Solvent accessibility, residue charge and residue volume, the three ingredients of a robust amino acid substitution matrix

Journal of Theoretical Biology

Volumn 245, Issue 4, 2007, Pages 715-725

  Goodarzi, Hani ^a   Katanforoush, Ali ^b,c   Torabi, Noorossadat ^b   Najafabadi, Hamed Shateri ^b  

^a PRINCETON UNIVERSITY   (United States)

^b UNIVERSITY OF TEHRAN   (Iran)

^c INSTITUTE FOR STUDIES IN THEORETICAL PHYSICS AND MATHEMATICS IPM   (Iran)

Author keywords

Amino acid substitution matrix; Cost measure matrix; Genetic code; Load minimization; Optimality; Scoring matrix

Indexed keywords

AMINO ACID; SOLVENT;

AMINO ACID; GENETIC ALGORITHM; PROTEIN; SOLVENT;

AMINO ACID ANALYSIS; AMINO ACID SUBSTITUTION; ARTICLE; CODON USAGE; GENETIC CODE; PRIORITY JOURNAL; PROTEIN FAMILY; SCORING SYSTEM;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; AMINO ACIDS; ANIMALS; CODON; EVOLUTION, MOLECULAR; GENETIC CODE; MATHEMATICS; MODELS, CHEMICAL; MODELS, GENETIC; MUTATION; SEQUENCE ALIGNMENT; SOLVENTS;

STRAWBERRY CRINKLE VIRUS;

EID: 33947364010     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2006.12.014     Document Type: Article

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