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Volumn 8, Issue , 2007, Pages

An efficient grid layout algorithm for biological networks utilizing various biological attributes

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL INFORMATION; BIOLOGICAL NETWORKS; FORCE DIRECTED ALGORITHMS; LAYOUT ALGORITHMS; LOCAL SEARCH STRATEGY; SEARCH STRATEGIES; SIGNAL TRANSDUCTION PATHWAYS; SUBCELLULAR LOCALIZATIONS;

EID: 33947388382     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-76     Document Type: Article
Times cited : (27)

References (22)
  • 1
    • 2642533799 scopus 로고    scopus 로고
    • Genomic Object Net: I. A platform for modelling and simulating biopathways
    • 15130806
    • Nagasaki M Doi A Matsuno H Miyano S Genomic Object Net: I. A platform for modelling and simulating biopathways Applied Bioinformatics 2003 2 3 181-184 15130806
    • (2003) Applied Bioinformatics , vol.2 , Issue.3 , pp. 181-184
    • Nagasaki, M.1    Doi, A.2    Matsuno, H.3    Miyano, S.4
  • 2
    • 2642527148 scopus 로고    scopus 로고
    • Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension
    • 15130807
    • Doi A Nagasaki M Fujita S Matsuno H Miyano S Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension Applied Bioinformatics 2003 2 3 185-188 15130807
    • (2003) Applied Bioinformatics , vol.2 , Issue.3 , pp. 185-188
    • Doi, A.1    Nagasaki, M.2    Fujita, S.3    Matsuno, H.4    Miyano, S.5
  • 3
  • 4
    • 84886766276 scopus 로고    scopus 로고
    • Networks/Pajek http://vlado.fmf.uni-lj.si/pub/networks/pajek/
  • 5
    • 0036326896 scopus 로고    scopus 로고
    • PATIKA: An integrated visual environment for collaborative construction and analysis of cellular pathways
    • 10.1093/bioinformatics/18.7.996 12117798
    • Demir E Babur O Dogrusoz U Gursoy A Nisanci G Atalay RC Ozturk M PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways Bioinformatics 2002 18 7 996-1003 10.1093/ bioinformatics/18.7.996 12117798
    • (2002) Bioinformatics , vol.18 , Issue.7 , pp. 996-1003
    • Demir, E.1    Babur, O.2    Dogrusoz, U.3    Gursoy, A.4    Nisanci, G.5    Atalay, R.C.6    Ozturk, M.7
  • 6
    • 32144455205 scopus 로고    scopus 로고
    • PATIKAweb: A Web interface for analyzing biological pathways through advanced querying and visualization
    • 10.1093/bioinformatics/bti776 16287939
    • Dogrusoz U Erson EZ Giral E Demir E Babur O Cetintas A Colak R PATIKAweb: A Web interface for analyzing biological pathways through advanced querying and visualization Bioinformatics 2006 22 3 374-375 10.1093/bioinformatics/bti776 16287939
    • (2006) Bioinformatics , vol.22 , Issue.3 , pp. 374-375
    • Dogrusoz, U.1    Erson, E.Z.2    Giral, E.3    Demir, E.4    Babur, O.5    Cetintas, A.6    Colak, R.7
  • 7
    • 0242380634 scopus 로고    scopus 로고
    • CADLIVE for constructing a large-scale biochemical network based on a simulation-directed notation and its application to yeast cell cycle
    • 165976 12853624 10.1093/nar/gkg461
    • Kurata H Matoba N Shimizu N CADLIVE for constructing a large-scale biochemical network based on a simulation-directed notation and its application to yeast cell cycle Nucleic Acids Research 2003 31 14 4071-4084 165976 12853624 10.1093/nar/gkg461
    • (2003) Nucleic Acids Research , vol.31 , Issue.14 , pp. 4071-4084
    • Kurata, H.1    Matoba, N.2    Shimizu, N.3
  • 8
    • 17844397967 scopus 로고    scopus 로고
    • CADLIVE dynamic simulator: Direct link of biochemical networks to dynamic models
    • 1074374 15805500 10.1101/gr.3463705
    • Kurata H Masaki K Sumida Y Iwasaki R CADLIVE dynamic simulator: Direct link of biochemical networks to dynamic models Genome Research 2005 15 4 590-600 1074374 15805500 10.1101/gr.3463705
