srinivas, G.1
Shelley, J.C.2
Nielsen, S.O.3
Discher, D.E.4
Klein, M.L.5
-
11
-
-
0037042149
-
A coarse-graining procedure for flexible polymer chains with bonded and nonbonded interactions
-
H. Fukunaga, J. Takimoto, M. Doi. A coarse-graining procedure for flexible polymer chains with bonded and nonbonded interactions. J. Chem. Phys., 116, 8183 (2002).
-
(2002)
J. Chem. Phys
, vol.116
, pp. 8183
-
-
Fukunaga, H.1
Takimoto, J.2
Doi, M.3
-
12
-
-
0000862725
-
Computer-simulations of a water oil interface in the presence of micelles
-
B. Smit, P.A.J. Hilbers, K. Esselink, L.A.M. Rupert, N.M. Vanos, A.G. Schlijper. Computer-simulations of a water oil interface in the presence of micelles. Nature, 348, 624 (1990).
-
(1990)
Nature
, vol.348
, pp. 624
-
-
Smit, B.1
Hilbers, P.A.J.2
Esselink, K.3
Rupert, L.A.M.4
Vanos, N.M.5
Schlijper, A.G.6
-
13
-
-
33750361781
-
Systematic coarse-graining of a polymer blend: Polyisoprene and polystyrene
-
Q. Sun, R. Faller. Systematic coarse-graining of a polymer blend: polyisoprene and polystyrene. J. Chem. Theory Comput., 2, 607 (2006).
-
(2006)
J. Chem. Theory Comput
, vol.2
, pp. 607
-
-
Sun, Q.1
Faller, R.2
-
15
-
-
27944495588
-
Multiscale modeling of lipids and lipid bilayers
-
A.P. Lyubartsev. Multiscale modeling of lipids and lipid bilayers. Eur. Biophys. J., 35, 53 (2005).
-
(2005)
Eur. Biophys. J
, vol.35
, pp. 53
-
-
Lyubartsev, A.P.1
-
16
-
-
0142198916
-
A coarse grain model for n-alkanes parameterized from surface tension data
-
S.O. Nielsen, C.F. Lopez, G. Srinivas, M.L. Klein. A coarse grain model for n-alkanes parameterized from surface tension data. J. Chem. Phys., 119, 7043 (2003).
-
(2003)
J. Chem. Phys
, vol.119
, pp. 7043
-
-
Nielsen, S.O.1
Lopez, C.F.2
Srinivas, G.3
Klein, M.L.4
-
17
-
-
34547809547
-
A unified formulation of the constant temperature molecular-dynamics methods
-
S. Nosé. A unified formulation of the constant temperature molecular-dynamics methods. J. Chem. Phys., 81, 511 (1984).
-
(1984)
J. Chem. Phys
, vol.81
, pp. 511
-
-
Nosé, S.1
-
18
-
-
36449000062
-
Nosé-Hoover chains: The canonical ensemble via continuous dynamics
-
G.J. Martyna, M.L. Klein, M. Tuckerman. Nosé-Hoover chains: the canonical ensemble via continuous dynamics. J. Chem. Phys., 97, 2635 (1992).
-
(1992)
J. Chem. Phys
, vol.97
, pp. 2635
-
-
Martyna, G.J.1
Klein, M.L.2
Tuckerman, M.3
-
19
-
-
33646650705
-
Reversible multiple time scale molecular dynamics
-
M. Tuckerman, G.J. Martyne, B.J. Berne. Reversible multiple time scale molecular dynamics. J. Chem. Phys., 97, 1990 (1992).
-
(1992)
J. Chem. Phys
, vol.97
, pp. 1990
-
-
Tuckerman, M.1
Martyne, G.J.2
Berne, B.J.3
-
20
-
-
0037693091
-
Rigid-body dynamics in the isothermal-isobaric ensemble: A test on the accuracy and computational efficiency
-
W. Shinoda, M. Mikami. Rigid-body dynamics in the isothermal-isobaric ensemble: a test on the accuracy and computational efficiency. J. Comput. Chem., 24, 920 (2003).
-
(2003)
J. Comput. Chem
, vol.24
, pp. 920
-
-
Shinoda, W.1
Mikami, M.2
-
21
-
-
0041784950
-
-
A.D. MacKerell Jr, D. Bashford, M. Bellott, R.L. Dunbrack Jr, J.D. Evanseck, M.J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F.T.K. Lau, C. Mattos, S. Michnick, T. Ngo, D.T. Nguyen. B. Prodhom, W.E. Reiher III, B. Roux, M. Schlenkrich, J.C. Smith, R. Stole, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, M. Karplus. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B, 102, 3586 (1998).
