Finding genomic ontology terms in text using evidence content

BMC Bioinformatics

Volumn 6, Issue SUPPL.1, 2005, Pages

  Couto, Francisco M ^a   Silva, Mário J ^a   Coutinho, Pedro M ^b  

^a UNIVERSITY OF LISBON   (Portugal)

^b CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATIC ANNOTATION; BIOLOGICAL ENTITIES; BIOLOGICAL PROPERTIES; GENE ONTOLOGY ANNOTATIONS; RECENT RESEARCHES; SCIENTIFIC LITERATURE; UNSTRUCTURED TEXTS; UNSUPERVISED METHOD;

DATA MINING;

CHARACTER RECOGNITION;

ARTICLE; AUTOMATION; GENETIC ANALYSIS; GENETIC DATABASE; GENOMICS; INFORMATION PROCESSING; INTERMETHOD COMPARISON; MOLECULAR BIOLOGY; NOMENCLATURE; PREDICTION; PROTEIN ANALYSIS; AUTOMATED PATTERN RECOGNITION; BIOLOGY; BOOK; CLASSIFICATION; PROCEDURES; PUBLICATION; WRITING;

COMPUTATIONAL BIOLOGY; GENOMICS; PATTERN RECOGNITION, AUTOMATED; PERIODICALS AS TOPIC; TERMINOLOGY AS TOPIC; TEXTBOOKS AS TOPIC; WRITING;

EID: 33947308770     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-6-S1-S21     Document Type: Article

References (8)

1. Andrade M, Bork P: Automated extraction of information in molecular biology. FEBS Letters 2000, 476:12-17.
2. Hirschman L, Park J, Tsujii J, Wong L, Wu C: Accomplishments and challenges in literature data mining for biology. Bioinformatics 2002, 18(12):1553-1561.
3. Blaschke C, Hirschman L, Valencia A: Information Extraction in Molecular Biology. Briefings in Bioinformatics 2002, 3:1-12.
4. Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R: The Gene Ontology Annotations (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Research 2004, 32:262-266.
5. Resnik P: Semantic similarityAin a taxonomy: an information-based measure and its application to problems of ambiguity in natural language. Artificial Intelligence Research 1999, 11:95-130.
6. Couto F, Silva M, Coutinho P: Implementation of a Functional Semantic Similarity Measure between Gene-Products. DI/FCUL TR 03-29, Department of Informatics, University of Lisbon 2003 [http://www.di.fc.ul.pt/ tech-reports/03-29.pdf].
7. Yeh A, Hirschman L, Morgan A: Evaluation of Text Data Mining for Database Curation: Lessons Learned from the KDD Challenge Cup. Bioinformatics 2003, 19:331i-339i.
8. Couto F, Martins B, Silva M: Classifying biological articles using web resources. Proceedings of the 2004 ACM symposium on Applied computing, ACM Press 2004:111-115.