    • (2005) Genome Research , vol.15 , Issue.4 , pp. 590-600
    • Kurata, H.1    Masaki, K.2    Sumida, Y.3    Iwasaki, R.4
  • 11
    • 0035003178 scopus 로고    scopus 로고
    • A graph layout algorithm for drawing metabolic pathways
    • 10.1093/bioinformatics/17.5.461 11331241
    • Becker MY Rojas I A graph layout algorithm for drawing metabolic pathways Bioinformatics 2001 17 5 461-467 10.1093/bioinformatics/ 17.5.461 11331241
    • (2001) Bioinformatics , vol.17 , Issue.5 , pp. 461-467
    • Becker, M.Y.1    Rojas, I.2
  • 13
    • 25444504488 scopus 로고    scopus 로고
    • A new dynamical layout algorithm for complex biochemical reaction networks
    • 1236911 16124872
    • Wegner K Kummer U A new dynamical layout algorithm for complex biochemical reaction networks BMC Bioinformatics 2005 6 212 1236911 16124872
    • (2005) BMC Bioinformatics , vol.6 , pp. 212
    • Wegner, K.1    Kummer, U.2
  • 14
    • 18744387729 scopus 로고    scopus 로고
    • A grid layout algorithm for automatic drawing of biochemical networks
    • 10.1093/bioinformatics/bti290 15677705
    • Li W Kurata H A grid layout algorithm for automatic drawing of biochemical networks Bioinformatics 2005 21 9 2036-2042 10.1093/ bioinformatics/bti290 15677705
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 2036-2042
    • Li, W.1    Kurata, H.2
  • 15
    • 33748545276 scopus 로고    scopus 로고
    • Automatic drawing of biological networks using cross cost and subcomponent data
    • 16901086
    • Kato M Nagasaki M Doi A Miyano S Automatic drawing of biological networks using cross cost and subcomponent data Genome Informatics 2005 16 2 22-31 16901086
    • (2005) Genome Informatics , vol.16 , Issue.2 , pp. 22-31
    • Kato, M.1    Nagasaki, M.2    Doi, A.3    Miyano, S.4
  • 18
    • 0001070640 scopus 로고
    • A heuristic for graph drawing
    • Eades P A heuristic for graph drawing Congressus Nemerantium 1984 42 149-160
    • (1984) Congressus Nemerantium , vol.42 , pp. 149-160
    • Eades, P.1
  • 19
    • 84877261134 scopus 로고    scopus 로고
    • Endothelial activation: Intracellular signaling pathways
    • 10.1186/ar576 12110129
    • Pober JS Endothelial activation: Intracellular signaling pathways Arthritis Research 2002 4 Suppl 3 S109-116 10.1186/ar576 12110129
    • (2002) Arthritis Research , vol.4 , Issue.SUPPL. 3
    • Pober, J.S.1
  • 20
    • 0345170900 scopus 로고    scopus 로고
    • Biopathways representation and simulation on hybrid functional Petri net
    • 12954096
    • Matsuno H Tanaka Y Aoshima H Doi A Matsui M Miyano S Biopathways representation and simulation on hybrid functional Petri net In Silico Biology 2003 3 3 389-404 12954096
    • (2003) In Silico Biology , vol.3 , Issue.3 , pp. 389-404
    • Matsuno, H.1    Tanaka, Y.2    Aoshima, H.3    Doi, A.4    Matsui, M.5    Miyano, S.6
  • 21
    • 33947371802 scopus 로고    scopus 로고
    • Cell fate simulation model of gustatory nuerons with microRNAs double-negative feedback loop by hybrid functional Petri net with extension
    • Saito A Nagasaki M Doi A Ueno K Miyano S Cell fate simulation model of gustatory nuerons with microRNAs double-negative feedback loop by hybrid functional Petri net with extension Genome Informatics 2006 17 100-111
    • (2006) Genome Informatics , vol.17 , pp. 100-111
    • Saito, A.1    Nagasaki, M.2    Doi, A.3    Ueno, K.4    Miyano, S.5
  • 22
    • 84886754258 scopus 로고    scopus 로고
    • http://www.csml.org/download/SCCBLayout_BMC_inst.exe


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.