-
A.D. MacKerell Jr, D. Bashford, M. Bellott, R.L. Dunbrack Jr, J.D. Evanseck, M.J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F.T.K. Lau, C. Mattos, S. Michnick, T. Ngo, D.T. Nguyen. B. Prodhom, W.E. Reiher III, B. Roux, M. Schlenkrich, J.C. Smith, R. Stole, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, M. Karplus. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B, 102, 3586 (1998).
-
-
-
-
22
-
-
10844272181
-
Comparative molecular dynamics study of ether- and ester-linked phospholipid bilayers
-
K. Shinoda, W. Shinoda, T. Baba, M. Mikami. Comparative molecular dynamics study of ether- and ester-linked phospholipid bilayers. J. Chem. Phys., 121, 9648 (2004).
-
(2004)
J. Chem. Phys
, vol.121
, pp. 9648
-
-
Shinoda, K.1
Shinoda, W.2
Baba, T.3
Mikami, M.4
-
24
-
-
0000026966
-
Explicit reversible integrators for extended systems dynamics
-
G.J. Martyna, M.E. Tuckerman, D.J. Tobias, M.L. Klein. Explicit reversible integrators for extended systems dynamics. Mol. Phys., 87, 1117(1996).
-
(1996)
Mol. Phys
, vol.87
, pp. 1117
-
-
Martyna, G.J.1
Tuckerman, M.E.2
Tobias, D.J.3
Klein, M.L.4
-
26
-
-
36449003554
-
Constant pressure molecular dynamics algorithms
-
G.J. Martyna, D.J. Tobias, M.L. Klein. Constant pressure molecular dynamics algorithms. J. Chem. Phys., 101, 4177 (1994).
-
(1994)
J. Chem. Phys
, vol.101
, pp. 4177
-
-
Martyna, G.J.1
Tobias, D.J.2
Klein, M.L.3
-
27
-
-
4143087050
-
Calculating potentials of mean force from steered molecular dynamics simulations
-
S. Park, K. Schulten. Calculating potentials of mean force from steered molecular dynamics simulations. J. Chem. Phys., 120, 5946 (2004).
-
(2004)
J. Chem. Phys
, vol.120
, pp. 5946
-
-
Park, S.1
Schulten, K.2
-
30
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
W.L. Jorgensen, J. Chandrashekar, J.D. Madura, R. Impey, M.L. Klein. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys., 79, 926 (1983).
-
(1983)
J. Chem. Phys
, vol.79
, pp. 926
-
-
Jorgensen, W.L.1
Chandrashekar, J.2
Madura, J.D.3
Impey, R.4
Klein, M.L.5
-
31
-
-
33644929350
-
Multiscale coarse graining of liquid-state systems
-
S. Izvekov, G.A. Voth. Multiscale coarse graining of liquid-state systems. J. Chem. Phys., 123, 134105 (2005).
-
(2005)
J. Chem. Phys
, vol.123
, pp. 134105
-
-
Izvekov, S.1
Voth, G.A.2
-
32
-
-
0003924110
-
-
McGraw-Hill. Online version available at
-
C.L. Yaws. Chemical Properties Handbook, McGraw-Hill. Online version available at: http://www.knovel.com/knovel2/Toc.jsp?BookID = 49 (1999).
-
(1999)
Chemical Properties Handbook
-
-
Yaws, C.L.1
-
35
-
-
0032987478
-
Membrane protein folding and stability: Physical principles
-
S.H. White, W.C. Wimley. Membrane protein folding and stability: physical principles. Ann. Rev. Biophys. Biomol. Struct., 28, 319 (1999).
-
(1999)
Ann. Rev. Biophys. Biomol. Struct
, vol.28
, pp. 319
-
-
White, S.H.1
Wimley, W.C.2
-
37
-
-
0035812426
-
Simulation of the spontaneous aggregation of phospholipids into bilayers
-
S.J. Marrink, E. Lindahl, O. Edholm, A.E. Mark. Simulation of the spontaneous aggregation of phospholipids into bilayers. J. Am. Chem. Soc., 123, 8638 (2001).
-
(2001)
J. Am. Chem. Soc
, vol.123
, pp. 8638
-
-
Marrink, S.J.1
Lindahl, E.2
Edholm, O.3
Mark, A.E.4
|